Lag0036069 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0036069
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	CCHC-type domain-containing protein
Location	chr3: 38407359 .. 38407700 (-)
RNA-Seq Expression	Lag0036069
Synteny	Lag0036069

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTTTGAAAAGCTACCAGACTTCTGTTACGAATGTGGAAGAATAGGACACATCACGAAAGATTGTGAAGAAAAAGAAACAGAAAAAGGAGAAGAACAACGATATGGAAATTGGCTAAAGAAGTATCCGGCGGCTAGAGGAAACTACAAAAGCAAAAAGAACCAAGGACACGAAGAACCAAGTAACAACAATGAAAGAGCTCGAAGAGATCAAAGAATTGGGTCAGGAAGTCAAGAAAATTTAGGAAGAAATACCCAAAGAGAAGAAGAAAAACAGCAAACAAACCGGCGGCAAGGGGAATCGCCGAAAAATTCAGAAACCACCGGAGAAGACAAATAG

mRNA sequence

ATGAGGTTTGAAAAGCTACCAGACTTCTGTTACGAATGTGGAAGAATAGGACACATCACGAAAGATTGTGAAGAAAAAGAAACAGAAAAAGGAGAAGAACAACGATATGGAAATTGGCTAAAGAAGTATCCGGCGGCTAGAGGAAACTACAAAAGCAAAAAGAACCAAGGACACGAAGAACCAAGTAACAACAATGAAAGAGCTCGAAGAGATCAAAGAATTGGGTCAGGAAGTCAAGAAAATTTAGGAAGAAATACCCAAAGAGAAGAAGAAAAACAGCAAACAAACCGGCGGCAAGGGGAATCGCCGAAAAATTCAGAAACCACCGGAGAAGACAAATAG

Coding sequence (CDS)

ATGAGGTTTGAAAAGCTACCAGACTTCTGTTACGAATGTGGAAGAATAGGACACATCACGAAAGATTGTGAAGAAAAAGAAACAGAAAAAGGAGAAGAACAACGATATGGAAATTGGCTAAAGAAGTATCCGGCGGCTAGAGGAAACTACAAAAGCAAAAAGAACCAAGGACACGAAGAACCAAGTAACAACAATGAAAGAGCTCGAAGAGATCAAAGAATTGGGTCAGGAAGTCAAGAAAATTTAGGAAGAAATACCCAAAGAGAAGAAGAAAAACAGCAAACAAACCGGCGGCAAGGGGAATCGCCGAAAAATTCAGAAACCACCGGAGAAGACAAATAG

Protein sequence

MRFEKLPDFCYECGRIGHITKDCEEKETEKGEEQRYGNWLKKYPAARGNYKSKKNQGHEEPSNNNERARRDQRIGSGSQENLGRNTQREEEKQQTNRRQGESPKNSETTGEDK

Homology

[Close]

BLAST of Lag0036069 vs. NCBI nr
Match: GAU39028.1 (hypothetical protein TSUD_59840 [Trifolium subterraneum])

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-05
Identity = 30/71 (42.25%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 2   RFEKLPDFCYECGRIGHITKDCEEKETEKGE--------EQRYGNWLKKYPAARGNYKSK 61
           ++E+LP FC+ CGRIGH  ++CEE E + GE        E  +G WL+  P  R NY +K
Sbjct: 192 KYERLPIFCFVCGRIGHQIRECEETEAQDGEGFEEIEEKELPFGPWLRASPLPRANYVAK 251

Query: 62  KNQGHEEPSNN 65
           K  G    S N
Sbjct: 252 KESGSSSCSKN 262

[Close]

BLAST of Lag0036069 vs. NCBI nr
Match: KAA0046998.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK04784.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-05
Identity = 23/54 (42.59%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 3   FEKLPDFCYECGRIGHITKDCEEKETEKGEEQRYGNWLKKYPAARGNYKSKKNQ 57
           +EKLPDFCY+CGR+GH+ ++C+E   +  E QR+G WL+K   ++   K ++ +
Sbjct: 59  YEKLPDFCYKCGRVGHVVQECKEVGDDGEEGQRFGVWLRKSQTSQSISKGRREE 112

[Close]

BLAST of Lag0036069 vs. NCBI nr
Match: TXG49744.1 (hypothetical protein EZV62_025619 [Acer yangbiense])

HSP 1 Score: 58.9 bits (141), Expect = 3.2e-05
Identity = 25/55 (45.45%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 1   MRFEKLPDFCYECGRIGHITKDCEEKETEK----GEEQRYGNWLKKYPAARGNYK 52
           +++E+LPDFCY CGRIGH  K+C ++E  K    G   ++G+WLK   + + NYK
Sbjct: 177 LKYERLPDFCYVCGRIGHGIKECIDEEARKASLEGLPNKFGSWLKASTSEQSNYK 231

[Close]

BLAST of Lag0036069 vs. NCBI nr
Match: XP_010684980.1 (PREDICTED: uncharacterized protein LOC104899481 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 58.2 bits (139), Expect = 5.5e-05
Identity = 21/44 (47.73%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 1   MRFEKLPDFCYECGRIGHITKDCEEKETEKGEEQRYGNWLKKYP 45
           +++E+ P FC+ CG++GH+TKDCEE++ E+    +YG WLK  P
Sbjct: 220 VKYERPPLFCFYCGKVGHVTKDCEEEDMEEEGVVKYGGWLKASP 263

[Close]

BLAST of Lag0036069 vs. NCBI nr
Match: XP_038716189.1 (uncharacterized protein At4g02000-like [Tripterygium wilfordii])

HSP 1 Score: 58.2 bits (139), Expect = 5.5e-05
Identity = 21/44 (47.73%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 1   MRFEKLPDFCYECGRIGHITKDCEEKETEKGEEQRYGNWLKKYP 45
           +++E+LP+FCY CG++GH+  DCE  ET+  E + YG+WL+  P
Sbjct: 200 VQYERLPNFCYMCGKLGHVDHDCEVGETDFPEPKPYGDWLRSSP 243

The following BLAST results are available for this feature:

BLAST of Lag0036069 vs. NCBI nr


Match Name	E-value	Identity	Description
GAU39028.1	1.9e-05	42.25	hypothetical protein TSUD_59840 [Trifolium subterraneum]	[more]
KAA0046998.1	2.5e-05	42.59	reverse transcriptase [Cucumis melo var. makuwa] >TYK04784.1 reverse transcripta...	[more]
TXG49744.1	3.2e-05	45.45	hypothetical protein EZV62_025619 [Acer yangbiense]	[more]
XP_010684980.1	5.5e-05	47.73	PREDICTED: uncharacterized protein LOC104899481 [Beta vulgaris subsp. vulgaris]	[more]
XP_038716189.1	5.5e-05	47.73	uncharacterized protein At4g02000-like [Tripterygium wilfordii]	[more]

BLAST of Lag0036069 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 2..24 e-value: 1.4E-6 score: 27.9
None	No IPR available	GENE3D	4.10.60.10		coord: 4..38 e-value: 2.2E-5 score: 26.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..74
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 10..25 score: 10.526307
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 7..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0036069.1	Lag0036069.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding