Lag0036288 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0036288
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	HIG1 domain-containing protein
Location	chr3: 43428737 .. 43430225 (+)
RNA-Seq Expression	Lag0036288
Synteny	Lag0036288

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGAATCCAAGGGCAAACTCGAATCTCTCAGGGAGTGGGTTTCCGAGCACAAGCTTCGCACCGTCGGTAAATCTACTCATTCAATCGTCTCCTCTATTTCTTTTTTTTGTCCTTGGTTTCTGATTTTCGGTTGATTTTTTGTAATCTTCTTATTACAAGGAGGAGTTTCGTTTTGGGTTATAATTGAATTGTTCTTGTTGTTTGGGGTGAAGGGTCTCTGTGGCTTAGCGGAATTGCGGGTTCTATTGCGTACAATTGGTCTCAACCTAATATGAAGACCAGCGTGAAGATCATCCACGCTAGGTGAGTTTCTGATTTTGTGTTTAATTGTTGATGTTTTTCCATAATTCTGGATTTCGGGTTCTGCTAATGCGGCTGCATATTTATGGAGATTTTATTCTGGAATGAATGATTGAATTAACCTAATTGGCTGATTGTCTGTATAAGCCATCCCTCTTTTGGGGATCTTGCCGAGTTTTAAAATCTTGAGGCTAAATTTCATTGAAAGATGCTTTGGATGGCTTGGGAAGGTTACGGTTGTTGTGTACTTAATTATTAAGTCTATGATTTTGAAAGAACAAACACCTATTAGATTATGTTTTTTTCTTAAGCTTTTGTTTTAAAATTCTAAAAGCTGTATTTGGGAACTTCTCTTAGGCAGCATCCAGTCCTTTTTTCTTCCTCCTTATACCTTGTTCTATGATGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTAACTCAACAACAATTCACGAGGGATTTGAACCTCTGTCCTCCTGGTCAGGGTCTATATCAATTATCGCTAAGCTATGCTCACCTTGGTATAGCTTTGTTCTTTGCTTGGCTGATGAACACCAAAACACTCTTATCTTGTGTGCTTTTCTTTTAATTGATTAAGGATACAGTTTTAACCTCTTTTTGGCTATGTGATCAGAAGTATTTACATGTATGTTACTAATCATCTTTCAATTTATTTGATATTGCCACCTTTATGATAAGGATTAAACATGGAATTTAGTGGAAGTTTGACAATTACAATTGAGATATCAAGCATAGATGACCAAGAATAGAATATTAGGGATCAAAATGAAAAACTTGACAGAAGTTTGAGGACGAAAACCTCATTTGAACTATTTGTTTTATTTTTTTCCTTTGATATTTTTTCTTGGCGCATTCTGAAAGTAGGAGAAATCAGAGGTCTTTGTTTAAGGGGCAGATGCTTTGAAGTTTTTCTATAACACAACGTTTTAAATGGCTTATATTGGCATTCTTTTCCATGTTTTTGTGTATGATTTCTGATCCTGATGTGTGGTTCTTCAAAATCACTGTCAGGTTGCACGCACAGGCTTTGACCTTAGCCGCTCTTGCTGGTGCTGCTGTCGTTGAATATTATGAACACAAATCAGGAGCGAAGGCTGAGCGATATGCCAAGTTCCTTCCAATTGATAACTACTCACACAAAGACTAA

mRNA sequence

ATGGCCGAATCCAAGGGCAAACTCGAATCTCTCAGGGAGTGGGTTTCCGAGCACAAGCTTCGCACCGTCGGGTCTCTGTGGCTTAGCGGAATTGCGGGTTCTATTGCGTACAATTGGTCTCAACCTAATATGAAGACCAGCGTGAAGATCATCCACGCTAGGTTGCACGCACAGGCTTTGACCTTAGCCGCTCTTGCTGGTGCTGCTGTCGTTGAATATTATGAACACAAATCAGGAGCGAAGGCTGAGCGATATGCCAAGTTCCTTCCAATTGATAACTACTCACACAAAGACTAA

Coding sequence (CDS)

ATGGCCGAATCCAAGGGCAAACTCGAATCTCTCAGGGAGTGGGTTTCCGAGCACAAGCTTCGCACCGTCGGGTCTCTGTGGCTTAGCGGAATTGCGGGTTCTATTGCGTACAATTGGTCTCAACCTAATATGAAGACCAGCGTGAAGATCATCCACGCTAGGTTGCACGCACAGGCTTTGACCTTAGCCGCTCTTGCTGGTGCTGCTGTCGTTGAATATTATGAACACAAATCAGGAGCGAAGGCTGAGCGATATGCCAAGTTCCTTCCAATTGATAACTACTCACACAAAGACTAA

Protein sequence

MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQALTLAALAGAAVVEYYEHKSGAKAERYAKFLPIDNYSHKD

Homology

[Close]

BLAST of Lag0036288 vs. NCBI nr
Match: XP_022145879.1 (uncharacterized protein LOC111015231 [Momordica charantia])

HSP 1 Score: 196.4 bits (498), Expect = 1.1e-46
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60
          MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL
Sbjct: 1  MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPIDNYSHKD 99
          TLAALAGAAVVEYYEHKSGAKAERYAKFLPIDNYSHKD
Sbjct: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPIDNYSHKD 98

[Close]

BLAST of Lag0036288 vs. NCBI nr
Match: XP_022961523.1 (uncharacterized protein LOC111462074 [Cucurbita moschata] >XP_023515964.1 uncharacterized protein LOC111779972 [Cucurbita pepo subsp. pepo] >KAG6590446.1 hypothetical protein SDJN03_15869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196.1 bits (497), Expect = 1.5e-46
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60
          MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL
Sbjct: 1  MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPIDNYSHKD 99
          TLAALAGAAVVEYYEHKSGAKAERYAKFLP+DNYSHKD
Sbjct: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD 98

[Close]

BLAST of Lag0036288 vs. NCBI nr
Match: XP_022924720.1 (uncharacterized protein LOC111432132 [Cucurbita moschata] >XP_022970205.1 uncharacterized protein LOC111469164 [Cucurbita maxima] >XP_023530300.1 uncharacterized protein LOC111792905 [Cucurbita pepo subsp. pepo] >KAG6588489.1 hypothetical protein SDJN03_17054, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022318.1 hypothetical protein SDJN02_16049 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.4 bits (490), Expect = 9.5e-46
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60
          MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL
Sbjct: 1  MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPIDNYSHKD 99
          TLAALAGAAVVEYYEHKSGAKAERYAKFLPIDNYS KD
Sbjct: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPIDNYSRKD 98

[Close]

BLAST of Lag0036288 vs. NCBI nr
Match: XP_022968827.1 (uncharacterized protein LOC111467946 [Cucurbita maxima])

HSP 1 Score: 193.4 bits (490), Expect = 9.5e-46
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60
          MAESKGKLESL+EWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL
Sbjct: 1  MAESKGKLESLKEWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPIDNYSHKD 99
          TLAALAGAAVVEYYEHKSG KAERYAKFLPIDNYSHKD
Sbjct: 61 TLAALAGAAVVEYYEHKSGEKAERYAKFLPIDNYSHKD 98

[Close]

BLAST of Lag0036288 vs. NCBI nr
Match: XP_004135606.1 (uncharacterized protein LOC101204590 [Cucumis sativus] >XP_008450622.1 PREDICTED: uncharacterized protein LOC103492155 [Cucumis melo] >KAA0050906.1 HIG_1_N domain-containing protein [Cucumis melo var. makuwa] >KGN66059.1 hypothetical protein Csa_007690 [Cucumis sativus] >TYK10257.1 HIG_1_N domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 191.8 bits (486), Expect = 2.8e-45
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60
          MAE KGKLESLR+WVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL
Sbjct: 1  MAEPKGKLESLRDWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPIDNYSHKD 99
          TLAALAGAAVVEYYEHKSGAKAERYAKFLPIDNYSHK+
Sbjct: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPIDNYSHKE 98

The following BLAST results are available for this feature:

BLAST of Lag0036288 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145879.1	1.1e-46	100.00	uncharacterized protein LOC111015231 [Momordica charantia]	[more]
XP_022961523.1	1.5e-46	98.98	uncharacterized protein LOC111462074 [Cucurbita moschata] >XP_023515964.1 unchar...	[more]
XP_022924720.1	9.5e-46	98.98	uncharacterized protein LOC111432132 [Cucurbita moschata] >XP_022970205.1 unchar...	[more]
XP_022968827.1	9.5e-46	97.96	uncharacterized protein LOC111467946 [Cucurbita maxima]	[more]
XP_004135606.1	2.8e-45	96.94	uncharacterized protein LOC101204590 [Cucumis sativus] >XP_008450622.1 PREDICTED...	[more]

BLAST of Lag0036288 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.140.1320		coord: 20..78 e-value: 1.5E-7 score: 33.1
None	No IPR available	PANTHER	PTHR28018:SF7	HYPOXIA-RESPONSIVE FAMILY PROTEIN-RELATED	coord: 4..98
IPR007667	Hypoxia induced protein, domain	PFAM	PF04588	HIG_1_N	coord: 17..67 e-value: 3.6E-10 score: 39.9
IPR007667	Hypoxia induced protein, domain	PROSITE	PS51503	HIG1	coord: 1..83 score: 21.037001
IPR040153	Respiratory supercomplex factor 2, mitochondrial	PANTHER	PTHR28018	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0036288.1	Lag0036288.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033617	mitochondrial cytochrome c oxidase assembly
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005746	mitochondrial respirasome