Lag0036316 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0036316
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr3: 43861243 .. 43861551 (+)
RNA-Seq ExpressionLag0036316
SyntenyLag0036316
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGACAAGCAATATAAAGAAGGTGAATAGAGTTCGGGGTCTCTTTAAGGTGAATGGGGTTTGGTTGGAGAAGGATAAGGAAATGGAGGAAGTAGCTAATAACTATTTCCAAGAGCTCTTCCAATCCTCTATGCCACAGATGGACGCTATTGAAGAAATTTTGAAGGCAACCCCTAAGTGTCTAACGGAGGAGCAAAATGTGAAGCTTACTTCCAATTTTACGAGGGAGGAGATTCATAGAGTTATAAAAAGCATGCACCCTACCAAAGCCCCAAACCCGGATGGAATTCAAGCCATTTTCTATTAG

mRNA sequence

ATGAAGACAAGCAATATAAAGAAGGTGAATAGAGTTCGGGGTCTCTTTAAGGTGAATGGGGTTTGGTTGGAGAAGGATAAGGAAATGGAGGAAGTAGCTAATAACTATTTCCAAGAGCTCTTCCAATCCTCTATGCCACAGATGGACGCTATTGAAGAAATTTTGAAGGCAACCCCTAAGTGTCTAACGGAGGAGCAAAATGTGAAGCTTACTTCCAATTTTACGAGGGAGGAGATTCATAGAGTTATAAAAAGCATGCACCCTACCAAAGCCCCAAACCCGGATGGAATTCAAGCCATTTTCTATTAG

Coding sequence (CDS)

ATGAAGACAAGCAATATAAAGAAGGTGAATAGAGTTCGGGGTCTCTTTAAGGTGAATGGGGTTTGGTTGGAGAAGGATAAGGAAATGGAGGAAGTAGCTAATAACTATTTCCAAGAGCTCTTCCAATCCTCTATGCCACAGATGGACGCTATTGAAGAAATTTTGAAGGCAACCCCTAAGTGTCTAACGGAGGAGCAAAATGTGAAGCTTACTTCCAATTTTACGAGGGAGGAGATTCATAGAGTTATAAAAAGCATGCACCCTACCAAAGCCCCAAACCCGGATGGAATTCAAGCCATTTTCTATTAG

Protein sequence

MKTSNIKKVNRVRGLFKVNGVWLEKDKEMEEVANNYFQELFQSSMPQMDAIEEILKATPKCLTEEQNVKLTSNFTREEIHRVIKSMHPTKAPNPDGIQAIFY
Homology
BLAST of Lag0036316 vs. NCBI nr
Match: XP_010686122.1 (PREDICTED: uncharacterized protein LOC104900404 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 101.7 bits (252), Expect = 3.9e-18
Identity = 47/101 (46.53%), Postives = 67/101 (66.34%), Query Frame = 0

Query: 2   KTSNIKKVNRVRGLFKVNGVWLEKDKEMEEVANNYFQELFQSSMPQMDAIEEILKATPKC 61
           K S  KK NR++GLF  +G W E+++E+E +   YF+E+F SS P   A++E+L+   K 
Sbjct: 551 KASQRKKRNRIKGLFDEHGEWREEEEELERLVQKYFREIFTSSDPSTGAMDEVLQFVKKS 610

Query: 62  LTEEQNVKLTSNFTREEIHRVIKSMHPTKAPNPDGIQAIFY 103
           +T E N  L   +++EEIH  +K MHP KAP PDG+ AIFY
Sbjct: 611 VTTEFNDILLKPYSKEEIHEALKQMHPCKAPGPDGLHAIFY 651

BLAST of Lag0036316 vs. NCBI nr
Match: XP_024195622.1 (uncharacterized protein LOC112198734 [Rosa chinensis])

HSP 1 Score: 94.0 bits (232), Expect = 8.1e-16
Identity = 41/101 (40.59%), Postives = 65/101 (64.36%), Query Frame = 0

Query: 2   KTSNIKKVNRVRGLFKVNGVWLEKDKEMEEVANNYFQELFQSSMPQMDAIEEILKATPKC 61
           K +N K+ N + GL+  NGVW + DK ME++  +YF ++F SS   M+A+   L+A   C
Sbjct: 315 KAANRKRKNVIHGLYDENGVWRDDDKGMEQIVTSYFTQMFTSSPIDMEAMHHTLEAIQPC 374

Query: 62  LTEEQNVKLTSNFTREEIHRVIKSMHPTKAPNPDGIQAIFY 103
           ++ E N++L  N+T EEI   +  M+PTK+P PDG+  +F+
Sbjct: 375 VSAEMNLQLCRNYTEEEIREALFQMYPTKSPGPDGMAPLFF 415

BLAST of Lag0036316 vs. NCBI nr
Match: XP_012844095.1 (PREDICTED: uncharacterized protein LOC105964130 [Erythranthe guttata])

HSP 1 Score: 93.6 bits (231), Expect = 1.1e-15
Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = 0

Query: 2   KTSNIKKVNRVRGLFKVNGVWLEKDKEMEEVANNYFQELFQSSMPQMDAIEEILKATPKC 61
           K S+ +KVN + GL    GVW EKD +ME +   YF+++F SS P  D + E+L++    
Sbjct: 24  KASSRRKVNTISGLQDRAGVWREKDDDMETIVLEYFRDIFTSSNPSDDELNEVLESVESR 83

Query: 62  LTEEQNVKLTSNFTREEIHRVIKSMHPTKAPNPDGIQAIFY 103
           +  E N +LT ++T EEI+R ++ MHP K+P+PDG   IFY
Sbjct: 84  VGPEINYELTRDYTAEEINRALEGMHPLKSPSPDGFPVIFY 124

BLAST of Lag0036316 vs. NCBI nr
Match: CAA7030928.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-14
Identity = 44/93 (47.31%), Postives = 62/93 (66.67%), Query Frame = 0

Query: 10  NRVRGLFKVNGVWLEKDKEMEEVANNYFQELFQSSMPQMDAIEEILKATPKCLTEEQNVK 69
           NR+  L + NG+W EK + +E+ A  YFQ+LF SS PQ  + ++ L+  PK +T E N  
Sbjct: 6   NRITRLKRANGMWAEKQEHIEQTAIEYFQDLFTSSQPQ--SFDDALRFVPKKVTPEMNQF 65

Query: 70  LTSNFTREEIHRVIKSMHPTKAPNPDGIQAIFY 103
           LT   + EEIH+ IK M+P KAP+PDGI ++FY
Sbjct: 66  LTKPPSNEEIHQAIKEMNPDKAPDPDGITSLFY 96

BLAST of Lag0036316 vs. NCBI nr
Match: XP_023881891.1 (uncharacterized protein LOC111994244 [Quercus suber])

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-14
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = 0

Query: 2   KTSNIKKVNRVRGLFKVNGVWLEKDKEMEEVANNYFQELFQSSMPQMDAIEEILKATPKC 61
           K S+ ++ N + G+   NG W +  + + +VA +YFQ ++ SS+P    I E+L A P  
Sbjct: 198 KASDRRRRNTINGIMDENGNWQDSTEGIAKVAVSYFQTIYSSSVP--TRISEVLDAIPTT 257

Query: 62  LTEEQNVKLTSNFTREEIHRVIKSMHPTKAPNPDGIQAIFY 103
           +TEE N  L   FTREEI   +  MHPTKAP PDG+ AIF+
Sbjct: 258 VTEEMNHSLIQEFTREEIETALNQMHPTKAPGPDGMSAIFF 296

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_010686122.13.9e-1846.53PREDICTED: uncharacterized protein LOC104900404 [Beta vulgaris subsp. vulgaris][more]
XP_024195622.18.1e-1640.59uncharacterized protein LOC112198734 [Rosa chinensis][more]
XP_012844095.11.1e-1543.56PREDICTED: uncharacterized protein LOC105964130 [Erythranthe guttata][more]
CAA7030928.11.2e-1447.31unnamed protein product [Microthlaspi erraticum][more]
XP_023881891.11.5e-1443.56uncharacterized protein LOC111994244 [Quercus suber][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 5..102
NoneNo IPR availablePANTHERPTHR19446:SF440SUBFAMILY NOT NAMEDcoord: 5..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0036316.1Lag0036316.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity