Lag0036667 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0036667
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr2: 288567 .. 290352 (+)
RNA-Seq Expression	Lag0036667
Synteny	Lag0036667

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTACTCGAATGGAACCATTGGAAGCAAACATGGCGGATTTGTGGAATTTTGTTGGAAATATCTCTGAGCTGGTTGCACAGATGAAGAGGGTTTGTTGGTCGTCATATCCTAGTTAAAAGTCTGAAATCGGAACGGGTTGTTGATAGGGATCAAGGAAAGAAGAACAATGAAGCGGTTAGTGCGACGGCGAATGCTTGTGTGGGAGAATCGTAGGTGCAGTTGAACAAACGGTTTTCGATCTTCGACTTAAAAGCTTGAGATTCTGATTTTCTCTCAATTGAATCCTATGAGTGGTTGCATCAGGTAGAACAGTACTTTGTCGTAAATCAATTGACTGATTCAGAGCAAGTAGAAGCTATTGTTCTCTGTTTGGATGGAGTTGGGTTAAAATGGCATCATTGGGAGAAGCGTCAACGGTCGATTGGAAGTTGGGAGCAGTTTCGTCGCCTTCTTCTGCAACGTTTTCTTCCGACTAAAGAAGGTAACCTTCATGAATGATTCTTTGTGCTTAAAAAAGAATCGACTATGGCGGACTATCGAGAGAAGTTCGAAGAGTTTTCATCACCGTTGGAAAACCTAGATAATGCGACTTTGGAAGGAGAATTCGTTGATGGGCTAAAAGGATATAAAGATAAAACTACGGTGAACCGTTCTGTTGGGCTTAACTTGATAATGGAAATGGCCCCAAAATTAGAAGATGAACGTTGCATTTTGAAGAAATATATTTTGGAGCTACCTTTAATCCAAAAACACCGGACCAAAGTCCAAGTTTGTCATTTGTTACGCCCAAATCTGCTTTGTATGATGCTAGATCCAACGCGCGTACTATTTTTGTCAATTATAGTAAATTAGGCGCGACTTTTTGAAAGGACGGTGTTGGGAAGCGAGCTGAAGTTCCATTTAAGAAACTGACTGATTTAGAGTTTCAAATTAGATGTGAAAATGGGCTATGCTATCGATGTGAAGAGAAGTTTTTCTATAGGCACCAATGTAAGGAGTTGCAGTTATGGTAGTTTTTTTTTAAAATAAGGTTATGGTAGTTCAAGATGAAGAAGTTGGAGTAGAAGAGCAAGTAGGGAAGTGGTCGTGCAGACTACAGAGATGGCCAGCGAATGTCCGTTGGGAGAAAGACCGCCGAAGAAGAAGTGGAGGTTGGACTGCATTCTATGGTCCATATCAAATCTCCGAAAACCATCAAGTTGACGGGTTTAATTGGAGCCACAGAGGTTATTTTTTGGTTGACAATGGTGCTACACATAATTTCATTACTTTGAAGTTGGTTCAAGAGCTTGAATTGTCGTTAAGTGAGATTTGTAAGGATATTGTGCTTTCTTTGAGGACCATAATGATTGTTCAAGATTTTTTTCCTATCAATATGGTTACAGCTGATGTTATTTTGGGGAGTTCAATCACTACAACTTAGTATCACCTTGAATGGTTCTAAAGTCGTTTTCATGGTGATCCTTCGTTAGTTCGTTCCCAAGTAACTTGAAGTCATTGGTTAAAGCTTTGAAGCTTGAAAAGCAGGGGTTTTTAGTTGAATTGAATGTGATGCAACAACATTCAGTTAAGAATGAAGGGTTGTGGGATGATGTACCTTCTGAGATCAGATCTGTTTCGGAGGCTCACTCCTCTATTTCCAGTCGTACCTATTCTTCTGCCAAATCGAGAGTTAGATCATGCAATAGAGTTGCTTCTTGGAACAGCTCCAATAAATGTCAGACCATACAGGCATCCCAGTTTCAAAAAGATGAAATTGAAAAGCTAGTTGAAAGATGTTAG

mRNA sequence

ATGACTACTCGAATGGAACCATTGGAAGCAAACATGGCGGATTTGTGGAATTTTGTTGGAAATATCTCTGAGCTGGTTGCACAGATGAAGAGGGTAGAACAGTACTTTGTCGTAAATCAATTGACTGATTCAGAGCAAGTAGAAGCTATTGTTCTCTGTTTGGATGGAGTTGGGTTAAAATGGCATCATTGGGAGAAGCGTCAACGGTCGATTGGAAGTTGGGAGCAGTTTCGTCGCCTTCTTCTGCAACGTTTTCTTCCGACTAAAGAAGTTCAAGATGAAGAAGTTGGAGTAGAAGAGCAAGTAGGGAAGTGGTCGTGCAGACTACAGAGATGGCCAGCGAATGTCCGTTGGGAGAAAGACCGCCGAAGAAGAAGTGGAGGTTGGACTGCATTCTATGGTCCATATCAAATCTCCGAAAACCATCAAGTTGACGGTTCGTTCCCAAGTAACTTGAAGTCATTGGTTAAAGCTTTGAAGCTTGAAAAGCAGGGGTTTTTAGTTGAATTGAATGTGATGCAACAACATTCAGTTAAGAATGAAGGGTTGTGGGATGATGTACCTTCTGAGATCAGATCTGTTTCGGAGGCTCACTCCTCTATTTCCAGTCGTACCTATTCTTCTGCCAAATCGAGAGTTAGATCATGCAATAGAGTTGCTTCTTGGAACAGCTCCAATAAATGTCAGACCATACAGGCATCCCAGTTTCAAAAAGATGAAATTGAAAAGCTAGTTGAAAGATGTTAG

Coding sequence (CDS)

ATGACTACTCGAATGGAACCATTGGAAGCAAACATGGCGGATTTGTGGAATTTTGTTGGAAATATCTCTGAGCTGGTTGCACAGATGAAGAGGGTAGAACAGTACTTTGTCGTAAATCAATTGACTGATTCAGAGCAAGTAGAAGCTATTGTTCTCTGTTTGGATGGAGTTGGGTTAAAATGGCATCATTGGGAGAAGCGTCAACGGTCGATTGGAAGTTGGGAGCAGTTTCGTCGCCTTCTTCTGCAACGTTTTCTTCCGACTAAAGAAGTTCAAGATGAAGAAGTTGGAGTAGAAGAGCAAGTAGGGAAGTGGTCGTGCAGACTACAGAGATGGCCAGCGAATGTCCGTTGGGAGAAAGACCGCCGAAGAAGAAGTGGAGGTTGGACTGCATTCTATGGTCCATATCAAATCTCCGAAAACCATCAAGTTGACGGTTCGTTCCCAAGTAACTTGAAGTCATTGGTTAAAGCTTTGAAGCTTGAAAAGCAGGGGTTTTTAGTTGAATTGAATGTGATGCAACAACATTCAGTTAAGAATGAAGGGTTGTGGGATGATGTACCTTCTGAGATCAGATCTGTTTCGGAGGCTCACTCCTCTATTTCCAGTCGTACCTATTCTTCTGCCAAATCGAGAGTTAGATCATGCAATAGAGTTGCTTCTTGGAACAGCTCCAATAAATGTCAGACCATACAGGCATCCCAGTTTCAAAAAGATGAAATTGAAAAGCTAGTTGAAAGATGTTAG

Protein sequence

MTTRMEPLEANMADLWNFVGNISELVAQMKRVEQYFVVNQLTDSEQVEAIVLCLDGVGLKWHHWEKRQRSIGSWEQFRRLLLQRFLPTKEVQDEEVGVEEQVGKWSCRLQRWPANVRWEKDRRRRSGGWTAFYGPYQISENHQVDGSFPSNLKSLVKALKLEKQGFLVELNVMQQHSVKNEGLWDDVPSEIRSVSEAHSSISSRTYSSAKSRVRSCNRVASWNSSNKCQTIQASQFQKDEIEKLVERC

Homology

[Close]

BLAST of Lag0036667 vs. NCBI nr
Match: XP_038904464.1 (uncharacterized protein LOC120090832 [Benincasa hispida])

HSP 1 Score: 76.6 bits (187), Expect = 3.3e-10
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 18  FVGNISE-LVAQMKRVEQYFVVNQLTDSEQVEAIVLCLDGVGLKWHHWEKRQRSIGSWEQ 77
           F G I E  +    RVE+YFVVN+L++ +++EA +LCL+G  L+WH WE+ +  + +W +
Sbjct: 116 FKGEIGEDPMGWFHRVERYFVVNRLSEKDKIEAAILCLEGEALEWHQWEEERTPMNTWAK 175

Query: 78  FRRLLLQRFLPTKE 91
           F+  LL RFLP KE
Sbjct: 176 FKAHLLLRFLPIKE 189

[Close]

BLAST of Lag0036667 vs. NCBI nr
Match: KAF4397259.1 (hypothetical protein G4B88_009105 [Cannabis sativa])

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-09
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 31  RVEQYFVVNQLTDSEQVEAIVLCLDGVGLKWHHWEKRQRSIGSWEQFRRLLLQRFLPTKE 90
           RVE+YF + +LT  EQ+EA VLCL+G  L+W  WE R+R I SW + + LLL+RFLP  E
Sbjct: 124 RVERYFGLQRLTAEEQLEAAVLCLEGPALRWFRWENRRREIRSWNELKDLLLRRFLPAHE 183

[Close]

BLAST of Lag0036667 vs. NCBI nr
Match: XP_030505320.1 (uncharacterized protein LOC115720307 [Cannabis sativa])

HSP 1 Score: 72.4 bits (176), Expect = 6.2e-09
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 31  RVEQYFVVNQLTDSEQVEAIVLCLDGVGLKWHHWEKRQRSIGSWEQFRRLLLQRFLPTKE 90
           R E+YF + +LT  EQ+EA VLCL+G  L+W  WE R+R I SW + + LLL+RFLP  E
Sbjct: 65  RAERYFGLQRLTAEEQLEAAVLCLEGPALRWFRWENRRREIRSWGELKDLLLRRFLPAHE 124

[Close]

BLAST of Lag0036667 vs. NCBI nr
Match: KAF4380195.1 (hypothetical protein G4B88_005652 [Cannabis sativa] >KAF4394552.1 hypothetical protein F8388_020377 [Cannabis sativa])

HSP 1 Score: 72.4 bits (176), Expect = 6.2e-09
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 31  RVEQYFVVNQLTDSEQVEAIVLCLDGVGLKWHHWEKRQRSIGSWEQFRRLLLQRFLPTKE 90
           R E+YF + +LT  EQ+EA VLCL+G  L+W  WE R+R I SW + + LLL+RFLP  E
Sbjct: 93  RAERYFGLQRLTAEEQLEAAVLCLEGPALRWFRWENRRREIRSWGELKDLLLRRFLPAHE 152

[Close]

BLAST of Lag0036667 vs. NCBI nr
Match: KAF4380570.1 (hypothetical protein G4B88_008721 [Cannabis sativa] >KAF4389557.1 hypothetical protein F8388_009690 [Cannabis sativa])

HSP 1 Score: 72.0 bits (175), Expect = 8.1e-09
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 31  RVEQYFVVNQLTDSEQVEAIVLCLDGVGLKWHHWEKRQRSIGSWEQFRRLLLQRFLPTKE 90
           R E+YF + +LT  EQ+EA +LCL+G  L+W  WE R+R I SW + + LLL+RFLP  E
Sbjct: 232 RAERYFGLQRLTAEEQLEAAILCLEGPALRWFRWENRRREIRSWGELKDLLLRRFLPAHE 291

[Close]

BLAST of Lag0036667 vs. ExPASy TrEMBL
Match: A0A7J6HRA8 (Retrotrans_gag domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_009105 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.0e-10
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 31  RVEQYFVVNQLTDSEQVEAIVLCLDGVGLKWHHWEKRQRSIGSWEQFRRLLLQRFLPTKE 90
           RVE+YF + +LT  EQ+EA VLCL+G  L+W  WE R+R I SW + + LLL+RFLP  E
Sbjct: 124 RVERYFGLQRLTAEEQLEAAVLCLEGPALRWFRWENRRREIRSWNELKDLLLRRFLPAHE 183

[Close]

BLAST of Lag0036667 vs. ExPASy TrEMBL
Match: A0A7J6GB68 (Retrotrans_gag domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_020377 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.0e-09
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 31  RVEQYFVVNQLTDSEQVEAIVLCLDGVGLKWHHWEKRQRSIGSWEQFRRLLLQRFLPTKE 90
           R E+YF + +LT  EQ+EA VLCL+G  L+W  WE R+R I SW + + LLL+RFLP  E
Sbjct: 93  RAERYFGLQRLTAEEQLEAAVLCLEGPALRWFRWENRRREIRSWGELKDLLLRRFLPAHE 152

[Close]

BLAST of Lag0036667 vs. ExPASy TrEMBL
Match: A0A7J6H2W9 (Retrotrans_gag domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_009690 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.9e-09
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 31  RVEQYFVVNQLTDSEQVEAIVLCLDGVGLKWHHWEKRQRSIGSWEQFRRLLLQRFLPTKE 90
           R E+YF + +LT  EQ+EA +LCL+G  L+W  WE R+R I SW + + LLL+RFLP  E
Sbjct: 232 RAERYFGLQRLTAEEQLEAAILCLEGPALRWFRWENRRREIRSWGELKDLLLRRFLPAHE 291

[Close]

BLAST of Lag0036667 vs. ExPASy TrEMBL
Match: A0A7J6FBK5 (Retrotrans_gag domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_002697 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.9e-09
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 31  RVEQYFVVNQLTDSEQVEAIVLCLDGVGLKWHHWEKRQRSIGSWEQFRRLLLQRFLPTKE 90
           R E+YF + +LT  EQ+EA +LCL+G  L+W  WE R+R I SW + + LLL+RFLP  E
Sbjct: 183 RAERYFGLQRLTAEEQLEAAILCLEGPALRWFRWENRRREIRSWGELKDLLLRRFLPAHE 242

[Close]

BLAST of Lag0036667 vs. ExPASy TrEMBL
Match: A0A7J6HY25 (Retrotrans_gag domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_021240 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.9e-09
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 31  RVEQYFVVNQLTDSEQVEAIVLCLDGVGLKWHHWEKRQRSIGSWEQFRRLLLQRFLPTKE 90
           R E+YF + +LT  EQ+EA +LCL+G  L+W  WE R+R I SW + + LLL+RFLP  E
Sbjct: 124 RAERYFGLQRLTAEEQLEAAILCLEGPALRWFRWENRRREIRSWGELKDLLLRRFLPAHE 183

[Close]

BLAST of Lag0036667 vs. TAIR 10
Match: AT1G67020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; Has 72 Blast hits to 72 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 8.9e-06
Identity = 24/66 (36.36%), Postives = 35/66 (53.03%), Query Frame = 0


Query: 31  RVEQYFVVNQLTDSEQVEAIVLCLDGVGLKWHHWEKRQRSIGSWEQFRRLLLQRFLPTKE 90
           +VE++F V +  DS++++ + L L+GV LKW   E        W  F + LL RF P K 
Sbjct: 126 KVERFFRVGRYQDSDKLDLVALSLEGVALKWFLREMSTLEFRDWNSFEQRLLARFDPVKI 185

Query: 91  VQDEEV 97
               EV
Sbjct: 186 HSSPEV 191

The following BLAST results are available for this feature:

BLAST of Lag0036667 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904464.1	3.3e-10	45.95	uncharacterized protein LOC120090832 [Benincasa hispida]	[more]
KAF4397259.1	1.2e-09	55.00	hypothetical protein G4B88_009105 [Cannabis sativa]	[more]
XP_030505320.1	6.2e-09	53.33	uncharacterized protein LOC115720307 [Cannabis sativa]	[more]
KAF4380195.1	6.2e-09	53.33	hypothetical protein G4B88_005652 [Cannabis sativa] >KAF4394552.1 hypothetical p...	[more]
KAF4380570.1	8.1e-09	51.67	hypothetical protein G4B88_008721 [Cannabis sativa] >KAF4389557.1 hypothetical p...	[more]

BLAST of Lag0036667 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0036667 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6HRA8	6.0e-10	55.00	Retrotrans_gag domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_009...	[more]
A0A7J6GB68	3.0e-09	53.33	Retrotrans_gag domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_020...	[more]
A0A7J6H2W9	3.9e-09	51.67	Retrotrans_gag domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_009...	[more]
A0A7J6FBK5	3.9e-09	51.67	Retrotrans_gag domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_002...	[more]
A0A7J6HY25	3.9e-09	51.67	Retrotrans_gag domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_021...	[more]

BLAST of Lag0036667 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67020.1	8.9e-06	36.36	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0036667.1	Lag0036667.1	mRNA