Lag0035689 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0035689
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDNA-directed DNA polymerase
Locationchr3: 27245658 .. 27245996 (-)
RNA-Seq ExpressionLag0035689
SyntenyLag0035689
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCATGAACGATCAGAAGGTGGTGTGTAATGTTCTTTCCTCACTAAAATATCCTGATGATCCCAAAGAATGCAGCATGGTATCCCGCATAGACGTGTGCCCTCCGCAGGAAATAATATCAAATGCGTTCAGCCCCATAGGCGAAGGAAACGAGGAAGATCAGGTGAAAGAAAATTGCATCCTAGCACAGCATGAAGAAGTTATCCACATGTTGGATCTGAAAGGAAGAGTCCCCACCCTACCGTCTATAACACAACCTCCGGCGCTAGAACTCAAACCACTGTCAATGCATTTGAAGTATAGATTCTTGGGAGAAAAAAAACACTCCCAGTCATAA

mRNA sequence

ATGTGCATGAACGATCAGAAGGTGGTGTGTAATGTTCTTTCCTCACTAAAATATCCTGATGATCCCAAAGAATGCAGCATGGTATCCCGCATAGACGTGTGCCCTCCGCAGGAAATAATATCAAATGCGTTCAGCCCCATAGGCGAAGGAAACGAGGAAGATCAGGTGAAAGAAAATTGCATCCTAGCACAGCATGAAGAAGTTATCCACATGTTGGATCTGAAAGGAAGAGTCCCCACCCTACCGTCTATAACACAACCTCCGGCGCTAGAACTCAAACCACTGTCAATGCATTTGAAGTATAGATTCTTGGGAGAAAAAAAACACTCCCAGTCATAA

Coding sequence (CDS)

ATGTGCATGAACGATCAGAAGGTGGTGTGTAATGTTCTTTCCTCACTAAAATATCCTGATGATCCCAAAGAATGCAGCATGGTATCCCGCATAGACGTGTGCCCTCCGCAGGAAATAATATCAAATGCGTTCAGCCCCATAGGCGAAGGAAACGAGGAAGATCAGGTGAAAGAAAATTGCATCCTAGCACAGCATGAAGAAGTTATCCACATGTTGGATCTGAAAGGAAGAGTCCCCACCCTACCGTCTATAACACAACCTCCGGCGCTAGAACTCAAACCACTGTCAATGCATTTGAAGTATAGATTCTTGGGAGAAAAAAAACACTCCCAGTCATAA

Protein sequence

MCMNDQKVVCNVLSSLKYPDDPKECSMVSRIDVCPPQEIISNAFSPIGEGNEEDQVKENCILAQHEEVIHMLDLKGRVPTLPSITQPPALELKPLSMHLKYRFLGEKKHSQS
Homology
BLAST of Lag0035689 vs. NCBI nr
Match: XP_024035546.1 (uncharacterized protein LOC112096353 [Citrus clementina])

HSP 1 Score: 68.6 bits (166), Expect = 4.0e-08
Identity = 44/120 (36.67%), Postives = 67/120 (55.83%), Query Frame = 0

Query: 1   MCMNDQKVVCNVLSSLKYPDDPKECSMVSRIDVCPPQEI------ISNAFSPIGEGNEED 60
           M +NDQ+V  NVL +++ PD+ ++C+ +S +D+     +      + N  +P  E  EED
Sbjct: 412 MRVNDQQVTFNVLEAMRNPDEIEDCNFLSEVDLVVANRMDKCCSNVLNKVTPFEEVEEED 471

Query: 61  --QVKENCILAQ----HEEVIHMLDLKGR--VPTLPSITQPPALELKPLSMHLKYRFLGE 107
              ++ + +  Q    H  VI  L+L  R   PTLPSI  P +LELK L  HLKY +LG+
Sbjct: 472 VAAIQTDWMDKQQSNRHTRVIEHLNLSDREVKPTLPSIESPSSLELKLLPSHLKYAYLGQ 531

BLAST of Lag0035689 vs. NCBI nr
Match: XP_023521781.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111785639, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.2 bits (165), Expect = 5.3e-08
Identity = 41/109 (37.61%), Postives = 59/109 (54.13%), Query Frame = 0

Query: 3   MNDQKVVCNVLSSLKYPDDPKECSMVSRIDVCPPQEIISNAFSPIGEGNE-EDQVKENCI 62
           M DQKV  N+  S+KYP   KECS V  +   P  E   +  S   E +   D++++  +
Sbjct: 418 MGDQKVEFNINDSMKYPAVTKECSAVYELTEQPATEEWDDGESGQEEDSSWNDRIEQLAV 477

Query: 63  LAQHEEVIHMLDLKGR--VPTLPSITQPPALELKPLSMHLKYRFLGEKK 109
           L +       L+ +GR   P  PSI + P L+LKPL  +LKY +LG+KK
Sbjct: 478 LGEFNRTFESLECEGRKSSPMRPSIEEAPQLDLKPLPPNLKYAYLGDKK 526

BLAST of Lag0035689 vs. NCBI nr
Match: XP_024963864.1 (uncharacterized protein LOC112504144 [Cynara cardunculus var. scolymus])

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-07
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 0

Query: 1   MCMNDQKVVCNVLSSLKYPDDPKECSMVSRIDVCPPQEIISNAFSPIGEGNEE-----DQ 60
           M + DQKV  NV +SLKYPD  +ECS +S I+    +E I   F    E +EE     ++
Sbjct: 159 MRLQDQKVTFNVFNSLKYPDYLEECSRISEIEEMCFEEGIQKNFKLEEEFDEEIEGDVEE 218

Query: 61  VKE--NCILAQHEEVIHMLDLKGRVPTLPSITQPPALELKPLSMHLKYRFLGEKK 109
           +++    I+        +L+        PSI  PP LELK L+ HLKY FLGE++
Sbjct: 219 IEKIGTDIVPVDAAAFELLENNEHKDFTPSIESPPDLELKQLTSHLKYAFLGEEE 273

BLAST of Lag0035689 vs. NCBI nr
Match: XP_023521407.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111785222 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-07
Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 0

Query: 3   MNDQKVVCNVLSSLKYPDDPKECSMVSRIDVCPPQEIISNAFSPIGEGNE-EDQVKENCI 62
           M DQKV  N+  S+KYP   +ECS V  +   P  E   +  S   E +   D++++  +
Sbjct: 830 MGDQKVEFNINDSMKYPAVTEECSAVYELTEQPATEEWDDGESGQEEDSSWNDRIEQLAV 889

Query: 63  LAQHEEVIHMLDLKGR--VPTLPSITQPPALELKPLSMHLKYRFLGEKK 109
           L +       L+ +GR   P  PSI + P L+LKPL  +LKY +LG+KK
Sbjct: 890 LGEFSRTFESLECEGRKSSPMRPSIEEAPQLDLKPLPPNLKYAYLGDKK 938

BLAST of Lag0035689 vs. NCBI nr
Match: XP_030502183.1 (uncharacterized protein LOC115717351 [Cannabis sativa])

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-07
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 0

Query: 1   MCMNDQKVVCNVLSSLKYPDDPKECSMVSRID----------VCPPQEIISNAFSPIGEG 60
           M +NDQKV  NV +++++PD+ +ECS +S ID           C  ++ IS +F  + + 
Sbjct: 260 MRVNDQKVTFNVFNAMRFPDEIEECSRISVIDSIVAEKFHKEACKDEKFIS-SFDELEDL 319

Query: 61  NEEDQ-----VKENCILAQHEEVIHMLDLK--GRVPTLPSITQPPALELKPLSMHLKYRF 107
           +E++      V+    + + ++    L+LK     P  PS  +PP LELKPL  HLKY +
Sbjct: 320 SEDEDNQVAWVEPLQPMPKFKKPFESLELKESNFKPPKPSTQEPPKLELKPLPSHLKYAY 379

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_024035546.14.0e-0836.67uncharacterized protein LOC112096353 [Citrus clementina][more]
XP_023521781.15.3e-0837.61LOW QUALITY PROTEIN: uncharacterized protein LOC111785639, partial [Cucurbita pe... [more]
XP_024963864.11.2e-0738.26uncharacterized protein LOC112504144 [Cynara cardunculus var. scolymus][more]
XP_023521407.11.5e-0736.70LOW QUALITY PROTEIN: uncharacterized protein LOC111785222 [Cucurbita pepo subsp.... [more]
XP_030502183.11.5e-0734.96uncharacterized protein LOC115717351 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0035689.1Lag0035689.1mRNA