Lag0035692 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0035692
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDelta-1-pyrroline-5-carboxylate synthase
Locationchr3: 27402362 .. 27404149 (+)
RNA-Seq ExpressionLag0035692
SyntenyLag0035692
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGTTCGTGCTCTTCAGTCTCTTCCCCATTCCAAAATAAATTTTAGTTGGAAAGAGTTCAAAGGTTCTTTAACTGGTTTGACCACTTCAAGTCTGGTAGTTCAAAAGCTTCTTCTTAGTGTTCCTTTTCAAAGCCTTTTGATGGGTTTTCTTTTCAAAATATTTGTTTTCATTTAGATGTTTTTACCATTTGTTTTCTTTGTTGTTTTTGTTTCATAAACTTGTAGAGTTTGTATCCTTTGAGCTTAGTCTATTTTTATTTACTCAATGAAAAACTTTGTTTCTAGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAACTGAGTGAGTTTAAAATAAAGCAAGCAAAATAGTAAGGCATCAAGCGGTGTAGGAATCACAAACCCAACAAAAATTGAGACCCGATTAACCCTTACAATTTTTTGCTGCTACTAATGCTTTGGCAATCTTACAACTTCAATTAGAAGGTGGCAGAACCGAAGAGTTCACATGCTCAAAATTTTAGTAATGGAAACTTTGGAAGGTCCTACAAATCTCTCCAACTTTCTTTTGCTCAATGTCTCTAACAAAACTAGTTACACTAGCCAACCAAAAATGGAGTTTAAAATAAAGAAAGCAAAAGCCACAAGAGCAAGAGGAAGTCAAGAAACCAACACAAAGTACCAAGTCTAACTTTCTTAAACTTTTTAACATTCCCTCTATCCCCTTCAAACTAAGCAAAACCCTCTAAGTCTTCTTTCAACCAAATTTCACTTATTCTATAAGCAAAATATCACAACAAAGTTACTATATATAGCTTAATGTTTATGAATAAGAGTTGGAACAATTTATGAACTAGTTGCTCTTTACCTGAGTGAGACAGAACTTGTTTCCTGCACCTCTTGATGCCTTACTATATATAGCTTAATGTTTATGAAGATTAGTTAAAAGTTTTGTTTGCTTTATCAAGAAAAAAATAAGGCGGTCGCTGCTTGGGAAAGTTTAAGGCAGCTTCAGGTAGTGGAAGGGAACAAGTTTTTATTTATGTGAGTTTGTAATCTTGGTAATATTAAATGTTTTTTGTTTCTCTTCAGGCTCTCAAAATTGAAGATATGAGAAACATATTGCTAGATGTAGCTGAAAATATGATTATGGTTGAGAACTATGTTGATATTGAAGTTACTGAGGATGCTAGTTATGAGAAGTCTTTGATATCTCATTTGACTTTAAAGTTTGGAAAGGTACTGTTTATATTTGTTCATTCTTATTTACTTTGGTTGCTTTGGAGTGATTTTGATGGTTAGAAAGCTATTTTTTTCTTTCATACTATCATTGTGTATTTCAAAATTGATGAATGCAGAAGCTAATCACTCAAATAGGTTAATTCACACGTTAACCAAGGAGTTTTAACCCATTAATTCTGATATCGTTGTATAAGTCTGACTGTGGTGTGCATTTTTGTCAAGTGCCTATTAAAGATGAGTCCTGTCTATAGTTTTAACTATTTCTCTTACATTCAATATTTCTGATTTGACATAGTACGTCCCACCAAACGAGTGTTAGCGTGCTTCATGTACTTCTTGTCAGCCTTGTGACTTTCTTTGTGATCTATTGAGGTGGATACTATGCACTTGAAAATGAGACTACGAGAGTTAGCTTTGTGACTTTCTTCCTAATCTATTGTGTTTGTAGTGGTAGTTTTTCTTAAAAGAAATAAAGTTAATAGTATCGTGGTTTGTATTGACCCACCACTAAATTTTGCAGGTGATGAAGATTACTACGAATCGGGTGATGTTGAGGAGGTCTTAG

mRNA sequence

ATGGGAGTTCGTGCTCTTCAGTCTCTTCCCCATTCCAAAATAAATTTTAGTTGGAAAGAGTTCAAAGGTTCTTTAACTGGTTTGACCACTTCAAGTCTGGCTCTCAAAATTGAAGATATGAGAAACATATTGCTAGATGTAGCTGAAAATATGATTATGGTTGAGAACTATGTTGATATTGAAGTTACTGAGGATGCTAGTTATGAGAAGTCTTTGATATCTCATTTGACTTTAAAGTTTGGAAAGGTGATGAAGATTACTACGAATCGGGTGATGTTGAGGAGGTCTTAG

Coding sequence (CDS)

ATGGGAGTTCGTGCTCTTCAGTCTCTTCCCCATTCCAAAATAAATTTTAGTTGGAAAGAGTTCAAAGGTTCTTTAACTGGTTTGACCACTTCAAGTCTGGCTCTCAAAATTGAAGATATGAGAAACATATTGCTAGATGTAGCTGAAAATATGATTATGGTTGAGAACTATGTTGATATTGAAGTTACTGAGGATGCTAGTTATGAGAAGTCTTTGATATCTCATTTGACTTTAAAGTTTGGAAAGGTGATGAAGATTACTACGAATCGGGTGATGTTGAGGAGGTCTTAG

Protein sequence

MGVRALQSLPHSKINFSWKEFKGSLTGLTTSSLALKIEDMRNILLDVAENMIMVENYVDIEVTEDASYEKSLISHLTLKFGKVMKITTNRVMLRRS
Homology
[Close]
BLAST of Lag0035692 vs. NCBI nr
Match: XP_038905635.1 (delta-1-pyrroline-5-carboxylate synthase-like isoform X2 [Benincasa hispida])

HSP 1 Score: 55.8 bits (133), Expect = 2.3e-04
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 0 

Query: 34  ALKIEDMRNILLDVA------ENMIMVENYVDIEVTEDASYEKSLISHLTLKFGKVMKIT 92
           ALK ED + ILLDVA      ENMIM EN  DI+  E+A YEK LIS L LK GK+ K+ 
Sbjct: 308 ALKSEDRKKILLDVADALEDNENMIMAENNADIKAAEEAGYEKPLISRLALKPGKI-KLL 367

[Close]
BLAST of Lag0035692 vs. NCBI nr
Match: XP_022982661.1 (delta-1-pyrroline-5-carboxylate synthase-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 55.8 bits (133), Expect = 2.3e-04
Identity = 33/56 (58.93%), Postives = 38/56 (67.86%), Query Frame = 0 

Query: 34  ALKIEDMRNILLDVA------ENMIMVENYVDIEVTEDASYEKSLISHLTLKFGKV 84
           ALK ED R ILLDVA      ENMI+ EN  DI+  E+A YEKSLIS L LK G++
Sbjct: 311 ALKSEDRRKILLDVANALQDNENMIIAENCADIKAAEEAGYEKSLISRLALKPGRI 366

[Close]
BLAST of Lag0035692 vs. NCBI nr
Match: AKP99746.1 (delta-1-pyrroline-5-carboxylate synthase [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 2.3e-04
Identity = 36/64 (56.25%), Postives = 41/64 (64.06%), Query Frame = 0 

Query: 34  ALKIEDMRNILLDVA------ENMIMVENYVDIEVTEDASYEKSLISHLTLKFGKVMKIT 92
           ALK ED R IL+DVA      ENMI+ EN  DI+  E+A YEK LIS L LK GKV K+ 
Sbjct: 311 ALKSEDRRKILMDVADALEDNENMILAENSADIKAAEEAGYEKPLISRLALKPGKV-KLL 370

[Close]
BLAST of Lag0035692 vs. NCBI nr
Match: XP_011651884.1 (delta-1-pyrroline-5-carboxylate synthase isoform X3 [Cucumis sativus] >XP_011651885.1 delta-1-pyrroline-5-carboxylate synthase isoform X3 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 2.3e-04
Identity = 36/64 (56.25%), Postives = 41/64 (64.06%), Query Frame = 0 

Query: 34  ALKIEDMRNILLDVA------ENMIMVENYVDIEVTEDASYEKSLISHLTLKFGKVMKIT 92
           ALK ED R IL+DVA      ENMI+ EN  DI+  E+A YEK LIS L LK GKV K+ 
Sbjct: 208 ALKSEDRRKILMDVADALEDNENMILAENSADIKAAEEAGYEKPLISRLALKPGKV-KLL 267

[Close]
BLAST of Lag0035692 vs. NCBI nr
Match: XP_004137758.1 (delta-1-pyrroline-5-carboxylate synthase isoform X1 [Cucumis sativus] >KGN59076.2 hypothetical protein Csa_002101 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 2.3e-04
Identity = 36/64 (56.25%), Postives = 41/64 (64.06%), Query Frame = 0 

Query: 34  ALKIEDMRNILLDVA------ENMIMVENYVDIEVTEDASYEKSLISHLTLKFGKVMKIT 92
           ALK ED R IL+DVA      ENMI+ EN  DI+  E+A YEK LIS L LK GKV K+ 
Sbjct: 311 ALKSEDRRKILMDVADALEDNENMILAENSADIKAAEEAGYEKPLISRLALKPGKV-KLL 370

[Close]
BLAST of Lag0035692 vs. ExPASy Swiss-Prot
Match: O04015 (Delta-1-pyrroline-5-carboxylate synthase OS=Actinidia deliciosa OX=3627 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.4e-04
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 0 

Query: 34  ALKIEDMRNILLDVA------ENMIMVENYVDIEVTEDASYEKSLISHLTLKFGKVMKI 87
           A+  +D   ILLDVA      E +I +EN  D+   + A YEKSLIS L LK GK+  +
Sbjct: 311 AMSPQDRSKILLDVADALEANEKLIRIENEADLAAAQQAGYEKSLISRLALKSGKISSL 369

The following BLAST results are available for this feature:
BLAST of Lag0035692 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038905635.12.3e-0454.69delta-1-pyrroline-5-carboxylate synthase-like isoform X2 [Benincasa hispida][more]
XP_022982661.12.3e-0458.93delta-1-pyrroline-5-carboxylate synthase-like isoform X2 [Cucurbita maxima][more]
AKP99746.12.3e-0456.25delta-1-pyrroline-5-carboxylate synthase [Cucumis sativus][more]
XP_011651884.12.3e-0456.25delta-1-pyrroline-5-carboxylate synthase isoform X3 [Cucumis sativus] >XP_011651... [more]
XP_004137758.12.3e-0456.25delta-1-pyrroline-5-carboxylate synthase isoform X1 [Cucumis sativus] >KGN59076.... [more]
BLAST of Lag0035692 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O040155.4e-0444.07Delta-1-pyrroline-5-carboxylate synthase OS=Actinidia deliciosa OX=3627 PE=2 SV=... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0035692.1Lag0035692.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009084 glutamine family amino acid biosynthetic process
cellular_component GO:0110165 cellular anatomical entity
molecular_function GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
molecular_function GO:0016740 transferase activity