Lag0035739 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0035739
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr3: 29226636 .. 29227193 (+)
RNA-Seq Expression	Lag0035739
Synteny	Lag0035739

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAACCACCCACGACAACACGATTTCAGTGGATAGAGTGATGCTACTCTATTGCCTTATGAAAGGGTTAGAGATCAACATAGGGAGCATAATTAGGGATGAGATTTTAGCCTGTGGGAGAAAGTGAGCAGGCAAGCTTTTCTTTGGATCACTCATCACCAAGCTCTACCAAAGGGTGAAGATCGTTTCGGACAAGGACGAGAAGTGTCACTTCTTCAAGCCGACCATTGACCTGTCCTTGATCAGGAAGCTCCAGCAGAACAACATCCAGAGGAAAGACAAAGGCTCTACATCTCAGGCTACTCCTCAATCAGGGCCGAATGTAGCTTCTCCATCCCAGCACACTCCTTTCACAGGGCCTTCACCATCGTCGGAAGCCCTAGCTATTGCCTACCGCCAGCTAGATCAAATCAGGGAGAACCTGAAGACTTATTGGGCGTATGCAAAGGAGTGGGATGAAGCCATTAGAGAGTTTTACCTCTCTATCGCCCCAAGCGTTGCTCCGGTCTTTCCCAATTTCCCTCATCGCTGCTGCCTCAAGAAGAAAGGATTCTGA

mRNA sequence

ATGCCAACCACCCACGACAACACGATTTCAGTGGATAGAGTGATGCTACTCTATTGCCTTATGAAAGGGTTAGAGATCAACATAGGGAGCATAATTAGGGATGAGATTTTAGCCTGTGGGAGAAAGAAGCTCCAGCAGAACAACATCCAGAGGAAAGACAAAGGCTCTACATCTCAGGCTACTCCTCAATCAGGGCCGAATGTAGCTTCTCCATCCCAGCACACTCCTTTCACAGGGCCTTCACCATCGTCGGAAGCCCTAGCTATTGCCTACCGCCAGCTAGATCAAATCAGGGAGAACCTGAAGACTTATTGGGCGTATGCAAAGGAGTGGGATGAAGCCATTAGAGAGTTTTACCTCTCTATCGCCCCAAGCGTTGCTCCGGTCTTTCCCAATTTCCCTCATCGCTGCTGCCTCAAGAAGAAAGGATTCTGA

Coding sequence (CDS)

ATGCCAACCACCCACGACAACACGATTTCAGTGGATAGAGTGATGCTACTCTATTGCCTTATGAAAGGGTTAGAGATCAACATAGGGAGCATAATTAGGGATGAGATTTTAGCCTGTGGGAGAAAGAAGCTCCAGCAGAACAACATCCAGAGGAAAGACAAAGGCTCTACATCTCAGGCTACTCCTCAATCAGGGCCGAATGTAGCTTCTCCATCCCAGCACACTCCTTTCACAGGGCCTTCACCATCGTCGGAAGCCCTAGCTATTGCCTACCGCCAGCTAGATCAAATCAGGGAGAACCTGAAGACTTATTGGGCGTATGCAAAGGAGTGGGATGAAGCCATTAGAGAGTTTTACCTCTCTATCGCCCCAAGCGTTGCTCCGGTCTTTCCCAATTTCCCTCATCGCTGCTGCCTCAAGAAGAAAGGATTCTGA

Protein sequence

MPTTHDNTISVDRVMLLYCLMKGLEINIGSIIRDEILACGRKKLQQNNIQRKDKGSTSQATPQSGPNVASPSQHTPFTGPSPSSEALAIAYRQLDQIRENLKTYWAYAKEWDEAIREFYLSIAPSVAPVFPNFPHRCCLKKKGF

Homology

[Close]

BLAST of Lag0035739 vs. NCBI nr
Match: KAF4375842.1 (hypothetical protein G4B88_026421 [Cannabis sativa])

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-05
Identity = 41/132 (31.06%), Postives = 63/132 (47.73%), Query Frame = 0


Query: 1    MPTTHDNTISVDRVMLLYCLMKGLEINIGSIIRDEILACGRK-------------KLQQN 60
            +PT+HD+T+S +R+ +LYC++KG +IN+G +I  EI  C  +             K +  
Sbjct: 886  LPTSHDSTVSRERMWMLYCIVKGKKINVGKVIAKEIFECAHRVKGKLFFSCLITEKCRCA 945

Query: 61   NIQRKD-------KGSTSQATPQSGPNVASPSQHTPFTGPSPSSEALAIAYRQLDQIREN 113
            N+   +       KG  S   P   P   +PS  T  T   P  E L+       Q+ E 
Sbjct: 946  NVPMLNDEDPVPRKGVVS-FEPDRAPKRTTPSTTTASTSRDPMDERLSKHEALQQQMCER 1005

[Close]

BLAST of Lag0035739 vs. NCBI nr
Match: MCI09484.1 (hypothetical protein [Trifolium medium])

HSP 1 Score: 55.8 bits (133), Expect = 3.5e-04
Identity = 38/140 (27.14%), Postives = 64/140 (45.71%), Query Frame = 0


Query: 1   MPTTHDNTISVDRVMLLYCLMKGLEINIGSIIRDEILACGRKK---------------LQ 60
           MPTTH+ T++  R++LL+C++ G +IN+G II  EI+ C  KK                +
Sbjct: 40  MPTTHNETVNKARLVLLHCIIAGQKINVGRIIHQEIVNCSAKKSNEGMLYFPCLITELCK 99

Query: 61  QNNIQRKDKGSTSQATPQ----------SGPNVASPSQHTPFTGPSPSSEALAIAYRQLD 116
           +N +    +    Q T             G     P Q  P    S ++ + A+   +  
Sbjct: 100 KNLVHVSGRDEVFQPTNSFDQKAIETLLKGNTGRKPRQQLPEATTSAAAVSQAVDAEEFM 159

The following BLAST results are available for this feature:

BLAST of Lag0035739 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4375842.1	3.1e-05	31.06	hypothetical protein G4B88_026421 [Cannabis sativa]	[more]
MCI09484.1	3.5e-04	27.14	hypothetical protein [Trifolium medium]	[more]

BLAST of Lag0035739 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0035739.1	Lag0035739.1	mRNA