Lag0036549 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0036549
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr3: 48304617 .. 48305346 (+)
RNA-Seq ExpressionLag0036549
SyntenyLag0036549
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACCCTTTATCCTCGTACTTGTTCTTAATTTGTGCATAGGGTCTTTCATGTATGCTCAACAAAGCAGAAAGGATGAGGAAATTTACAGGTTTGCGTATCAATAACTATTGTCCTACTATTACTCATCTCTTTTATGCTGATGATAGTCTCTTGTTTTTTAAGGCTATGGATAAAGATTGCAGGTCTATTAAAAAGCTTCTTCTCAGTTATGAAATGGCTTCAGGGCAAACCATTAATTTTGAGAAGTCTTCTTTTATGGCAAGCCCAAACACAAAGCTTCCTCAAGTTGACAAAATCAAGGAGCTCCTGGGGGTCCAACATAAGGAGAGCTTTGGTCAATATCTAGGCTTGCCGTCTCAAATGGGTAGGAGCAAGAAGGAAGTTTTGACAACATCAAGGATCGCGTTTAGGAAGCTTTACAAGGATGGAAAGGGAAGTTCTTCTCGATTGCGGGGAGAGAAATTCTCATTAAATCTATTGCTCAAGCGATTCCTAACTACGCTATGAGTAGTTTTAAATTTCCTACTTCGTTGTGTAATGAATTAAATTCCATTTGTGCTAGGTTCTGGTGGGGTGCTACAGACACATGAAGGAAAATACATTGGCGCAGTTGGAAAAAGCTCTGTCTACATAAGCATCAGGGGGTTTGGGCTTTCGAGACTTACAAATCTTCAATCGAGCTATGTTGTCAAAGCAAAGTTGGAGGATCGTTCACAACCCGAATAG

mRNA sequence

ATGGGACCCTTTATCCTCGTACTTGTTCTTAATTTGTGCATAGGGTCTTTCATGTATGCTCAACAAAGCAGAAAGGATGAGGAAATTTACAGGTCTATTAAAAAGCTTCTTCTCAGTTATGAAATGGCTTCAGGGCAAACCATTAATTTTGAGAAGTCTTCTTTTATGGCAAGCCCAAACACAAAGCTTCCTCAAGTTGACAAAATCAAGGAGCTCCTGGGGGTCCAACATAAGGAGAGCTTTGGTCAATATCTAGGCTTGCCGTCTCAAATGGGTAGGAGCAAGAAGGAAGTTTTGACAACATCAAGGATCGCGTTTAGGAAGCTTTACAAGGATGGAAAGGGAAGTTCTGGTGGGGTGCTACAGACACATGAAGGAAAATACATTGGCGCAGTTGGAAAAAGCTCTGTCTACATAAGCATCAGGGGGTTTGGGCTTTCGAGACTTACAAATCTTCAATCGAGCTATGTTGTCAAAGCAAAGTTGGAGGATCGTTCACAACCCGAATAG

Coding sequence (CDS)

ATGGGACCCTTTATCCTCGTACTTGTTCTTAATTTGTGCATAGGGTCTTTCATGTATGCTCAACAAAGCAGAAAGGATGAGGAAATTTACAGGTCTATTAAAAAGCTTCTTCTCAGTTATGAAATGGCTTCAGGGCAAACCATTAATTTTGAGAAGTCTTCTTTTATGGCAAGCCCAAACACAAAGCTTCCTCAAGTTGACAAAATCAAGGAGCTCCTGGGGGTCCAACATAAGGAGAGCTTTGGTCAATATCTAGGCTTGCCGTCTCAAATGGGTAGGAGCAAGAAGGAAGTTTTGACAACATCAAGGATCGCGTTTAGGAAGCTTTACAAGGATGGAAAGGGAAGTTCTGGTGGGGTGCTACAGACACATGAAGGAAAATACATTGGCGCAGTTGGAAAAAGCTCTGTCTACATAAGCATCAGGGGGTTTGGGCTTTCGAGACTTACAAATCTTCAATCGAGCTATGTTGTCAAAGCAAAGTTGGAGGATCGTTCACAACCCGAATAG

Protein sequence

MGPFILVLVLNLCIGSFMYAQQSRKDEEIYRSIKKLLLSYEMASGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQYLGLPSQMGRSKKEVLTTSRIAFRKLYKDGKGSSGGVLQTHEGKYIGAVGKSSVYISIRGFGLSRLTNLQSSYVVKAKLEDRSQPE
Homology
BLAST of Lag0036549 vs. NCBI nr
Match: XP_012087680.1 (uncharacterized protein LOC105646435 [Jatropha curcas])

HSP 1 Score: 75.1 bits (183), Expect = 6.5e-10
Identity = 48/110 (43.64%), Postives = 66/110 (60.00%), Query Frame = 0

Query: 14  IGSFMYAQQSRKDEEIYRSIKKLLLSYEMASGQTINFEKSSFMASPNTKLPQVDKIKELL 73
           IG  +  +  R ++   R++K +LL+YE ASGQ I+ +KSS   S NT   + D I   L
Sbjct: 108 IGPIVPTRGLRAEDSEERTLKHILLAYEQASGQEISLQKSSITFSANTPASRRDLICNTL 167

Query: 74  GVQHKESFGQYLGLPSQMGRSKKEVL--TTSRIAFRKL--YKDGKGSSGG 120
           GV+ K+S G YLGLPS +GR K+EV      RI +RK+  +KDG  S  G
Sbjct: 168 GVEEKDSLGCYLGLPSHVGRKKREVFGYLKDRI-WRKVSSWKDGMLSRAG 216

BLAST of Lag0036549 vs. NCBI nr
Match: XP_022157437.1 (uncharacterized protein LOC111024135 [Momordica charantia])

HSP 1 Score: 75.1 bits (183), Expect = 6.5e-10
Identity = 47/93 (50.54%), Postives = 57/93 (61.29%), Query Frame = 0

Query: 31  RSIKKLLLSYEMA-SGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQYLGLPS 90
           RSIK +L SYE A SGQ IN +KS F+ S NTK   V  I++ L V H ES GQYLGLPS
Sbjct: 517 RSIKGILESYEKASSGQCINLDKSMFIVSKNTKEQMVGVIRQELMVNHTESLGQYLGLPS 576

Query: 91  QMGRSKKEVLTTSRIAFRKLYKDGKG---SSGG 120
           Q GR+K++V    +    K  +  KG   S GG
Sbjct: 577 QTGRNKRQVFNNIKDRVWKALQGWKGKLFSMGG 609

BLAST of Lag0036549 vs. NCBI nr
Match: XP_019199805.1 (PREDICTED: uncharacterized protein LOC109193404 [Ipomoea nil])

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-08
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 0

Query: 24  RKDEEIYRSIKKLLLSYEMASGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQ 83
           + +EE    +KK L  YE  SGQ +N+ KS+   S NT++   D + ++LGV    +FG+
Sbjct: 392 KANEEEANGVKKCLSEYESLSGQVVNYHKSNICYSKNTRIIDRDNVAQVLGVAQAPNFGK 451

Query: 84  YLGLPSQMGRSKK 97
           YLGLPS MGR+KK
Sbjct: 452 YLGLPSFMGRNKK 464

BLAST of Lag0036549 vs. NCBI nr
Match: XP_019159987.1 (PREDICTED: uncharacterized protein LOC109156589 [Ipomoea nil])

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-08
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 0

Query: 33  IKKLLLSYEMASGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQYLGLPSQMG 92
           IK+ L+ YE  SGQ +N+ KSS   S NT++PQ +++   LGV+   SFG+YLGLPS +G
Sbjct: 179 IKQCLIRYEKLSGQVVNYNKSSICLSRNTQMPQREQVAWCLGVELASSFGKYLGLPSFIG 238

Query: 93  RSKKEV 99
           R+K+ V
Sbjct: 239 RNKRAV 244

BLAST of Lag0036549 vs. NCBI nr
Match: RHN78164.1 (putative RNA-directed DNA polymerase [Medicago truncatula])

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-07
Identity = 34/85 (40.00%), Postives = 53/85 (62.35%), Query Frame = 0

Query: 16  SFMYAQQSRKDEEIYRSIKKLLLSYEMASGQTINFEKSSFMASPNTKLPQVDKIKELLGV 75
           SF++ Q +  + +   ++K++LL YE ASGQ IN+ KS+   S NT+   +  I  +LGV
Sbjct: 126 SFLFCQATTSETQ---ALKEILLHYEHASGQAINYNKSAIAFSTNTQHDLISTITNILGV 185

Query: 76  QHKESFGQYLGLPSQMGRSKKEVLT 101
                 G+YLGLPS +GR+KK + +
Sbjct: 186 YGSIGSGKYLGLPSMVGRNKKAIFS 207

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_012087680.16.5e-1043.64uncharacterized protein LOC105646435 [Jatropha curcas][more]
XP_022157437.16.5e-1050.54uncharacterized protein LOC111024135 [Momordica charantia][more]
XP_019199805.13.6e-0845.21PREDICTED: uncharacterized protein LOC109193404 [Ipomoea nil][more]
XP_019159987.13.6e-0850.00PREDICTED: uncharacterized protein LOC109156589 [Ipomoea nil][more]
RHN78164.11.4e-0740.00putative RNA-directed DNA polymerase [Medicago truncatula][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33116:SF45SUBFAMILY NOT NAMEDcoord: 23..100
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 23..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0036549.1Lag0036549.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity