Lag0036645 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0036645
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr2: 127220 .. 130311 (-)
RNA-Seq Expression	Lag0036645
Synteny	Lag0036645

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTTTTCTGGGAAGGATCTAGAGGTGAGGGTGGTATGCACAATGTTAATTGGACTACTGCACGACTTCCTCAATTGTTGGGTGGCATTGGTATCGGTAGCTTCCAGCATCACAATTTAGCCCTTTTATCAAAATGGATTTGGAGATTCTTACATGAGGAGAATGCCCTTTGGTGTAAGTTCATTATAGCTAAATACTACAACTTGAAATGGTTTGTCTTTGGCCAAGAGTTATCCAAAGATGTGCTCACAAATCCCCATGGCGATTTATATTTTCTACCATTAATCTTGTATCTTCCGAGCCAATGATGTTTGGGTAATTGTCTTTCTACTCCTTTTTGGCATGATTCATGGTTACCTTGTGGAGTTCTTGCTACATTTTTCCTGTCTTTATCGTTTAACAAATAGGCCAAGGAGTATTGTTGGTGAGAATTGGATTGCTACACAATTAGCATTGGGACTTGAATCTTCGGCAAATTTAAATGATTCAGAAACATCAGAATAGGCCAACCTCTCCTATCTTCTTTCCTCCATAGATTTCGAAATTGTAATGATTCATGGTCATGACCCTTAGATCCATCCAATACTTTTATAGTAAAATCCCTTATAGACGATCTTGGACCAAATACTCATGTGAATGGTCTCTATAAGGTGATTTGGACGATTTTATCCTAAGAAGATTAGGATTTTTTATGAGAGCTTAGTCTTGGAGCAATAAATATAGCCAATCGTCTCAGAAACGTATGCCTCATTTCCACTTTCTCCATCTTGGTGCATCATGTGTGCTGCTAGTTATGAACATTCGGGACACTTTTTTTTTTTTTTTTTTTTTCATTACAATTTTGCATCTAGATATTGGGCATTGATCCTTGATGCCTTTGGATGGTCCACATAATACCGAATTGCATTCAGGACTCACTTGCTCTCATTTTTGTGGGTCATCCATTTCAGGGAGAAAAGAAGACCTTGTGGCTTGCTTTGAACAAAGTCTTTCTTTGGTATATATGGGCGAAAGGAATGGCAGAATTTTAGGGACTCTTTCTCTTCCTTTAACAATTTCATGGATTTAATTCTTTTTCAGGCTTTATATTGGTCTAAATGTAAACACCCTTTCTCTGATTATAGTTTGTCTTATTTGATTTTGAACTGTAAAGTTTTCTTCTAATTCACCTTTAGGTGTTTGGAGTTTTTTTCTCCTCATTTCATTCCTCAATGAAATTTGTTTCTCAAAAAATAATAATAATAATAAATTTTGATCTTCAACTCTGTGCGTCTCTGATTCGATTTAAAGCATTTGGTCATAACCCCACGCTTGCCTCATATATCTGGCATTGATGAATCACCTTCCAATACTTGCTGGTTTAAGTCTACCAAGGGTGCAGCCAAAGCTTCGAAATGGCTTTTTCCTCGAGGATGCTACCTTCCTGTTTACAGCTAGAAACTTCCCTGTAAAGTCTTCTTGAGATGACTGAAAGTTTGACAACAGTGGAACTTTATATTCCATCAATCCGGGATCATTTTTCACCCATCCATCCATTCAATCCAATTGAGTACTTCTAAATTGACATTTGTGGTCTCTAATTTTTCTGCTTCAGTAAGATGATTTAACTAGAAAGATCATTCTATGTTGAACACTCAACTGTTAGGATATCCCCTAGGGATAATTGGCAACTCCAAATATTCTTCTCGGACTTTGATGCAATCCTTCTCATTGGGACGAAGTATGTTTGAGTCTCCTTGTTCTATAATCAACGTAGAATTTGTTGCTACTTCATTTTGGTTCTCAAACTCACTTTAATGCCTCTTCTTCTATGCTTATTTTCTTTAGCAATTTTCTCTATCCATTCAAGCAACATTGCAGTATTTCTTCTCTATCACAAGAATTTTATGCAAATCTCGTTGGACCAAGCTAGAACTGAATATAACGTTTCTTCCACTGAGAACTAATTCGTCTTTTCATTTTCTTGCTTTGGCATTTCTCGAACTAGCTATAGCTCCAGTAAGAAAATGTTTGATTTCCATTACTACCACAGGAATATTAAGCTTTCCCAAGTATTCATGAGGGGTTGACTCTCCTTTACCCTAGAGTTTTTCTGCTCATCTCCACTTCTTTTAATTCGTGAGTAACTAGCTAGTTCCACAGCTAGCAAAAATATGTGGGTGACTAACATAGTTATGTAATTAGCTGCTTAACCATTCCGTCATTTGTTATTGTTGGGCCCCTAGTAAGGAGGGTATTGACCACCCGACAGTTGGTCAGTGGGTTGTATGTTTCCGTATGCCGGAAGTGAGGGCTGTAGGTGTCTTATGGCAGAGTAGTGTAGTGTAGTAGTCTTTTTTTTACATGGATTTACGTTGCGTAGAGAATTAGTCTCTTGAGAGGGTTTACTAGTCCTTTCGAATTTCCTGGGAGTTTTTCTCTTGTAACCTCAAGACTTTCTCCCTGTGTTGTTATTTGTGACTTGTAGCCATTTTCAGATTGTTAATCAAAGGTAGGGAAAATACCTTACAGCTATCTTATGTGTTATCAGCAACAACCAACCGTATGATGAACTCTCTCTCTTTCTCTTACATATGTATAACGTACTGTGGGCTTATATTAAACCTGTTGTTTAATTTGATTTTAATTTTCTTTATTATACCTATTTGAATTAATAATATTACATCAGTTTTTGCATATTTTCGGTCCTTAAGATGATTCTTTTTAATCATATTGAAATTAAGGTAATGCCTAATGAATCAGGATAAGGTATGGGAAAGTATTAAGGATTTGAAGTGGACTATATGAAAATTTTCTGCATTTAGTACAACTTGAGAGATGAGATGAGGGAGGGTTGATGAATAGGGGCTGAGGTTTGGATGGATTTATATTTAATGGCCAATTTTGATTCGACTTTGGATGCTTCAGGGAATATGGCTATGTGAGCACCGAGACCACCCCACTGCACGCAATATTGTGGTCACCCTCAATGGAATTTAGGTATATGCTAAGAGTTGGAGCTTCTGTCTATCCCGCCATTTCCCCTGGTTGTATCAATGTCAATAATAAACTGGTGTCTCGTTGCCTTCTTGGCAAAACTGGACTGTAG

mRNA sequence

ATGTCTTTTTTCTGGGAAGGATCTAGAGGTGAGGGTGGTATGCACAATGTTAATTGGACTACTGCACGACTTCCTCAATTGTTGGGTGGCATTGGTATCGGTAGCTTCCAGCATCACAATTTAGCCCTTTTATCAAAATGGATTTGGAGATTCTTACATGAGGAGAATGCCCTTTGGTATCCATCCAATACTTTTATAGTAAAATCCCTTATAGACGATCTTGGACCAAATACTCATGTGAATGGTCTCTATAAGGACTCACTTGCTCTCATTTTTGTGGGTCATCCATTTCAGGGAGAAAAGAAGACCTTGTGGCTTGCTTTGAACAAAGTCTTTCTTTGGATATCCCCTAGGGATAATTGGCAACTCCAAATATTCTTCTCGGACTTTGATGCAATCCTTCTCATTGGGACGAAGGAATATGGCTATGTGAGCACCGAGACCACCCCACTGCACGCAATATTGTGGTCACCCTCAATGGAATTTAGGTATATGCTAAGAGTTGGAGCTTCTGTCTATCCCGCCATTTCCCCTGGTTGTATCAATGTCAATAATAAACTGGTGTCTCGTTGCCTTCTTGGCAAAACTGGACTGTAG

Coding sequence (CDS)

ATGTCTTTTTTCTGGGAAGGATCTAGAGGTGAGGGTGGTATGCACAATGTTAATTGGACTACTGCACGACTTCCTCAATTGTTGGGTGGCATTGGTATCGGTAGCTTCCAGCATCACAATTTAGCCCTTTTATCAAAATGGATTTGGAGATTCTTACATGAGGAGAATGCCCTTTGGTATCCATCCAATACTTTTATAGTAAAATCCCTTATAGACGATCTTGGACCAAATACTCATGTGAATGGTCTCTATAAGGACTCACTTGCTCTCATTTTTGTGGGTCATCCATTTCAGGGAGAAAAGAAGACCTTGTGGCTTGCTTTGAACAAAGTCTTTCTTTGGATATCCCCTAGGGATAATTGGCAACTCCAAATATTCTTCTCGGACTTTGATGCAATCCTTCTCATTGGGACGAAGGAATATGGCTATGTGAGCACCGAGACCACCCCACTGCACGCAATATTGTGGTCACCCTCAATGGAATTTAGGTATATGCTAAGAGTTGGAGCTTCTGTCTATCCCGCCATTTCCCCTGGTTGTATCAATGTCAATAATAAACTGGTGTCTCGTTGCCTTCTTGGCAAAACTGGACTGTAG

Protein sequence

MSFFWEGSRGEGGMHNVNWTTARLPQLLGGIGIGSFQHHNLALLSKWIWRFLHEENALWYPSNTFIVKSLIDDLGPNTHVNGLYKDSLALIFVGHPFQGEKKTLWLALNKVFLWISPRDNWQLQIFFSDFDAILLIGTKEYGYVSTETTPLHAILWSPSMEFRYMLRVGASVYPAISPGCINVNNKLVSRCLLGKTGL

Homology

[Close]

BLAST of Lag0036645 vs. NCBI nr
Match: KAA0041081.1 (Myb_DNA-bind_6 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-11
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 3   FFWEGSRGEGGMHNVNWTTARLPQLLGGIGIGSFQHHNLALLSKWIWRFLHEENALW 60
           FFW+G +G  GMHNV+W T +  +L+GG+GIG+F   N  LL+KWIWRFLH  NAL+
Sbjct: 825 FFWDGDQGMDGMHNVDWETTQRARLMGGLGIGNFSVCNCVLLAKWIWRFLHGSNALF 881

[Close]

BLAST of Lag0036645 vs. NCBI nr
Match: TYK12026.1 (Homeodomain-like superfamily protein, putative isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-11
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 3   FFWEGSRGEGGMHNVNWTTARLPQLLGGIGIGSFQHHNLALLSKWIWRFLHEENALW 60
           FFW+G +G  GMHNV+W T +  +L+GG+GIG+F   N  LL+KWIWRFLH  NAL+
Sbjct: 317 FFWDGDQGMDGMHNVDWETTQRARLMGGLGIGNFSVCNCVLLAKWIWRFLHGSNALF 373

[Close]

BLAST of Lag0036645 vs. NCBI nr
Match: KAA0055821.1 (uncharacterized protein E6C27_scaffold181G002160 [Cucumis melo var. makuwa] >TYK10072.1 uncharacterized protein E5676_scaffold16G002110 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 2.4e-11
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 3   FFWEGSRGEGGMHNVNWTTARLPQLLGGIGIGSFQHHNLALLSKWIWRFLHEENAL 59
           FFW+G++    MHNV+W T    +L+GG+GIG++   NLALL+KWIWRFLHE NAL
Sbjct: 200 FFWDGAQSMNDMHNVSWETTLHARLMGGLGIGNYCVRNLALLAKWIWRFLHESNAL 255

[Close]

BLAST of Lag0036645 vs. NCBI nr
Match: CCA66153.1 (hypothetical protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 72.8 bits (177), Expect = 3.8e-09
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 3   FFWEGSRGEGGMHNVNWTTARLPQLLGGIGIGSFQHHNLALLSKWIWRFLHEENALW 60
           F W G+  + GM  V+W    LP+ LGG+G+G+  H N ALL KWIWRFL+E +ALW
Sbjct: 821 FLWSGNSSKKGMPLVSWDLIALPKHLGGLGLGNLHHKNTALLFKWIWRFLNEPHALW 877

[Close]

BLAST of Lag0036645 vs. NCBI nr
Match: XP_034926097.1 (uncharacterized protein LOC118057579 [Populus alba])

HSP 1 Score: 72.8 bits (177), Expect = 3.8e-09
Identity = 32/80 (40.00%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 3   FFWEGSRGEGGMHNVNWTTARLPQLLGGIGIGSFQHHNLALLSKWIWRFLHEENALWYPS 62
           F W G      + NV W T  +P+  GG+GIGS Q+ N ALL KW+WR+  EE+++W   
Sbjct: 131 FLWSGKEEGKSICNVGWPTVSMPKSAGGLGIGSLQNKNKALLFKWLWRYGSEESSMWKDV 190

Query: 63  NTFIVKSLIDDLGPNTHVNG 83
            T I       L P  H+ G
Sbjct: 191 ITSIYNPKYHSLIPQDHITG 210

[Close]

BLAST of Lag0036645 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.3e-04
Identity = 21/58 (36.21%), Postives = 33/58 (56.90%), Query Frame = 0


Query: 2   SFFWEGSRGEGGMHNVNWTTARLPQLLGGIGIGSFQHHNLALLSKWIWRFLHEENALW 60
           +F W  +  +   H V W+    P+  GG+G+ + +  N AL+SK  WR L E+N+LW
Sbjct: 72  TFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLW 129

[Close]

BLAST of Lag0036645 vs. ExPASy TrEMBL
Match: A0A5A7THE0 (Myb_DNA-bind_6 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold477G00540 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.1e-12
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 3   FFWEGSRGEGGMHNVNWTTARLPQLLGGIGIGSFQHHNLALLSKWIWRFLHEENALW 60
           FFW+G +G  GMHNV+W T +  +L+GG+GIG+F   N  LL+KWIWRFLH  NAL+
Sbjct: 825 FFWDGDQGMDGMHNVDWETTQRARLMGGLGIGNFSVCNCVLLAKWIWRFLHGSNALF 881

[Close]

BLAST of Lag0036645 vs. ExPASy TrEMBL
Match: A0A5D3CNM9 (Homeodomain-like superfamily protein, putative isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00370 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.1e-12
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 3   FFWEGSRGEGGMHNVNWTTARLPQLLGGIGIGSFQHHNLALLSKWIWRFLHEENALW 60
           FFW+G +G  GMHNV+W T +  +L+GG+GIG+F   N  LL+KWIWRFLH  NAL+
Sbjct: 317 FFWDGDQGMDGMHNVDWETTQRARLMGGLGIGNFSVCNCVLLAKWIWRFLHGSNALF 373

[Close]

BLAST of Lag0036645 vs. ExPASy TrEMBL
Match: A0A5A7UQH4 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002110 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-11
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 3   FFWEGSRGEGGMHNVNWTTARLPQLLGGIGIGSFQHHNLALLSKWIWRFLHEENAL 59
           FFW+G++    MHNV+W T    +L+GG+GIG++   NLALL+KWIWRFLHE NAL
Sbjct: 200 FFWDGAQSMNDMHNVSWETTLHARLMGGLGIGNYCVRNLALLAKWIWRFLHESNAL 255

[Close]

BLAST of Lag0036645 vs. ExPASy TrEMBL
Match: F4NCK1 (Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-09
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 3   FFWEGSRGEGGMHNVNWTTARLPQLLGGIGIGSFQHHNLALLSKWIWRFLHEENALW 60
           F W G+  + GM  V+W    LP+ LGG+G+G+  H N ALL KWIWRFL+E +ALW
Sbjct: 821 FLWSGNSSKKGMPLVSWDLIALPKHLGGLGLGNLHHKNTALLFKWIWRFLNEPHALW 877

[Close]

BLAST of Lag0036645 vs. ExPASy TrEMBL
Match: A0A5D3DZ07 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1810G00070 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.1e-09
Identity = 30/62 (48.39%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 2    SFFWEGSRGEGGMHNVNWTTARLPQLLGGIGIGSFQHHNLALLSKWIWRFLHEENALWYP 61
            +F W+GS G  G H +NWT    P+  GG+GI   Q  N ALL+KW+WR+  E NALW  
Sbjct: 1131 NFLWKGSNGSKGSHLINWTKVTKPKEEGGLGISRLQVTNKALLTKWLWRYYSEPNALWEE 1190

Query: 62   SN 64
             N
Sbjct: 1191 VN 1192

The following BLAST results are available for this feature:

BLAST of Lag0036645 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041081.1	1.1e-11	57.89	Myb_DNA-bind_6 domain-containing protein [Cucumis melo var. makuwa]	[more]
TYK12026.1	1.1e-11	57.89	Homeodomain-like superfamily protein, putative isoform 2 [Cucumis melo var. maku...	[more]
KAA0055821.1	2.4e-11	58.93	uncharacterized protein E6C27_scaffold181G002160 [Cucumis melo var. makuwa] >TYK...	[more]
CCA66153.1	3.8e-09	52.63	hypothetical protein [Beta vulgaris subsp. vulgaris]	[more]
XP_034926097.1	3.8e-09	40.00	uncharacterized protein LOC118057579 [Populus alba]	[more]

BLAST of Lag0036645 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	1.3e-04	36.21	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of Lag0036645 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7THE0	5.1e-12	57.89	Myb_DNA-bind_6 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CNM9	5.1e-12	57.89	Homeodomain-like superfamily protein, putative isoform 2 OS=Cucumis melo var. ma...	[more]
A0A5A7UQH4	1.1e-11	58.93	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
F4NCK1	1.8e-09	52.63	Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris...	[more]
A0A5D3DZ07	4.1e-09	48.39	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Lag0036645 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0036645.1	Lag0036645.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006139	nucleobase-containing compound metabolic process
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003676	nucleic acid binding