Lag0036417 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0036417
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionHomeobox-leucine zipper protein
Locationchr3: 46202234 .. 46204304 (+)
RNA-Seq ExpressionLag0036417
SyntenyLag0036417
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCCAGTACAAAACTTTGTAAGAGTAGAAACGCTACCAAGTGGGTATTTGATAAGACTTTGTGAAGGTGGCAGATCCATAATCGATATCGTTGATCGCATGGAATTAGAAGTATGTAAAACTTCTTTGTATTTAAAGCAGTCATTCTTAATCTCTGATTTCCAAATTTATAATTTTACCCATTGTTTACTTGAAAATCGTCTTGGAGCGTGCCAGAAGTGTTGCAAAAATTATACAAGTCGTCTACTCTGCTGCTCAAAAGAAGTGTTGCAACAATTATACAAGTAGCCTTGGTAGAGTAAGTAATCTTTTTTTTTTCTTCTTCTTCTTCCAATTATGGTGTAGGATTAATTTGGTGTTTATACAAGATTATCTTATTTCTATTCGATTTATGTGTATATACATATTTGTTTCGAAGCCAGCCTATATTTTTAGTTAGTTATATCAGCTTAGTTCTTTTAACACTCAGATTCTATCTATTCTTTATACGGTACAAACTGTTACAAAGGCTTTAAACCATTCATGATTAAGATTCTTATTTTCATATAGGTCGTTCGGGCTGACATAAATGTGGATTTTTCTCCCGACCTGATTGCAAATCAACTCAATATCTGTGATGGAGCTCTAATCCTGCAGGTTGATTCTCCATAGTCAATATGTGCTTCTACATTAGGATTTTTCATGTTGTTCTTGCTTAACTTTTTTTAACTAAAAGTTGTCTCTATCTAAAAGGTTACTCTGTACTAGATTCATTTGTGGTCAATGGATTCCAATTGGTTTGTTGTGAATGAAGATGATGACATCTTTAGTTGTCGTGTTTCAGGTATGCTTATTTTTTCTTATGGTTCCTAATTCATTGTCATGTGACTTGATTGTTGAATTTTCCAGCACATAAAGATTTGAATTTTATATGGTGAAAAAGAAAAAGATTTGAATTTGATACATTTTAAGTATGTTGAAATGACAAGTTGGGTCTAATATTATTGCAAATGTATCCATCAAAATGTTGATTCATCTTGAGGAGAATAGCCCCAGTTATTGACTAGAAGCAATTGATTTATGTGGCTTTCAGGCATTGAAATACTCATCCATGGTCTTTTAGCATGGCTAACTAGTGTCCTCTTAAACCATAATAATTGTCCTCTAGCCATTTTCTAATGCTACAAACTGTATTACTTTCAACTTAGTTCCATGTTGAGTCATGTAGATACATTATCTCTTTTGGTGTAAGTTCCTTTTTCGGTGGCTAATAAGAGGATAAATGTACTTTTAATAGGATGTGTTAAGAGTATCACTTATCAAAAGACTTGTAAAATTCTTAACACTGGCTGGCTTAGAGAGTATCACTTATCAAAAGACTTGTAAGTTCCTTATGAATGACCCATTCTATTTTGTGTTGTATAATTGTCCTCTAGCCATGGTAAATCTTTTGCAAGTTTTAAATGTAAATAAGGATGTTGCGCTATCTTAGCAAGTTTTCATCCCAAAACACATACATGAATGCCACTACCCCTCTTCTTATAAATTAGTTAAGTATTGTTATTATGGTCATAAGTATTGATAAGTTTAATTGTTCGTCCGTCCTATTTTGTTGAGTTTAATATTTATGTTCATGATAAGTCTAGTTGATATGTTCCTAAGTTTTGATGAGCTTAGTTTAATTGTTATATTCACGTTTTGATAACTTTAATAATTCGTGTTAGTTTTTTATGAGTCTAATATTTGTGCTCATTTTAAGTTTGGTTGTTATGTTCTTAAGTTTTTCTAAGTTTTGTTTAATTGTTATGTTCATGATTTTTTATAAGTTATTTAAGAGTTTGATATTGATATTCAATAAAGTTTTATAACTTTAGTTGTTTGCGTTAATTTGATGAGTTTAGTTGTCTATGTTTCTCTGAGTATATGCTATTCATACCTCAAATCTTAAATCTCTTGCTTTCCTTATTTGTATTGTTTCTTATGGTCAGATTTGTTGTTCCTATGCCTCGCCAATGACTTCAAGTACAAATTGCACCACGTTCAATCAACTTTCAAAGAGTTGTTTGTTGTTGTGTACTATTTGTCATAG

mRNA sequence

ATGCCTCCAGTACAAAACTTTGTAAGAGTAGAAACGCTACCAAGTGGGTATTTGATAAGACTTTGTGAAGGTGGCAGATCCATAATCGATATCGTTGATCGCATGGAATTAGAACGTGCCAGAAGTGTTGCAAAAATTATACAAGTCGTCTACTCTGCTGCTCAAAAGAAGTGTTGCAACAATTATACAAGTAGCCTTGGTAGAGTCGTTCGGGCTGACATAAATGTGGATTTTTCTCCCGACCTGATTGCAAATCAACTCAATATCTGTGATGGAGCTCTAATCCTGCAGATTCATTTGTGGTCAATGGATTCCAATTGGTTTGTTGTGAATGAAGATGATGACATCTTTAGTTGTCGTGTTTCAGATTTGTTGTTCCTATGCCTCGCCAATGACTTCAAGTACAAATTGCACCACGTTCAATCAACTTTCAAAGAGTTGTTTGTTGTTGTGTACTATTTGTCATAG

Coding sequence (CDS)

ATGCCTCCAGTACAAAACTTTGTAAGAGTAGAAACGCTACCAAGTGGGTATTTGATAAGACTTTGTGAAGGTGGCAGATCCATAATCGATATCGTTGATCGCATGGAATTAGAACGTGCCAGAAGTGTTGCAAAAATTATACAAGTCGTCTACTCTGCTGCTCAAAAGAAGTGTTGCAACAATTATACAAGTAGCCTTGGTAGAGTCGTTCGGGCTGACATAAATGTGGATTTTTCTCCCGACCTGATTGCAAATCAACTCAATATCTGTGATGGAGCTCTAATCCTGCAGATTCATTTGTGGTCAATGGATTCCAATTGGTTTGTTGTGAATGAAGATGATGACATCTTTAGTTGTCGTGTTTCAGATTTGTTGTTCCTATGCCTCGCCAATGACTTCAAGTACAAATTGCACCACGTTCAATCAACTTTCAAAGAGTTGTTTGTTGTTGTGTACTATTTGTCATAG

Protein sequence

MPPVQNFVRVETLPSGYLIRLCEGGRSIIDIVDRMELERARSVAKIIQVVYSAAQKKCCNNYTSSLGRVVRADINVDFSPDLIANQLNICDGALILQIHLWSMDSNWFVVNEDDDIFSCRVSDLLFLCLANDFKYKLHHVQSTFKELFVVVYYLS
Homology
[Close]
BLAST of Lag0036417 vs. NCBI nr
Match: CAA2965472.1 (homeobox-leucine zipper ATHB-15 [Olea europaea subsp. europaea])

HSP 1 Score: 69.3 bits (168), Expect = 3.3e-08
Identity = 35/50 (70.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 1   MPPVQNFVRVETLPSGYLIRLCEGGRSIIDIVDRMELERARSVAKIIQVV 51
           MPPVQNFVR E LPSGYLIR CEGG SII IVD M LE  R + +I Q V
Sbjct: 285 MPPVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMNLEALRQLRQIAQDV 334

[Close]
BLAST of Lag0036417 vs. NCBI nr
Match: XP_009600774.1 (homeobox-leucine zipper protein ATHB-15-like [Nicotiana tomentosiformis] >XP_016459078.1 PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X1 [Nicotiana tabacum])

HSP 1 Score: 68.9 bits (167), Expect = 4.3e-08
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 0 

Query: 1   MPPVQNFVRVETLPSGYLIRLCEGGRSIIDIVDRMELERARSVAKIIQVVYSAA 55
           MPPVQNFVR E LPSGYLIR CEGG SI+ IVD M+LE A SV ++++ +Y ++
Sbjct: 299 MPPVQNFVRAEMLPSGYLIRPCEGGGSIVHIVDHMDLE-AWSVPEVLRPLYESS 351

[Close]
BLAST of Lag0036417 vs. NCBI nr
Match: XP_024930942.1 (homeobox-leucine zipper protein ATHB-8 [Ziziphus jujuba])

HSP 1 Score: 68.9 bits (167), Expect = 4.3e-08
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 0 

Query: 1  MPPVQNFVRVETLPSGYLIRLCEGGRSIIDIVDRMELERARSVAKIIQVVYSAA 55
          MPPVQNFVR E LPSGYLIR CEGG SII +VD MELE   SV ++++ +Y ++
Sbjct: 45 MPPVQNFVRAEMLPSGYLIRACEGGGSIIHVVDHMELE-PWSVPEVLRPLYESS 97

[Close]
BLAST of Lag0036417 vs. NCBI nr
Match: KAF3446397.1 (hypothetical protein FNV43_RR11576 [Rhamnella rubrinervis])

HSP 1 Score: 68.9 bits (167), Expect = 4.3e-08
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 0 

Query: 1   MPPVQNFVRVETLPSGYLIRLCEGGRSIIDIVDRMELERARSVAKIIQVVYSAA 55
           MPPVQNFVR E LPSGYLIR CEGG SII +VD MELE   SV ++++ +Y ++
Sbjct: 302 MPPVQNFVRAEMLPSGYLIRACEGGGSIIHVVDHMELE-PWSVPEVLRPLYESS 354

[Close]
BLAST of Lag0036417 vs. NCBI nr
Match: XP_042021293.1 (homeobox-leucine zipper protein ATHB-15-like isoform X2 [Salvia splendens])

HSP 1 Score: 68.9 bits (167), Expect = 4.3e-08
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 0 

Query: 1   MPPVQNFVRVETLPSGYLIRLCEGGRSIIDIVDRMELERARSVAKIIQVVYSAA 55
           MPPVQNFVR E LPSGYLIR CEGG SII IVD M LE A SV ++++ +Y ++
Sbjct: 312 MPPVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMNLE-ALSVPEVLRPLYESS 364

[Close]
BLAST of Lag0036417 vs. ExPASy Swiss-Prot
Match: Q9ZU11 (Homeobox-leucine zipper protein ATHB-15 OS=Arabidopsis thaliana OX=3702 GN=ATHB-15 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-08
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 0 

Query: 1   MPPVQNFVRVETLPSGYLIRLCEGGRSIIDIVDRMELERARSVAKIIQVVYSA 54
           MP VQNFVR E L SGYLIR C+GG SII IVD M+LE A SV ++++ +Y +
Sbjct: 300 MPLVQNFVRAEMLSSGYLIRPCDGGGSIIHIVDHMDLE-ACSVPEVLRPLYES 351

[Close]
BLAST of Lag0036417 vs. ExPASy Swiss-Prot
Match: Q39123 (Homeobox-leucine zipper protein ATHB-8 OS=Arabidopsis thaliana OX=3702 GN=ATHB-8 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.9e-08
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 0 

Query: 1   MPPVQNFVRVETLPSGYLIRLCEGGRSIIDIVDRMELERARSVAKIIQVVYSAA 55
           MPP  +FVR E LPSGYLIR CEGG SI+ IVD  +LE   SV ++++ +Y ++
Sbjct: 299 MPPSPHFVRAEILPSGYLIRPCEGGGSILHIVDHFDLE-PWSVPEVLRSLYESS 351

[Close]
BLAST of Lag0036417 vs. ExPASy Swiss-Prot
Match: A2Z8L4 (Homeobox-leucine zipper protein HOX9 OS=Oryza sativa subsp. indica OX=39946 GN=HOX9 PE=2 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-07
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 0 

Query: 5   QNFVRVETLPSGYLIRLCEGGRSIIDIVDRMELERARSVAKIIQVVYSAAQKKCCNNYTS 64
           Q FVR E LPSGYL+R CEGG SI+ IVD ++LE A SV ++++ +Y +++       T+
Sbjct: 310 QQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLE-AWSVPEVLRPLYESSRVVAQKMTTA 369

Query: 65  SLGRV 70
           +L  +
Sbjct: 370 ALRHI 373

[Close]
BLAST of Lag0036417 vs. ExPASy Swiss-Prot
Match: Q9AV49 (Homeobox-leucine zipper protein HOX9 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX9 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-07
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 0 

Query: 5   QNFVRVETLPSGYLIRLCEGGRSIIDIVDRMELERARSVAKIIQVVYSAAQKKCCNNYTS 64
           Q FVR E LPSGYL+R CEGG SI+ IVD ++LE A SV ++++ +Y +++       T+
Sbjct: 310 QQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLE-AWSVPEVLRPLYESSRVVAQKMTTA 369

Query: 65  SLGRV 70
           +L  +
Sbjct: 370 ALRHI 373

[Close]
BLAST of Lag0036417 vs. ExPASy Swiss-Prot
Match: A2XK30 (Homeobox-leucine zipper protein HOX32 OS=Oryza sativa subsp. indica OX=39946 GN=HOX32 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.9e-07
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 2   PPVQNFVRVETLPSGYLIRLCEGGRSIIDIVDRMELERARSVAKIIQVVYSA 54
           P   NFVR E LPSGYLIR CEGG S+I IVD ++L+ A SV ++++ +Y +
Sbjct: 321 PNTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLD-AWSVPEVLRPLYES 371

The following BLAST results are available for this feature:
BLAST of Lag0036417 vs. NCBI nr
Match NameE-valueIdentityDescription
CAA2965472.13.3e-0870.00homeobox-leucine zipper ATHB-15 [Olea europaea subsp. europaea][more]
XP_009600774.14.3e-0862.96homeobox-leucine zipper protein ATHB-15-like [Nicotiana tomentosiformis] >XP_016... [more]
XP_024930942.14.3e-0862.96homeobox-leucine zipper protein ATHB-8 [Ziziphus jujuba][more]
KAF3446397.14.3e-0862.96hypothetical protein FNV43_RR11576 [Rhamnella rubrinervis][more]
XP_042021293.14.3e-0864.81homeobox-leucine zipper protein ATHB-15-like isoform X2 [Salvia splendens][more]
BLAST of Lag0036417 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZU111.5e-0860.38Homeobox-leucine zipper protein ATHB-15 OS=Arabidopsis thaliana OX=3702 GN=ATHB-... [more]
Q391239.9e-0853.70Homeobox-leucine zipper protein ATHB-8 OS=Arabidopsis thaliana OX=3702 GN=ATHB-8... [more]
A2Z8L41.7e-0744.62Homeobox-leucine zipper protein HOX9 OS=Oryza sativa subsp. indica OX=39946 GN=H... [more]
Q9AV491.7e-0744.62Homeobox-leucine zipper protein HOX9 OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
A2XK302.9e-0753.85Homeobox-leucine zipper protein HOX32 OS=Oryza sativa subsp. indica OX=39946 GN=... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002913START domainPFAMPF01852STARTcoord: 2..66
e-value: 2.5E-8
score: 33.6
NoneNo IPR availablePANTHERPTHR45950:SF13CLASS III HD-ZIP PROTEIN CNA1coord: 1..55
NoneNo IPR availableSUPERFAMILY55961Bet v1-likecoord: 1..39
IPR044830Class III homeodomain-leucine zipper familyPANTHERPTHR45950HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0036417.1Lag0036417.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030154 cell differentiation
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0008289 lipid binding