Lag0035684 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0035684
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationchr3: 27075387 .. 27077291 (-)
RNA-Seq ExpressionLag0035684
SyntenyLag0035684
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAGCTCACCAGAACGAAGTCGTGGGTCATCGGAGGTTGTGTGGGCAGGTTCGTTGCGAATGAAAGCATAGGTTCATTGGATCAAGACTATGATGGAGGCGGCGTTGCGTTCGTCGGAACAGTGGTGGAAAATAATGGTGGTGAGATGTAGAATTAGGAGGAAGAAAAAAAAATGGAGAAGGTTTTAACCATTGAAATGTTTCTCCCCTTTCGTTATTCCTCCTTTTTTTGTGTTATTCTCCTCCCGGCCCCTTCGTTCCTTGTTCCTAGTATTTTTTCTCCCAGATAGTTCTTGTCTTCATTCTACTCCACAAGCTCCTTTTATAGGAGAGCTTCAAGAGTGGTTGGAGAGAATAGGGTGGGGAGTTGAGAAAAGGGGGGAGTGAGGTTAGAAAGTTAGAGAAAGAAGGGGAGAAGGAAGGTTGGGAGAAGAAGGGGAGAGGGAGAATGAGAAGGAAGGCGGAGTGAAAGACCAAAGAAAAAAAAATTAAATAAAGAAATAAATTAAATAAAAACAAAAAAAAAGAATGAAAATAAACAATGCAAACCAAAAAACAAAATGTTTTTGATAATATGTGGGAAGGGAGATTCAAACCACAGATCTTGTGGTTATCAATATAGTTTTATGCCAGTTGAGCTATGCTCTTGGTTGAATACCAAAAAACAAATTGACCACCACATATTGGAAAAATTCAAATATTAATACTAAAAATCAAGTCGGACCAAATACGGTGTCTACAATTGGGATAAATGTGGGGCATGATATTATCCAGGATCTTGCTAAAAAATACGGCTGCAAAATAGGAACTTGGCCCAACTCTTATTTAGGGCTCCCCTTAAATGGGTCTCCCAGGACCTTGTCTTTTTGGAATCCTATTATTGAAAAGATCGAAAAAAAGGCTCTTGGTATGGGGATCATCATATATTTCGAGGGGGGGGGGGACACACACTCTCATCCAAGTCACATTATCAAACCTCCCCACATATTTTATGTCACTGTTTAATATGCCTAGTAAGGTTCCAAACAGATTGGAAAGATTATTCAGGAATTTCCTTTGAAAAGATGGGCAGCATCTTGTTAGGTGGACATAAAATATGTGGGGGGGGGGGTGACACACACTCTCATCCAAGTCACATTATCAAACCTCCCCACATATTTTATGTCACTGTTTAATATGCCTAGTAAGGTTCCAAACAGATTGGAAAGATTATTCAGGAATTTCCTTTGAAAAGATGGGCAGCATCTTGTTAGGTGGAGTACCATTATTTGCCCTTTGAAGCTAGGTGGCCTTGGTTTGCTTTCTGTGAGAGACAAAACATGGCGCTCCTTGCGAAATGGATCTAGAGATTCAACCACGAAAAGGCAGCATTAGGGCGAAAACTTATTAATGGAAAATACGAATCCTCCACATATTTGAATTGGCCATCTCTTACCAAAACCAAAGGCCCCTAGAAAGCCATCGTCAAGCATCAAGATCTTGTGATCAGTAGAATTTGTCATCAAGTAGGGGATGGAGAATCAACTCGTTTTTTGCATGGCCTTTAGGCATCTAACCTTCCTCTTTTCGCTAAATTTCCTCTATTATACAGGCTGTCTCGATGCAAAAATTCCATGGTGAAAGATGTGTGGAACAAAAATGACTCTTTTTGGGACCTTCTGTTGGTTAGGAACTTGAAAGACGACGAAGGTGTTGAATGGACTGAGTTAAGTTTCATCCTTGAACCCATTGTCCTCTCACAAGCTACTGATTTGTGGAAATGGCCTCTTAGCACAAACGGCCACTTCTCCACAAAGTCTTTGATGGCGGATATGGGAGACTTATCCTCCCATTTGGAGACTCAACTAATTCAGGTTATTTGGAAAGATACATACCCAAAGAAGATCAAATTCTTCCTTTAG

mRNA sequence

ATGGATCAGCTCACCAGAACGAAGTCGTGGGTCATCGGAGGTTGTGTGGGCAGGTTCGTTGCGAATGAAAGCATAGGTTCATTGGATCAAGACTATGATGGAGGCGGCGTTGCGTTCGTCGGAACAGTGGTGGAAAATAATGGTGGTGAGATGCTGTCTCGATGCAAAAATTCCATGGTGAAAGATGTGTGGAACAAAAATGACTCTTTTTGGGACCTTCTGTTGGTTAGGAACTTGAAAGACGACGAAGGTGTTGAATGGACTGAGTTAAGTTTCATCCTTGAACCCATTGTCCTCTCACAAGCTACTGATTTGTGGAAATGGCCTCTTAGCACAAACGGCCACTTCTCCACAAAGTCTTTGATGGCGGATATGGGAGACTTATCCTCCCATTTGGAGACTCAACTAATTCAGGTTATTTGGAAAGATACATACCCAAAGAAGATCAAATTCTTCCTTTAG

Coding sequence (CDS)

ATGGATCAGCTCACCAGAACGAAGTCGTGGGTCATCGGAGGTTGTGTGGGCAGGTTCGTTGCGAATGAAAGCATAGGTTCATTGGATCAAGACTATGATGGAGGCGGCGTTGCGTTCGTCGGAACAGTGGTGGAAAATAATGGTGGTGAGATGCTGTCTCGATGCAAAAATTCCATGGTGAAAGATGTGTGGAACAAAAATGACTCTTTTTGGGACCTTCTGTTGGTTAGGAACTTGAAAGACGACGAAGGTGTTGAATGGACTGAGTTAAGTTTCATCCTTGAACCCATTGTCCTCTCACAAGCTACTGATTTGTGGAAATGGCCTCTTAGCACAAACGGCCACTTCTCCACAAAGTCTTTGATGGCGGATATGGGAGACTTATCCTCCCATTTGGAGACTCAACTAATTCAGGTTATTTGGAAAGATACATACCCAAAGAAGATCAAATTCTTCCTTTAG

Protein sequence

MDQLTRTKSWVIGGCVGRFVANESIGSLDQDYDGGGVAFVGTVVENNGGEMLSRCKNSMVKDVWNKNDSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGHFSTKSLMADMGDLSSHLETQLIQVIWKDTYPKKIKFFL
Homology
[Close]
BLAST of Lag0035684 vs. NCBI nr
Match: KAA0035255.1 (choline-phosphate cytidylyltransferase [Cucumis melo var. makuwa] >TYK07580.1 choline-phosphate cytidylyltransferase [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-06
Identity = 29/85 (34.12%), Postives = 43/85 (50.59%), Query Frame = 0 

Query: 68  DSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGHFSTKSLMADMGD 127
           D  W++   RNL++ E  +W  L  +L  +  + + D W W L  NG+FS+KSL  D+  
Sbjct: 17  DRGWNISYRRNLQEGEFEDWLALMDLLSTVTPTTSRDKWTWNLDKNGNFSSKSLATDLDT 76

Query: 128 LSSHLETQLIQVIWKDTYPKKIKFF 153
                 + L   IW D YPK+   F
Sbjct: 77  NGQETNSSLFNAIWTDFYPKRSNSF 101

[Close]
BLAST of Lag0035684 vs. NCBI nr
Match: KAA0045138.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK23599.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-05
Identity = 34/102 (33.33%), Postives = 53/102 (51.96%), Query Frame = 0 

Query: 56  KNSMVKDVWNKNDSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGH 115
           K   VKD WN  D+ W+++  R L D E  +W ++  IL     ++ +    W   +N  
Sbjct: 709 KEISVKDAWNTFDNRWNIIFRRELNDRERSKWAKILEILPTPRSNRGSSKLTWNPDSNNS 768

Query: 116 F---STKSLMADMGDLS-SHLETQLIQVIWKDTYPKKIKFFL 154
           F   S K+L++   D S      +L+++IWK T P KIKFF+
Sbjct: 769 FSIASAKALISRQLDQSPGDPRAKLLEIIWKSTIPMKIKFFM 810

[Close]
BLAST of Lag0035684 vs. NCBI nr
Match: KAA0051757.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-05
Identity = 31/102 (30.39%), Postives = 50/102 (49.02%), Query Frame = 0 

Query: 56  KNSMVKDVWNKNDSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGH 115
           K+  VKD WN  D+ W+++  R L D E  +W ++  IL     ++ +    W   +N  
Sbjct: 4   KSPSVKDAWNTFDNQWNIIFRRELNDRERSKWAKILEILPTPRSNRGSSKPTWTPDSNNS 63

Query: 116 FSTKS----LMADMGDLSSHLETQLIQVIWKDTYPKKIKFFL 154
           FS  S    +   +         +L+++IWK T P KIKFF+
Sbjct: 64  FSIASAKVLISRQLDQSPGDPRAKLLEIIWKSTIPMKIKFFM 105

[Close]
BLAST of Lag0035684 vs. NCBI nr
Match: XP_008446987.1 (PREDICTED: uncharacterized protein LOC103489530 [Cucumis melo])

HSP 1 Score: 58.5 bits (140), Expect = 5.7e-05
Identity = 34/102 (33.33%), Postives = 52/102 (50.98%), Query Frame = 0 

Query: 56  KNSMVKDVWNKNDSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGH 115
           K   VKD WN  D+ W+++  R L D E  +W ++  IL     ++ +    W   +N  
Sbjct: 404 KEISVKDAWNTFDNQWNIIFRRELNDRERCKWAKILEILPTPRSNRRSSKPTWTPDSNNS 463

Query: 116 F---STKSLMADMGDLSSH-LETQLIQVIWKDTYPKKIKFFL 154
           F   S K L++   D S      +L+++IWK T P KIKFF+
Sbjct: 464 FSIASAKVLISRQLDQSPRDPRAKLLEIIWKSTIPMKIKFFM 505

[Close]
BLAST of Lag0035684 vs. NCBI nr
Match: KAA0047098.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK05060.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 5.7e-05
Identity = 34/102 (33.33%), Postives = 52/102 (50.98%), Query Frame = 0 

Query: 56  KNSMVKDVWNKNDSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGH 115
           K   VKD WN  D+ W+++  R L D E  +W ++  IL     ++ +    W   +N  
Sbjct: 442 KEISVKDAWNTFDNQWNIIFRRELNDRERCKWAKILEILPTPRSNRRSSKPTWTPDSNNS 501

Query: 116 F---STKSLMADMGDLSSH-LETQLIQVIWKDTYPKKIKFFL 154
           F   S K L++   D S      +L+++IWK T P KIKFF+
Sbjct: 502 FSIASAKVLISRQLDQSPRDPRAKLLEIIWKSTIPMKIKFFM 543

The following BLAST results are available for this feature:
BLAST of Lag0035684 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0035255.11.0e-0634.12choline-phosphate cytidylyltransferase [Cucumis melo var. makuwa] >TYK07580.1 ch... [more]
KAA0045138.12.0e-0533.33LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK235... [more]
KAA0051757.13.3e-0530.39pol protein [Cucumis melo var. makuwa][more]
XP_008446987.15.7e-0533.33PREDICTED: uncharacterized protein LOC103489530 [Cucumis melo][more]
KAA0047098.15.7e-0533.33LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK050... [more]
BLAST of Lag0035684 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0035684.1Lag0035684.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
molecular_function GO:0016787 hydrolase activity