Lag0036293 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0036293
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr3: 43564689 .. 43565192 (+)
RNA-Seq ExpressionLag0036293
SyntenyLag0036293
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGAAACGATCTTAGAACAAGTTTTACACTGTACCACTGCAAAAGAAATTTGGTCATATCTTCTTCAGATTTTTAATTCTAGACACCTAGCACAGATAATGAAGATTAAAGTCAAATTACAGAATATACAAAAAGGAGGATCGTCTATGAATGAGTATGTATCGAAAATTAAAAAATGCATTGATGCCCTAGCTGCAATAGGAAAAACAGTCCTTGTGGAAGATCATATTATGTATATTTTGGCTGGATTGGGATCTGAATATGAAATAATAGTTTATGTTATTACTGCCAAGACTAGTACTCAAAATGTGCAAGATGTTATTGCTTTATTACTAACACATGAGAGTAGAATCGAAAGCAAAAATTCAATCAATGCAGATGGAGTCCTTCCTACAGCAAATCTTATAGTACAAAATCGTATTCAGAAGGAAAATGATTCTCAGAAATTGATAAATCAGAAGCAACAACAGCAAAATTTTGGTAATAATAGAGGTAGATGA

mRNA sequence

ATGACTGAAACGATCTTAGAACAAGTTTTACACTGTACCACTGCAAAAGAAATTTGGTCATATCTTCTTCAGATTTTTAATTCTAGACACCTAGCACAGATAATGAAGATTAAAGTCAAATTACAGAATATACAAAAAGGAGGATCGTCTATGAATGAGTATGTATCGAAAATTAAAAAATGCATTGATGCCCTAGCTGCAATAGGAAAAACAGTCCTTGTGGAAGATCATATTATGTATATTTTGGCTGGATTGGGATCTGAATATGAAATAATAGTTTATGTTATTACTGCCAAGACTAGTACTCAAAATGTGCAAGATGTTATTGCTTTATTACTAACACATGAGAGTAGAATCGAAAGCAAAAATTCAATCAATGCAGATGGAGTCCTTCCTACAGCAAATCTTATAGTACAAAATCGTATTCAGAAGGAAAATGATTCTCAGAAATTGATAAATCAGAAGCAACAACAGCAAAATTTTGGTAATAATAGAGGTAGATGA

Coding sequence (CDS)

ATGACTGAAACGATCTTAGAACAAGTTTTACACTGTACCACTGCAAAAGAAATTTGGTCATATCTTCTTCAGATTTTTAATTCTAGACACCTAGCACAGATAATGAAGATTAAAGTCAAATTACAGAATATACAAAAAGGAGGATCGTCTATGAATGAGTATGTATCGAAAATTAAAAAATGCATTGATGCCCTAGCTGCAATAGGAAAAACAGTCCTTGTGGAAGATCATATTATGTATATTTTGGCTGGATTGGGATCTGAATATGAAATAATAGTTTATGTTATTACTGCCAAGACTAGTACTCAAAATGTGCAAGATGTTATTGCTTTATTACTAACACATGAGAGTAGAATCGAAAGCAAAAATTCAATCAATGCAGATGGAGTCCTTCCTACAGCAAATCTTATAGTACAAAATCGTATTCAGAAGGAAAATGATTCTCAGAAATTGATAAATCAGAAGCAACAACAGCAAAATTTTGGTAATAATAGAGGTAGATGA

Protein sequence

MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKTSTQNVQDVIALLLTHESRIESKNSINADGVLPTANLIVQNRIQKENDSQKLINQKQQQQNFGNNRGR
Homology
BLAST of Lag0036293 vs. NCBI nr
Match: XP_022136882.1 (dr1-associated corepressor homolog isoform X1 [Momordica charantia])

HSP 1 Score: 143.7 bits (361), Expect = 1.5e-30
Identity = 78/160 (48.75%), Postives = 111/160 (69.38%), Query Frame = 0

Query: 1   MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKK 60
           M E IL +++HC TA+E+W  L  ++ SR+LA++M++K KL+NI+KG   + +Y  K+K 
Sbjct: 15  MFEEILGEMIHCNTAREVWQILENLYTSRNLARVMQLKSKLENIKKGNLPLKDYFQKVKA 74

Query: 61  CIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKTSTQNVQDVIALLLTHESRIE 120
            +D+LAA GK V VEDHIM+IL GL SE+E  V VI+A+T TQ +Q+V +LLL+HE R E
Sbjct: 75  LVDSLAAAGKKVTVEDHIMHILTGLRSEFESTVSVISARTQTQTLQEVYSLLLSHEGRNE 134

Query: 121 SKNSINADGVLPTANLIVQNRIQKENDSQKLINQKQQQQN 161
            +NSIN DG LP+ NL  Q +    N +Q +  Q+   QN
Sbjct: 135 -RNSINTDGTLPSVNLTQQTK--NSNSAQSIDGQRPYMQN 171

BLAST of Lag0036293 vs. NCBI nr
Match: XP_022136883.1 (dr1-associated corepressor homolog isoform X2 [Momordica charantia])

HSP 1 Score: 143.7 bits (361), Expect = 1.5e-30
Identity = 78/160 (48.75%), Postives = 111/160 (69.38%), Query Frame = 0

Query: 1   MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKK 60
           M E IL +++HC TA+E+W  L  ++ SR+LA++M++K KL+NI+KG   + +Y  K+K 
Sbjct: 15  MFEEILGEMIHCNTAREVWQILENLYTSRNLARVMQLKSKLENIKKGNLPLKDYFQKVKA 74

Query: 61  CIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKTSTQNVQDVIALLLTHESRIE 120
            +D+LAA GK V VEDHIM+IL GL SE+E  V VI+A+T TQ +Q+V +LLL+HE R E
Sbjct: 75  LVDSLAAAGKKVTVEDHIMHILTGLRSEFESTVSVISARTQTQTLQEVYSLLLSHEGRNE 134

Query: 121 SKNSINADGVLPTANLIVQNRIQKENDSQKLINQKQQQQN 161
            +NSIN DG LP+ NL  Q +    N +Q +  Q+   QN
Sbjct: 135 -RNSINTDGTLPSVNLTQQTK--NSNSAQSIDGQRPYMQN 171

BLAST of Lag0036293 vs. NCBI nr
Match: KAA0045111.1 (putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa] >TYK23627.1 putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 140.6 bits (353), Expect = 1.2e-29
Identity = 74/141 (52.48%), Postives = 106/141 (75.18%), Query Frame = 0

Query: 1   MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKK 60
           M E IL Q+LHCT+AK+IW  L  I++SR+LA+ M+ K KL N++KG  S+ EY  KI++
Sbjct: 241 MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQ 300

Query: 61  CIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKTSTQNVQDVIALLLTHESRIE 120
           C+DALA+I K +  +DHI+YILAGLG+EY+ ++ VI+A+T + +VQDV++LLLT ES+IE
Sbjct: 301 CVDALASINKPISTDDHILYILAGLGNEYQSMISVISARTDSPSVQDVMSLLLTQESQIE 360

Query: 121 SKNSINADGVLPTANLIVQNR 142
           SK  I ++  LPT N+    R
Sbjct: 361 SK--ITSEVSLPTVNMTTHAR 379

BLAST of Lag0036293 vs. NCBI nr
Match: KAA0046195.1 (putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa] >TYK14162.1 putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa])

HSP 1 Score: 137.9 bits (346), Expect = 8.1e-29
Identity = 74/151 (49.01%), Postives = 111/151 (73.51%), Query Frame = 0

Query: 1   MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKK 60
           M+E IL Q+LH T+AK+IW  L  I++SR+LA+ M+ K KL N++KG  S+ EY  KI++
Sbjct: 82  MSEDILNQMLHFTSAKQIWKTLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKEYFLKIQQ 141

Query: 61  CIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKTSTQNVQDVIALLLTHESRIE 120
           C+DALA+I K +  +DHI+YILAGLG+EY+ I+ +I+A+T + +VQD ++LLLT ES+IE
Sbjct: 142 CVDALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSLLLTQESQIE 201

Query: 121 SKNSINADGVLPTANLIVQNR----IQKEND 148
           SK  I ++  LPT N+    R    ++KE++
Sbjct: 202 SK--ITSEVSLPTVNMTTHTRDISSLEKESE 230

BLAST of Lag0036293 vs. NCBI nr
Match: XP_022158089.1 (uncharacterized protein LOC111024658 [Momordica charantia])

HSP 1 Score: 136.7 bits (343), Expect = 1.8e-28
Identity = 78/174 (44.83%), Postives = 116/174 (66.67%), Query Frame = 0

Query: 1   MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKK 60
           M E IL  +LHC+TAKEIW  L Q+F +++L ++M++K +LQN++KGG S+ EY+ +IK 
Sbjct: 1   MAEEILADLLHCSTAKEIWVSLQQMFATQNLTKVMQLKTQLQNLRKGGLSLKEYIRQIKN 60

Query: 61  CIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKTSTQNVQDVIALLLTHESRIE 120
            +D+L A GK++  EDHIM+IL+GLGSEYE  V VIT K     +QDV ALLL+H+ RIE
Sbjct: 61  LVDSLKAAGKSMNTEDHIMHILSGLGSEYESTVSVITVKKGPLTIQDVTALLLSHQRRIE 120

Query: 121 SKNSINADGVLPTANLIVQNRIQKENDSQKLI-------NQKQQQQNFGNNRGR 168
            + S   D  LP+A++ + ++   +N+    +       ++ QQ  +  NNRGR
Sbjct: 121 KEISAAKDVTLPSASINLAHQQFGQNNQNNSVSYNSNDNHRYQQHYSNDNNRGR 174

BLAST of Lag0036293 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.5e-06
Identity = 42/158 (26.58%), Postives = 81/158 (51.27%), Query Frame = 0

Query: 9   VLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAI 68
           V   TTA +IW  L +I+ +     + +++ +L+   KG  ++++Y+  +    D LA +
Sbjct: 100 VSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDDYMQGLVTRFDQLALL 159

Query: 69  GKTVLVEDHIMYILAGLGSEYEIIVYVITAKTSTQNVQDVIALLLTHESRIESKNSINAD 128
           GK +  ++ +  +L  L  EY+ ++  I AK +   + ++   LL HES+I + +S    
Sbjct: 160 GKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHERLLNHESKILAVSSAT-- 219

Query: 129 GVLP-TANLIV-QNRIQKENDSQKLINQKQQQQNFGNN 165
            V+P TAN +  +N     N++    N +   +N  NN
Sbjct: 220 -VIPITANAVSHRNTTTTNNNNNGNRNNRYDNRNNNNN 254

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022136882.11.5e-3048.75dr1-associated corepressor homolog isoform X1 [Momordica charantia][more]
XP_022136883.11.5e-3048.75dr1-associated corepressor homolog isoform X2 [Momordica charantia][more]
KAA0045111.11.2e-2952.48putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa] >TYK236... [more]
KAA0046195.18.1e-2949.01putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa] >TYK14162.1 p... [more]
XP_022158089.11.8e-2844.83uncharacterized protein LOC111024658 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Q94HW24.5e-0626.58Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 1..119
e-value: 5.4E-20
score: 71.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..167
NoneNo IPR availablePANTHERPTHR34222:SF48SUBFAMILY NOT NAMEDcoord: 2..166
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 2..166

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0036293.1Lag0036293.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034641 cellular nitrogen compound metabolic process
biological_process GO:0071704 organic substance metabolic process
molecular_function GO:0005488 binding
molecular_function GO:0016740 transferase activity