Lag0036259 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0036259
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	40S ribosomal protein S12
Location	chr3: 42718574 .. 42720121 (-)
RNA-Seq Expression	Lag0036259
Synteny	Lag0036259

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCACATGATTTGCAATCTCAGAGAACATAAACATTTCAAAACTGCACAAAGTTTGCTTGAAAAGATTGCAAATAAGGTTTTCATATCCTCTCCATCGGTTTTAAAGATTGCATTCTCACAGGATTTCATTCAAGTTCTAGAATGTATGAGGCTTCATGGGTTTAAGCCTCATTTGCATGCTTGTATTGTGTTATTAAGTTCCTTTATGAAGATTTTTGTGCCTTTTGAATTAATTGCTCCACAAAATATAGGTGACTTTGATATTGTCATACACAATATTATGTCCATTTTCTTTATATCTTCTCTTGGACACTTTTGTGTTTGGTTTATTATAATGAATTTTAGAAGGTTGGATTTGTTTAGTTCATTGTTTGGTTTGTGAGTTTATGATTCACTTGTTATGAGATCTGACTCGTATTATATCTAATTGAGCTTATGATTTACTCGCATTTTCTTGCATTTTATTATATCTAAATATGGAAGGGAGCTTTTTGAATATTGAAATGGAACTTCGTTATTATATTCTAGAATGTTCTCTAAACTTTGGGATTGACTTCTCTTATTTGACTCACCACTTTTAATTTATTAAACTTTTAAGGATTTCATCCATATGGATATATTTGCATACTCACACCAAGCAAATAATTGTATTGATGAATCCTAAATACAACCCGTGTCTCGAGGTAAACTATAGATCTATAAATCTATATCTTAAATTCAACCCGTGTCTCGATGGACTCACATCGGGACAACACCCAAAATTAGGTATGCCCTCAGTTTAAGTTTTGCAATTATCTTAAGTGTTGTATGATTTAATCAGTATGTAGATAGTTGTTAATACGAGACCTGACTCGTATGGTGATTGTTGTGAGAGTTCTGTTGAATTGAAGTATGGGGGAGTTGACTGAAATATTATAGGAGTGTTATTTTTATGTTTGTAGGTGTTTAAAAAATTTTGGGTTAGCCATATGTATGCCGTTTTGCTGCCGAAATTTCTGGATAGTTGTTAATACTTAGTTACCATGTTTTACATGTTCTGGATCACACATATATATAATCTCTTCATGCATAAACAAGCAAAATATTTCTTTTTCCCTCCTAACATGTCTTGTTAAAATATTTGAATTCTACACCATCTGTTTGAGTTTGATTTCAAGATTCAACTTATCGAAAGTTTTAATTGATATGAGTTTGGATAATAAGTCATTTTCTTCATATTTGGTCTAATGCAGCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTGTTGGGTGCTCTTGTGTTGTAGTTAAGGTATGTCGTGTGTTTAAAGTGTACTTTGAAGCATATTTTTTTCGTGGTGTTATTTGCATTAGAGGTTTATGTAAAGACTTTCTGTTTGGAATTAGACTTACAAGAGCTTGATTTTGACATTTTTTTCGTGGTGTTATTTGACTTACCAGATTTTTGTTGGTGGTGGAGATGCTGCTGTAGAAGCCCCAATTGAGAAGAAGGAAGAGAATGATGTCGAAGACCTTGGCCTTTCACTTTTTGATTAG

mRNA sequence

ATGCTCCACATGATTTGCAATCTCAGAGAACATAAACATTTCAAAACTGCACAAAGTTTGCTTGAAAAGATTGCAAATAAGCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTGTTGGGTGCTCTTGTGTTGTAGTTAAGATTTTTGTTGGTGGTGGAGATGCTGCTGTAGAAGCCCCAATTGAGAAGAAGGAAGAGAATGATGTCGAAGACCTTGGCCTTTCACTTTTTGATTAG

Coding sequence (CDS)

ATGCTCCACATGATTTGCAATCTCAGAGAACATAAACATTTCAAAACTGCACAAAGTTTGCTTGAAAAGATTGCAAATAAGCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTGTTGGGTGCTCTTGTGTTGTAGTTAAGATTTTTGTTGGTGGTGGAGATGCTGCTGTAGAAGCCCCAATTGAGAAGAAGGAAGAGAATGATGTCGAAGACCTTGGCCTTTCACTTTTTGATTAG

Protein sequence

MLHMICNLREHKHFKTAQSLLEKIANKLCKIDSEGKARKVVGCSCVVVKIFVGGGDAAVEAPIEKKEENDVEDLGLSLFD

Homology

[Close]

BLAST of Lag0036259 vs. ExPASy Swiss-Prot
Match: Q9S9P1 (40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.5e-04
Identity = 21/24 (87.50%), Postives = 22/24 (91.67%), Query Frame = 0


Query: 28  LCKIDSEGKARKVVGCSCVVVKIF 52
           LCKIDSEG ARKVVGCSC+VVK F
Sbjct: 104 LCKIDSEGNARKVVGCSCLVVKDF 127

[Close]

BLAST of Lag0036259 vs. ExPASy Swiss-Prot
Match: Q9XHS0 (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.5e-04
Identity = 20/22 (90.91%), Postives = 22/22 (100.00%), Query Frame = 0


Query: 28  LCKIDSEGKARKVVGCSCVVVK 50
           LCKID+EGKARKVVGCSC+VVK
Sbjct: 103 LCKIDTEGKARKVVGCSCIVVK 124

[Close]

BLAST of Lag0036259 vs. ExPASy Swiss-Prot
Match: Q9SKZ3 (40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-04
Identity = 24/39 (61.54%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 28  LCKIDSEGKARKVVGCSCVVVKIFVGGGDAAVEAPIEKK 67
           LCKIDSEG ARKVVGCSC+V+K F   G+      I KK
Sbjct: 104 LCKIDSEGNARKVVGCSCLVIKDF---GEETTALNIVKK 139

[Close]

BLAST of Lag0036259 vs. ExPASy Swiss-Prot
Match: Q76I81 (40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 7.6e-04
Identity = 20/22 (90.91%), Postives = 20/22 (90.91%), Query Frame = 0


Query: 28  LCKIDSEGKARKVVGCSCVVVK 50
           LCKID EGK RKVVGCSCVVVK
Sbjct: 91  LCKIDREGKPRKVVGCSCVVVK 112

[Close]

BLAST of Lag0036259 vs. ExPASy Swiss-Prot
Match: P84175 (40S ribosomal protein S12 OS=Gallus gallus OX=9031 GN=RPS12 PE=1 SV=2)

HSP 1 Score: 44.3 bits (103), Expect = 7.6e-04
Identity = 20/22 (90.91%), Postives = 20/22 (90.91%), Query Frame = 0


Query: 28  LCKIDSEGKARKVVGCSCVVVK 50
           LCKID EGK RKVVGCSCVVVK
Sbjct: 91  LCKIDREGKPRKVVGCSCVVVK 112

The following BLAST results are available for this feature:

BLAST of Lag0036259 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0036259 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S9P1	1.5e-04	87.50	40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1	[more]
Q9XHS0	1.5e-04	90.91	40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1	[more]
Q9SKZ3	2.0e-04	61.54	40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1	[more]
Q76I81	7.6e-04	90.91	40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1	[more]
P84175	7.6e-04	90.91	40S ribosomal protein S12 OS=Gallus gallus OX=9031 GN=RPS12 PE=1 SV=2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 5..70 e-value: 2.7E-7 score: 31.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0036259.1	Lag0036259.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome