Lag0035734 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0035734
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionIntegrase catalytic domain-containing protein
Locationchr3: 29117526 .. 29122747 (+)
RNA-Seq ExpressionLag0035734
SyntenyLag0035734
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACGTAGTCTTACAAGATGGAATTCACTCCTTCCTGATATGAGGGTAAGTAGAGGTGTGTTCCCTTAAGTGGTGTCTCCGGGTCTTGAACAATGGGCCCTACCCTCTTTATGGCACGAGAGGGATTTCTGTTTGATGGTTGGACCACAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGACCAAGAGGTAGCCCAGGGGTAAAACGGTAATTTGACCTAGCTGGGGTACGAACACACGTGAAGGGCTAACTTGCTGTTGACGGTCAATATCCGTGGACACAGAAATATATCTGCAGTGAGAAGAGTGCAGCTGTGGTTCTTTAATGGAGTGAACCACAGTTAACGAATATTGATTAACTTGGTTAATGAGTTTAACCAACTAATCTCATATCGTTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCCACCGGTAGCTCATTTAGGGCGTTGAGGTAAAATTCTAAGGATGGATTGAATATTCGAAGGTGTTCGAACATTATACTGAAATATGAATTTGGTTCATATTAAAACTATAGGTTATAATTAATATGCATTGGATGTATATTAATACTATAGTTTTGAGAGAGAAAATAGTAATTGAATATGTGATGTTCAATTTTATTTAATTTTTATTAATTAATTTCGAATTAATTAATTAATTTAGTTTAATTAAATTTGATTTAATTAAACTATAAGATAAGAGGGATATTAATTTAAATTGGATTTAAATTAATGTTATTTTAATTAATTTAGATTAATTAAAATACAATTAATTGTAATTTAAAATTATGATTTTAAAATTATAATTAATTAAAAATATCAGGTAACTGATATTTTCAGTTACCTGATATCATGTGGTCAGTGTGTAGTTAGAGATTTACGCTCAGTCTCACGTCTCTAACGCCTATCTCTCCCTCTCTCTTGTTCTCTCTCGTTCTGCACTCTCTCAGAGAAGACAGAGTTCTTGATCCAGAAAATTTCCTTAAGGTTTTTGAGTTCCCACAAGCTCTCAACGTGTATCCCTTTGAGAATACTGGTGAAACCTCCTGGTGGTGTTCGTGGCATTTTTTCCAGCAAGATCAAGGTGTGACTGCTGCTGTTTTTTTGGGAGAAAATCAAAGAATTTTGGCGAAAAGTTCAAGGATTTCTTCAAGGGTAAGGTTTTTCTTGAACTAGGGTCATTAGGACAAAATTCTAGATTAGATCTATAATTTTTCTCTTGATTTAGAATGCTTATATCTGTTTACAGCATTTAGTTAGTCTATAATGTTCGCTGTAAAAATTTATATTATTTTTGTCGTCGTATTGGTATCTCAATCGGCGTTTTATTCGGAAAGGTCTTTGTTGTTTTCCGCTGCAAAAGGGCTATTATCCCTACACTTTGGACGACATATGGTCCAAACTTTACTCTGTTTAAGTTTTTGAGAGCTCAGAACCCAATGCTCTTCCCAATGAGAGTCTTTCATGTAGTTTGGACGAAGTTGGTCCTAACTTTGCTCCGTTGAATTTCGAGAGAGTTTGGTACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAGTTTTTGAAAACTATTTTGTTTAGGGCTCGTTTGATAACTATTTTGTTTTTTTGTTTTTGGTTTTTAAAAATTTAGCCTATAAACACTATTTTCACTAATAAGTTTCTTTGTTTTCTTCTCTACCTTCTTCCCATGTTTTCAAAAACCAACTCAAGTTTTGAAAACTAAAAAAAGTAGTTTCCAAAAACTTGTTTTTGTTTTTGGAATTTGGTTAGGAATTCAAATATGCCCTTGACAAAAATGAAAACAATGGTAAGAAATTTGAGAGGAAACAAGCTTAATTTTCAAAAACAAAAAACAAAAACCAAATGGTTATCAAACGGGGCCTTAGTTTTCAAAAATTGGCTTGGTTTTTGAAAAAAGGAGGCATATAACCGAACAAAGAAACTTATAAATAGAAGTAGTATTTATAAGCTTTTCAAAAACCAAGTGGTTATCAAATGTTTTTTTTTTTTTTTTTTTTGAGTTCAACATCATTTGGGATGGGGAATCCAAACCTCTAATTTACCATTAGAGTTGTATGCTCGTTTTTCCTTAATTAGCAAACTTTTTAAACTTATATATAAATAAAAAAATTATTATTTTAAAAATAAAATCAATTTATTTCGTGTAAAGTAGTAAAAATTAAATTTCCTACTTTATTTAACTAAAATGTATTCCTTATTATATAATTACTGATGTTTAATTAATTTCTATGCGTAAACTATCTTAAATTTAAAAAATAATCAATGATTTCTTCTAACAAAAATTAGTTTGTTTTCCTATGGATAAAAATTTTAATCTATTTTAATTTTTAAAATTGAAGAATGAAATGTTAATTTAAGCATAATTCAATCGATCAAAGCATTAATAACATTCTTCTTTTCGAGATTAGATGTTCGAATCTCTACCTCGCTTGAATTGTAAAACTTAGAAACCTGAGAATGTAATAGCAAAAAGAGTTTCATACTTTTATTTTTTTTTAGAAAAGTCTACAGTATTTAAAAGAATTAAAAAGAGAAAAAAGTAAAAGTTTCAACTGAAAAGGACATTGGATTGTAGACCCTTCCCTCATATCACCCTTTCATTTTAAGAAGAGAATGAGACTTTGAATTAATGATTGTGAGGTTTTCTTTTTTCTTTTGCCTAATTGAAAGAGTTGGCTTTTGAATAATGGTTGGGAAAGGGCTTACTCGTGTTTTCAAACTTTCTCATAATTCATACCTCATTATGATAAAGATGTAAGGAAGTCTTCCTTTTTCAAGAATTGATTGAGAGGACTTTATTGATAAGGTTGAAACTACTTACTCACCCAAATTTACATAAATGGAGCTTTGCAAAGAAAATGGGGGCGAAAAAGATTTTCTTTTCGATTCAACATTATGTAGGATTTGAGCCTCAAACAGCTTTTTGGTTTTGAAGTTATAATGTCTTAATTATTTGAGCGTTGTTTAGGTTGACGTGTCGAAAAATATATATGCTACCATATATCTTAATCTCTCTTATATACACCTCGGTTAATTTCATAAAACTATGATTTTATAATCTTTAGTAGTAAAAAAAACTAATAGGATTTTAATATTTAAGAAAGTGGTCATAATGGAGTTTGACCCATAAAAGATAGGGGAGTTAGGGGATCATTTAGGAGCTATTTAAAAGAAATATATAAAATCACGTATTTGGTAGGATCATTTTCAAAAAAAAAAAAAAAAGAATTACAAAATTTGAAACATGTTATAAAATATGAAAGACAATAAGAACACTAAGAGAGAATTGTGAGAGCAAAGGTAGGGAGAAAATAGAGCAAATGATTCTCATTCAAGTTTTATGTTTTCAACCCTTCATATACCTCCCTATTTATACTAATACAATAGGGATGGTTACAACCTTAAAAGACCTAAAATAGGAGAGAGAGAGTCTTATGCCTATTGTTAAGGAGAGTCATGGGGAGAACCCTAAAATGGTGGGGTTGAATAATGGTTAAATATGGATATCTATTAATACATATACATTGTATTTCTAACACTCCCTCTTAGATATCTATTGTATATGAAATATATGTCTCATTAAAATCTTACTAGGAAAAACCCAATGGGAAAAACCCTAGTGAAGGAAAGAGAGTACATTATATTTATATACATTAACAACTGCCTCATTAAAAACCTTGCTACGAAAACCCAGTGGAAAAAACCATAGAGAAGGAAAAAAGTGTGCAATATATTTTCTCTCCCTCATGAAAACATCATTTGAGATCTCTAAGTCGTTGTATTTCAATGTTGTGCACCAACTTCTCAAAAGTTGCAGTAGGTAATGTCTTCGTAAATTAGTCTCCCAAGTTATCTTTGGAAGAAATTTTTTGAATAGTGATATCACTGTTTTCTTCAAAATCGTGAGTATAGAAGAGCTTTGGTGAGATATGCTTCATTCTATCTCCTTTAATGTATCCTCCTTTAATTTGGGCTATACATGTATTTTCTTCATGTAACGTTATTGGACAATCTTTGTTAGAGGACAATCCACATGTTTCACAAATGTGTTGAGTCATTGATCTTAGCCATACACATTCTCGACTAGCCTCATGAATCGTCAGGATCTCAACATGGTTTGAGGAAGTAGCTGTTATTGTCTGCTTCATAGATCGCCATGATATAGCAGTTCCTCCATATGTAAATAAATAACCTGTTTGAGATCTATATTTTTGTGAGTCAGATAAATAATCTGCATCTGCATAACCAACTAGATCAAAGTTTGATTTATTAGAATAAAATAAACCCATATCAATTGTCCCTTGAAGATAACGGAGGATATGCTTAACTTCATTCCAATGCATTTTTGTTGGAGAAGAACTATATCTAGCTAATAAATTTACTGAAAATGTTATATCAGGTTGTGTATCATTAACAAGATACATATGTTGAGTTTTATGCCATAAAACTCGTAGATAGTGAATATAAACAAATTGCATACTTGTTTCAATAAAGTGTTATTGATAGCGCAATTTATTGAGATATATTTTATATTATTTTAGCGTTAGTCTTGGGTACTATTTGGTCAATTTTATGTCTATTTGGTTTTGTTTCGTAGGAATCAAGCATTTCAATGGAAATTGATGTTTTTGAAGAATACCGTTAATTATGGACGAAAAGAATTAACCCAAGAAAAGGAATTTACAAATGAAGACAAGGTCAAGGTTTGCATCCAATAGGGCAGCGTCGAGACGCCCCATAGATAGCGTCTCAACGCTGGCCCCTTCAGCAGGAGGCGCGAATTCGAGGCAGCGTCGAGACGTTACTTCCACAGCGTCTCGACGCTGCAAACTTTCCTGAAATAATTAGGGCATGCGCGCGACAGTGTCGCGACGCTGTCGCGCAGAATGAACAGTATATATATTTTGCGATGCCATCTGATTGGGGGAGCTGTTTTGGAGAGAGAAAGACGATTTTTAGAGAGGGAAAACACACAGAACATGGAAGAAACAAAGAGGGCTTGATTTTGGGAGCTTGGATCGTGAGGACCGTGACGAGAACGCTCGAGAATCACGGCTAG

mRNA sequence

ATGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACGTAGTCTTACAAGATGGAATTCACTCCTTCCTGATATGAGGGTAAGTAGAGGTCCATTAGGTCCCACCGGTAGCTCATTTAGGGCGTTGAGAGAAGACAGAGTTCTTGATCCAGAAAATTTCCTTAAGGTTTTTGAGTTCCCACAAGCTCTCAACGTGTATCCCTTTGAGAATACTGGTGAAACCTCCTGGTGGTGTTCGTGGCATTTTTTCCAGCAAGATCAAGGTGTGACTGCTGCTGTTTTTTTGGGAGAAAATCAAAGAATTTTGGCGAAAAGTTCAAGGATTTCTTCAAGGGTAAGGATCTCAACATGGTTTGAGGAAGTAGCTGTTATTGTCTGCTTCATAGATCGCCATGATATAGCAGTTCCTCCATATGAGGCGCGAATTCGAGGCAGCGTCGAGACGTTACTTCCACAGCGTCTCGACGCTGCAAACTTTCCTGAAATAATTAGGGCATGCGCGCGACAGTGTCGCGACGCTGTCGCGCAGAATGAACAGTATATATATTTTGCGATGCCATCTGATTGGGGGAGCTGTTTTGGAGAGAGAAAGACGATTTTTAGAGAGGGAAAACACACAGAACATGGAAGAAACAAAGAGGGCTTGATTTTGGGAGCTTGGATCGTGAGGACCGTGACGAGAACGCTCGAGAATCACGGCTAG

Coding sequence (CDS)

ATGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACGTAGTCTTACAAGATGGAATTCACTCCTTCCTGATATGAGGGTAAGTAGAGGTCCATTAGGTCCCACCGGTAGCTCATTTAGGGCGTTGAGAGAAGACAGAGTTCTTGATCCAGAAAATTTCCTTAAGGTTTTTGAGTTCCCACAAGCTCTCAACGTGTATCCCTTTGAGAATACTGGTGAAACCTCCTGGTGGTGTTCGTGGCATTTTTTCCAGCAAGATCAAGGTGTGACTGCTGCTGTTTTTTTGGGAGAAAATCAAAGAATTTTGGCGAAAAGTTCAAGGATTTCTTCAAGGGTAAGGATCTCAACATGGTTTGAGGAAGTAGCTGTTATTGTCTGCTTCATAGATCGCCATGATATAGCAGTTCCTCCATATGAGGCGCGAATTCGAGGCAGCGTCGAGACGTTACTTCCACAGCGTCTCGACGCTGCAAACTTTCCTGAAATAATTAGGGCATGCGCGCGACAGTGTCGCGACGCTGTCGCGCAGAATGAACAGTATATATATTTTGCGATGCCATCTGATTGGGGGAGCTGTTTTGGAGAGAGAAAGACGATTTTTAGAGAGGGAAAACACACAGAACATGGAAGAAACAAAGAGGGCTTGATTTTGGGAGCTTGGATCGTGAGGACCGTGACGAGAACGCTCGAGAATCACGGCTAG

Protein sequence

MFADSISLPFWGQDRVGSWERSLTRWNSLLPDMRVSRGPLGPTGSSFRALREDRVLDPENFLKVFEFPQALNVYPFENTGETSWWCSWHFFQQDQGVTAAVFLGENQRILAKSSRISSRVRISTWFEEVAVIVCFIDRHDIAVPPYEARIRGSVETLLPQRLDAANFPEIIRACARQCRDAVAQNEQYIYFAMPSDWGSCFGERKTIFREGKHTEHGRNKEGLILGAWIVRTVTRTLENHG
Homology
[Close]
BLAST of Lag0035734 vs. ExPASy TrEMBL
Match: A0A5D3C3J6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002960 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.3e-04
Identity = 22/31 (70.97%), Postives = 24/31 (77.42%), Query Frame = 0 

Query: 4   DSISLPFWGQDRVGSWERSLTRWNSLLPDMR 35
           DSI L FWGQDRVGSWE + TRWNS +P  R
Sbjct: 582 DSICLSFWGQDRVGSWEHNHTRWNSRIPTFR 612

[Close]
BLAST of Lag0035734 vs. ExPASy TrEMBL
Match: A0A5A7U2P4 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00730 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.3e-04
Identity = 23/32 (71.88%), Postives = 25/32 (78.12%), Query Frame = 0 

Query: 3   ADSISLPFWGQDRVGSWERSLTRWNSLLPDMR 35
           ADS+ L FWGQDRV SWE + TRWNSLLP  R
Sbjct: 469 ADSMFLSFWGQDRVESWEHNHTRWNSLLPTFR 500

The following BLAST results are available for this feature:
BLAST of Lag0035734 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0035734 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0035734 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C3J66.3e-0470.97Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00296... [more]
A0A5A7U2P46.3e-0471.88Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of Lag0035734 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0035734.1Lag0035734.1mRNA