Lag0036279 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0036279
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr3: 43200197 .. 43200559 (-)
RNA-Seq ExpressionLag0036279
SyntenyLag0036279
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCTCGGGATCGACGTAAGCCGCAGATCAACCTACTGACAGTCAAGCAAGGACCAAAAGAAAGCTTGCAAGATTATATAGCAAGATTCAGTAACAAGGTTTTGCAGGTAGAAGGGTATGATGATGGACTTGCACTGACTGCTATCATTTTAGGTCTGCATGAAGAAAAGTTGCTCAGTTCAATCGGAGAGAGTCAACCGCACACCTATGTGGAATTCATGACTCAGGCACATAGATATATAAGCGCTGAGGAACTGTTGAAATCAAAGCAGACAGAGAGGGAAGTCCAAGGAATGTCTATTTTTTATCGAAAGAGGGAAGATAGAAGCAGGAGACGCCGAGCTAACGAAGGGAGCTAA

mRNA sequence

ATGGGAGCTCGGGATCGACGTAAGCCGCAGATCAACCTACTGACAGTCAAGCAAGGACCAAAAGAAAGCTTGCAAGATTATATAGCAAGATTCAGTAACAAGGTTTTGCAGGTAGAAGGGTATGATGATGGACTTGCACTGACTGCTATCATTTTAGGTCTGCATGAAGAAAAGTTGCTCAGTTCAATCGGAGAGAGTCAACCGCACACCTATGTGGAATTCATGACTCAGGCACATAGATATATAAGCGCTGAGGAACTGTTGAAATCAAAGCAGACAGAGAGGGAAGTCCAAGGAATGTCTATTTTTTATCGAAAGAGGGAAGATAGAAGCAGGAGACGCCGAGCTAACGAAGGGAGCTAA

Coding sequence (CDS)

ATGGGAGCTCGGGATCGACGTAAGCCGCAGATCAACCTACTGACAGTCAAGCAAGGACCAAAAGAAAGCTTGCAAGATTATATAGCAAGATTCAGTAACAAGGTTTTGCAGGTAGAAGGGTATGATGATGGACTTGCACTGACTGCTATCATTTTAGGTCTGCATGAAGAAAAGTTGCTCAGTTCAATCGGAGAGAGTCAACCGCACACCTATGTGGAATTCATGACTCAGGCACATAGATATATAAGCGCTGAGGAACTGTTGAAATCAAAGCAGACAGAGAGGGAAGTCCAAGGAATGTCTATTTTTTATCGAAAGAGGGAAGATAGAAGCAGGAGACGCCGAGCTAACGAAGGGAGCTAA

Protein sequence

MGARDRRKPQINLLTVKQGPKESLQDYIARFSNKVLQVEGYDDGLALTAIILGLHEEKLLSSIGESQPHTYVEFMTQAHRYISAEELLKSKQTEREVQGMSIFYRKREDRSRRRRANEGS
Homology
BLAST of Lag0036279 vs. NCBI nr
Match: XP_024041095.1 (uncharacterized protein LOC112098853 [Citrus clementina])

HSP 1 Score: 89.4 bits (220), Expect = 2.4e-14
Identity = 50/113 (44.25%), Postives = 73/113 (64.60%), Query Frame = 0

Query: 3   ARDRRKPQINLLTVKQGPKESLQDYIARFSNKVLQVEGYDDGLALTAIILGLHEEKLLSS 62
           AR R KP   LLTVKQ   E+L+DYI R++N++ QV+GYDDG+AL+ I+ GL   KL  S
Sbjct: 266 ARQRGKPVTYLLTVKQQEGETLRDYIRRYNNEITQVDGYDDGIALSGIMEGLRMGKLWWS 325

Query: 63  IGESQPHTYVEFMTQAHRYISAEELLKSKQTEREVQGMSIFYRKREDRSRRRR 116
           + +  P +Y E + +A +Y +AEE  K++  E+   G S   +K++D  R RR
Sbjct: 326 VSKRPPTSYSEMLARAEKYANAEERFKNRNQEK---GESTKGKKKKDDQRERR 375

BLAST of Lag0036279 vs. NCBI nr
Match: XP_022158344.1 (uncharacterized protein LOC111024851 [Momordica charantia])

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-12
Identity = 49/115 (42.61%), Postives = 74/115 (64.35%), Query Frame = 0

Query: 1   MGARDRRKPQINLLTVKQGPKESLQDYIARFSNKVLQVEGYDDGLALTAIILGLHEEKLL 60
           +G R + KP   LLT+KQ   ESL++Y+ARF+ + LQVEG  D +AL A + G+ +E+L+
Sbjct: 83  VGGRVKSKPVTYLLTIKQKATESLKEYVARFNEEKLQVEGLTDAVALIAFVSGVKDERLV 142

Query: 61  SSIGESQPHTYVEFMTQAHRYISAEELLK-SKQTEREVQGMSIFYRKREDRSRRR 115
            S G+  P T++E +++A +Y+SA EL+  S+  ERE    S    KRE R  +R
Sbjct: 143 FSFGKRTPGTFMEALSRAQKYMSAGELIHLSRDLERERANYS---TKRERRGEKR 194

BLAST of Lag0036279 vs. NCBI nr
Match: XP_015386823.1 (uncharacterized protein LOC107177480 [Citrus sinensis] >XP_024038300.1 uncharacterized protein LOC112097346 [Citrus clementina])

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-12
Identity = 40/93 (43.01%), Postives = 63/93 (67.74%), Query Frame = 0

Query: 3   ARDRRKPQINLLTVKQGPKESLQDYIARFSNKVLQVEGYDDGLALTAIILGLHEEKLLSS 62
           A+ RRKP   LLTVKQ   E+L+DYI +++N+++QV+GYDDG++L  I+ GL   KL  S
Sbjct: 115 AQQRRKPVTYLLTVKQQEWETLRDYIRKYNNEIIQVDGYDDGISLFGIMEGLKMGKLWWS 174

Query: 63  IGESQPHTYVEFMTQAHRYISAEELLKSKQTER 96
           + +  P +Y E + +  +Y +AEE  K++  E+
Sbjct: 175 VSKRPPTSYSEMLARVEKYANAEERFKNRNQEK 207

BLAST of Lag0036279 vs. NCBI nr
Match: XP_024047974.1 (uncharacterized protein LOC112101548 [Citrus clementina] >XP_024953918.1 uncharacterized protein LOC112498174 [Citrus sinensis])

HSP 1 Score: 81.6 bits (200), Expect = 4.9e-12
Identity = 47/108 (43.52%), Postives = 70/108 (64.81%), Query Frame = 0

Query: 3   ARDRRKPQINLLTVKQGPKESLQDYIARFSNKVLQVEGYDDGLALTAIILGLHEEKLLSS 62
           AR R KP   LLTVKQ   ESL++YI R++ +  QV+GYDDG+AL+ ++ GL   +L  S
Sbjct: 108 ARQRGKPVTYLLTVKQHEGESLREYIQRYNAETTQVDGYDDGVALSGLMEGLQMGRLWWS 167

Query: 63  IGESQPHTYVEFMTQAHRYISAEELLKSKQTEREVQGMSIFYRKREDR 111
           + ++ P TY E +++A +Y +AEE  +SK+  RE    S   + +EDR
Sbjct: 168 VAKNPPSTYSEMLSRAEKYANAEERFQSKK-GREKGESSKNKKTKEDR 214

BLAST of Lag0036279 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-11
Identity = 49/118 (41.53%), Postives = 70/118 (59.32%), Query Frame = 0

Query: 1   MGARDRRKPQINLLTVKQGPKESLQDYIARFSNKVLQVEGYDDGLALTAIILGLHEEKLL 60
           +G R R +P   LLT+KQ   ESL+DY+ARF+ + LQVEG  D ++L A + G+ +E L 
Sbjct: 267 VGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLS 326

Query: 61  SSIGESQPHTYVEFMTQAHRYISAEELLKSKQTEREVQGMSIFYRKREDRSRRRRANE 119
            S G+  P+T+ E +++A RY+SA E   SK   RE  G      KR D  R R  ++
Sbjct: 327 FSFGKRTPNTFSEALSRAQRYMSAGEFFYSK---REPDG------KRTDPKRERSGDK 375

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_024041095.12.4e-1444.25uncharacterized protein LOC112098853 [Citrus clementina][more]
XP_022158344.11.3e-1242.61uncharacterized protein LOC111024851 [Momordica charantia][more]
XP_015386823.11.3e-1243.01uncharacterized protein LOC107177480 [Citrus sinensis] >XP_024038300.1 uncharact... [more]
XP_024047974.14.9e-1243.52uncharacterized protein LOC112101548 [Citrus clementina] >XP_024953918.1 unchara... [more]
XP_022158830.12.4e-1141.53uncharacterized protein LOC111025293 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0036279.1Lag0036279.1mRNA