Lag0036605 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0036605
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon gag protein
Locationchr3: 49154609 .. 49155754 (-)
RNA-Seq ExpressionLag0036605
SyntenyLag0036605
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACGAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCCTGCAAATGAAGGATTTGATCAAGACATGACAAAGATAAGAGCTTTTAAATGTAAAAGCTCCTTGTCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAAAATCTTGAACTACGTTATGACTTGATCCCTTTTCTTCAAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTGCAAACAAAAAAAAAGGAAAGTGCAACAAATATTGAAGCACGACGATATAAATTGAGGAAATTCATCACTAGTGGGGGCAACACAGCGAATGGAAGTTGCTTCCTCCAAGTTCGAAGGTTCCCACGCGCTTCGCTGCAGTTCCTTCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAATTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCGTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCACTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCGCGCGCTTCGATGCAGTTCCTTCCTCCAAGTTTGAAGGTTTTCACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTGCCACGCGCTTCGCTATGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCATGCTCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTTCACGCGCTTCGTTGCAGTTCCTGCCTCCAAGTTCGAAGGTTCTCACGCGCTTCATTGTCGTTCCTTCCTCCAAGTTTGAAGGTTCTCACGCGCTTCGCTGTAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCATCGCTCATGCGCTTCGCTGCAGCTCCTTCCTCCAAGTTTGA

mRNA sequence

ATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACGAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCCTGCAAATGAAGGATTTGATCAAGACATGACAAAGATAAGAGCTTTTAAATGTAAAAGCTCCTTGTCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGCGAATGGAAGTTGCTTCCTCCAAGTTCGAAGGTTCCCACGCGCTTCGCTGCAGTTCCTTCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAATTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCGTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCACTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCGCGCGCTTCGATGCAGTTCCTTCCTCCAAGTTTGAAGGTTTTCACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTGCCACGCGCTTCGCTATGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCATGCTCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTTCACGCGCTTCGTTGCAGTTCCTGCCTCCAAGTTCGAAGGTTCTCACGCGCTTCATTGTCGTTCCTTCCTCCAAGTTTGAAGGTTCTCACGCGCTTCGCTGTAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCATCGCTCATGCGCTTCGCTGCAGCTCCTTCCTCCAAGTTTGA

Coding sequence (CDS)

ATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACGAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCCTGCAAATGAAGGATTTGATCAAGACATGACAAAGATAAGAGCTTTTAAATGTAAAAGCTCCTTGTCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGCGAATGGAAGTTGCTTCCTCCAAGTTCGAAGGTTCCCACGCGCTTCGCTGCAGTTCCTTCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAATTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCGTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCACTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCGCGCGCTTCGATGCAGTTCCTTCCTCCAAGTTTGAAGGTTTTCACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTGCCACGCGCTTCGCTATGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCATGCTCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTTCACGCGCTTCGTTGCAGTTCCTGCCTCCAAGTTCGAAGGTTCTCACGCGCTTCATTGTCGTTCCTTCCTCCAAGTTTGAAGGTTCTCACGCGCTTCGCTGTAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCATCGCTCATGCGCTTCGCTGCAGCTCCTTCCTCCAAGTTTGA

Protein sequence

MNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEGFDQDMTKIRAFKCKSSLSQEPKLHDAPSPHELKSEWKLLPPSSKVPTRFAAVPSPKFEGSHALRCSSFLTVRRFSRASLQFLPPSSKVLTRFVQFLPPNSKVLTRFAAVPSPKFEGSHALHCSSFLQVQRFSRASMQFLPPSLKVFTRFVAVPSSKFEGCHALRYAIPSPKFEGSHALRAVPSSKFEGSHALRCSSFLQVRRFSRASLQFLPPSSKVLTRFIVVPSSKFEGSHALRCSSFPPSSKVLTSLRIAHALRCSSFLQV
Homology
[Close]
BLAST of Lag0036605 vs. NCBI nr
Match: KAA0068201.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21121.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 3.2e-10
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 0 

Query: 1   MNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEGFDQ 60
           M +L+ K F E N D+K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG +Q
Sbjct: 316 MKSLKAKPFHEKNDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFTNPINEGDEQ 374

[Close]
BLAST of Lag0036605 vs. NCBI nr
Match: KAA0063700.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 4.2e-10
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 0 

Query: 1   MNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEGFDQ 60
           M +L+ KLF E N D  +HS +PSRMKRK S+ INTEGSL VKP  II TNP NEG +Q
Sbjct: 339 MKSLKAKLFHEENDDNTIHSCVPSRMKRKLSIDINTEGSLTVKPRFIIFTNPTNEGDEQ 397

[Close]
BLAST of Lag0036605 vs. NCBI nr
Match: TYK28989.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 4.2e-10
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 0 

Query: 1   MNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEGFDQ 60
           M +L+ K F E N D+K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG +Q
Sbjct: 405 MKSLKAKPFCEKNDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFTNPTNEGDEQ 463

[Close]
BLAST of Lag0036605 vs. NCBI nr
Match: KAA0061331.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK14685.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 7.2e-10
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 0 

Query: 1   MNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG 57
           M +L+ K F E N D+K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG
Sbjct: 341 MKSLKAKPFHEENDDDKIHSCVPSRMKRKLSVDINTEGSLTVKPRFIIFTNPTNEG 396

[Close]
BLAST of Lag0036605 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 9.4e-10
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 0 

Query: 1   MNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG 57
           M +L+ K F E N D+K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG
Sbjct: 205 MKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFTNPINEG 260

[Close]
BLAST of Lag0036605 vs. ExPASy TrEMBL
Match: A0A5A7VRG7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G001010 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-10
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 0 

Query: 1   MNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEGFDQ 60
           M +L+ K F E N D+K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG +Q
Sbjct: 316 MKSLKAKPFHEKNDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFTNPINEGDEQ 374

[Close]
BLAST of Lag0036605 vs. ExPASy TrEMBL
Match: A0A5A7V935 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G002200 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-10
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 0 

Query: 1   MNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEGFDQ 60
           M +L+ KLF E N D  +HS +PSRMKRK S+ INTEGSL VKP  II TNP NEG +Q
Sbjct: 339 MKSLKAKLFHEENDDNTIHSCVPSRMKRKLSIDINTEGSLTVKPRFIIFTNPTNEGDEQ 397

[Close]
BLAST of Lag0036605 vs. ExPASy TrEMBL
Match: A0A5D3DZZ8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00890 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-10
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 0 

Query: 1   MNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEGFDQ 60
           M +L+ K F E N D+K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG +Q
Sbjct: 405 MKSLKAKPFCEKNDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFTNPTNEGDEQ 463

[Close]
BLAST of Lag0036605 vs. ExPASy TrEMBL
Match: A0A5A7V6H5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00040 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.5e-10
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 0 

Query: 1   MNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG 57
           M +L+ K F E N D+K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG
Sbjct: 341 MKSLKAKPFHEENDDDKIHSCVPSRMKRKLSVDINTEGSLTVKPRFIIFTNPTNEG 396

[Close]
BLAST of Lag0036605 vs. ExPASy TrEMBL
Match: A0A5D3BBF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00250 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.6e-10
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 0 

Query: 1   MNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG 57
           M +L+ K F E N D+K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG
Sbjct: 146 MKSLKAKPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFTNPINEG 201

The following BLAST results are available for this feature:
BLAST of Lag0036605 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0068201.13.2e-1064.41retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21121.1 retrotranspos... [more]
KAA0063700.14.2e-1062.71ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK28989.14.2e-1064.41retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0061331.17.2e-1066.07ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK14685.1 ty3-gyp... [more]
KAA0044978.19.4e-1066.07retrotransposon gag protein [Cucumis melo var. makuwa][more]
BLAST of Lag0036605 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0036605 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VRG71.6e-1064.41Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7V9352.0e-1062.71Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3DZZ82.0e-1064.41Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7V6H53.5e-1066.07Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3BBF94.6e-1066.07Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
BLAST of Lag0036605 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0036605.1Lag0036605.1mRNA