Lag0035650 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0035650
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	LRRNT_2 domain-containing protein
Location	chr3: 26396897 .. 26398865 (-)
RNA-Seq Expression	Lag0035650
Synteny	Lag0035650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATATAAGGAGGAGATAATTGAGAAGTCCCACATCGGGCAAGCACGCAGCAAGGACCACACACAATCTGCTATAAATACAAACGATGGCAACGATTTGAACATACTTACCTGGACGGGGTCAATGGGCGATCAAAAAGGCTCATGGCCTAGATTGGTGACTCCATTGCACATTCGGAAGGGTGCCCGTCTAAGGTCTGTCCAAAGTGGCAGAGCCTACGTCATAATTTGTGGTAGTGGGGGCCTGCGTTCGCGCGGCCCCTCTCAATGCACCAGTTTCAAGAGTTCCATTTCAAGGTAGTTTCTACCCTTACTGCTACCAGATTATTTGAAATTGTGTAAGGAATGTTTTGGGCTACAAATTGATTTAGGGAAATTAGTGTCGTTTTGGTCCAAATTGAGATGCGTTCGTCTCAGATACTGCAGAAGAAACAAAGTAACTGACATTGAAGGTTCAAGTGGTTTTATTCTCTTTTTGTTTGTCTCGACGTTATGGTTTAAGAGAAGGAAGCAAGGGTATAACGGGAGAACTTTATTATGTTGTTCTCAGCTAAAAATGGGTCAGGTTGTAGTTCCATATTTTCTATGTGAACGGGTGAAGTATCAGAAAGGGAGGAAGAATGAAAGGGGTTCTTCATGTTCCGTTACCTTTTTGAAATTGAGCGATGTTTCTGAATGATAGTGACAAATGTAGGGTTTTCAAATTTAGGAGAATGGAAGTCGCTTTGAACAATAAGAACCAAACAGGATAAAGAACTTGAATTGGAAAGTAAACAGATGAAAGCATTCATAAGATGAGTTGCGAGTGAATTGATTATGGGCTATTTGACTTATGGTATCTGTGGAGACCCTTGATGGTTAACGATAGTAAAAAAAAACATTTCTAGTGATAAAAATTTTCTAGAACCACTTTTTTGAGGCTGCTTTCTGCATTTTGTAGTCATCTGATTCTAGGTTGTGTGTGACGCCTGCAAATATTCTTGTCATTGAAATCAATGTTTTCGTTTGATGTATTTCTATTTGTGTGATCGCTCCAAGGGGTTCAAAGTATGAAAATTTTTATTTTTTCTAGTAAGAGCTTGAATGTTACCTTTTTGAGCCACATTTGATTTGCTCAATATCTTCTCTCTGTTTGAACTCGAGATGCGTTCCATTTCCCAGCAGAAGTCTTTAACGGGCTGATTGGTCCAATGGTTTGGAATGAGTTGGAATGGATTGGAAAGGGATGCCCACGTGTTGGTTGGCCTGGAATGGTGTGGGTTTGGAATCAAATGGTGGGAATGTGGATTCCAACCCATTTCCACATTTTGGTGGGTCTCACTATTTATCTCTCCATTTTTCTTAATAATTTTGATGGAACCTACTATTTCTCTTTCTATTTCAACCACATTTTGGTGGGTTCCACTATTCTCTTTCTATTTTTCTTCATAATTTTGATGGGACCCACCATTTCTTTTTCTATTTTCCTTATAATTTTGGTGGGTCCCACTATTCTCTCTTCATTAATTCCAACTTAAATCCAAAGCAACAAACACAGGCATGAGAATCATGATTCCAGCAAAATATTTCCATGGGAATCACATTTCATTCCATTCCAATCAAATTCTGACGCACTAAACGACCCCTAAGGGGGTGTTTGGGGCACTGAATAGGTTATAATAACCCCCCTTATTATTTTTGTTGGTGCCCTCACCAATTATTTTTGTTGGTGCCCCAAACATTGAATAGGTTATAATAAGGGGGGTTATTATAACCTATTCAATGTTTGGGGCACCAACAAAAATAATTGGTGAGGTGGGTTATTTTAACCCCCAATTATTTTATCCATTTTCTACAGTAACCATTATTCAACCCACTACAGTAACTATCTCCTCACTTCTTCCATGCAACTCCTTGACTTTTCCGACGACCGCCAGCCGCCATCAGCCGGCGAAGTTTCCGACGACTTTTCCAGCGATCACCGATGA

mRNA sequence

ATGAAATATAAGGAGGAGATAATTGAGAAGTCCCACATCGGGCAAGCACGCAGCAAGGACCACACACAATCTGCTATAAATACAAACGATGGCAACGATTTGAACATACTTACCTGGACGGGGTCAATGGGCGATCAAAAAGGCTCATGGCCTAGATTGGTGACTCCATTGCACATTCGGAAGGGTGCCCGTCTAAGGTCTGTCCAAAGTGGCAGAGCCTACGTCATAATTTGTGGTAGTGGGGGCCTGCGTTCGCGCGGCCCCTCTCAATGCACCAGTTTCAAGAGTTCCATTTCAAGTAACCATTATTCAACCCACTACAGTAACTATCTCCTCACTTCTTCCATGCAACTCCTTGACTTTTCCGACGACCGCCAGCCGCCATCAGCCGGCGAAGTTTCCGACGACTTTTCCAGCGATCACCGATGA

Coding sequence (CDS)

ATGAAATATAAGGAGGAGATAATTGAGAAGTCCCACATCGGGCAAGCACGCAGCAAGGACCACACACAATCTGCTATAAATACAAACGATGGCAACGATTTGAACATACTTACCTGGACGGGGTCAATGGGCGATCAAAAAGGCTCATGGCCTAGATTGGTGACTCCATTGCACATTCGGAAGGGTGCCCGTCTAAGGTCTGTCCAAAGTGGCAGAGCCTACGTCATAATTTGTGGTAGTGGGGGCCTGCGTTCGCGCGGCCCCTCTCAATGCACCAGTTTCAAGAGTTCCATTTCAAGTAACCATTATTCAACCCACTACAGTAACTATCTCCTCACTTCTTCCATGCAACTCCTTGACTTTTCCGACGACCGCCAGCCGCCATCAGCCGGCGAAGTTTCCGACGACTTTTCCAGCGATCACCGATGA

Protein sequence

MKYKEEIIEKSHIGQARSKDHTQSAINTNDGNDLNILTWTGSMGDQKGSWPRLVTPLHIRKGARLRSVQSGRAYVIICGSGGLRSRGPSQCTSFKSSISSNHYSTHYSNYLLTSSMQLLDFSDDRQPPSAGEVSDDFSSDHR

Homology

[Close]

BLAST of Lag0035650 vs. NCBI nr
Match: KAG6601453.1 (CSC1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-18
Identity = 63/137 (45.99%), Postives = 79/137 (57.66%), Query Frame = 0


Query: 5   EEIIEKSHIGQARSKDHTQSAINTNDGNDLNILTWTGSMGDQKGSWPRLVTPLHIRKGAR 64
           E  +  SHI +   ++  ++     + N  NILTWTGSMGDQ+ SWPRLVT + +R+GAR
Sbjct: 19  EATLRSSHIEKVCEEERLEAVYKARNYNRCNILTWTGSMGDQEDSWPRLVTSIALRRGAR 78

Query: 65  LRSVQSGRAYVIICGSGGLRSRGPSQCTSFKSSISSNHYSTH-YSNYLLTSSMQLLDFSD 124
           LRS QSGRAYVIICGSGGLRSRGP      K   S      H +   L  S +++   S 
Sbjct: 79  LRSAQSGRAYVIICGSGGLRSRGPFPMDEVKIYRSRAFPCDHLHLLKLSVSQIKVTVISS 138

Query: 125 DRQPPS-----AGEVSD 136
             + PS      GE SD
Sbjct: 139 QSKTPSELIKTVGEASD 155

[Close]

BLAST of Lag0035650 vs. NCBI nr
Match: RQO90039.1 (hypothetical protein POPTR_005G048250 [Populus trichocarpa])

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-13
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 35 NILTWTGSMGDQKGSWPRLVTPLHIRKGARLRSVQSGRAYVIICGSGGLRSRGP 89
          N+LTWTGSMGDQ+GSW RLVT + +R+GARLRS Q+GR YV ICG GG  SRGP
Sbjct: 6  NLLTWTGSMGDQQGSWSRLVTSIALRRGARLRSPQAGRVYVKICGRGGCASRGP 59

[Close]

BLAST of Lag0035650 vs. NCBI nr
Match: KAG8651246.1 (hypothetical protein MANES_07G105300v8 [Manihot esculenta])

HSP 1 Score: 85.9 bits (211), Expect = 3.1e-13
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 36 ILTWTGSMGDQKGSWPRLVTPLHIRKGARLRSVQSGRAYVIICGSGGLRSRGPSQ 91
          ILTWTGSM DQ+G WPR VT + +R+GA LRS Q GRAYV+ICG GGLRSRGP Q
Sbjct: 13 ILTWTGSMCDQEGPWPRSVTSIALRRGAGLRSPQVGRAYVVICGRGGLRSRGPYQ 67

[Close]

BLAST of Lag0035650 vs. NCBI nr
Match: TYJ17978.1 (hypothetical protein E1A91_A09G090300v1, partial [Gossypium mustelinum])

HSP 1 Score: 82.4 bits (202), Expect = 3.4e-12
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 35 NILTWTGSMGDQKGSWPRLVTPLHIRKGARLRSVQSGRAYVIICGSGGLRSRGP 89
          NILTW GS+GDQ+  W R+VT + +R+GA LRS Q GRAYVIICGSGG RSRGP
Sbjct: 6  NILTWAGSIGDQEDPWSRVVTSIALRRGAPLRSPQVGRAYVIICGSGGQRSRGP 59

[Close]

BLAST of Lag0035650 vs. NCBI nr
Match: KAG6775181.1 (hypothetical protein POTOM_018614 [Populus tomentosa])

HSP 1 Score: 81.3 bits (199), Expect = 7.6e-12
Identity = 44/75 (58.67%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 26  INTNDGNDLNILTWTGSMGDQKGSWPRLVTPLHIRKGARLRSVQSGRAYVIICGSGGLRS 85
           IN        +LTWTGSMGDQ+GSW RLVT + +R+GA LRS Q+GRA V ICG GG  S
Sbjct: 8   INRRHEATFYLLTWTGSMGDQQGSWSRLVTSIALRRGASLRSPQAGRACVKICGRGGCAS 67

Query: 86  RGPSQCTSFKSSISS 101
           RGP Q  S  S++SS
Sbjct: 68  RGPCQLKS--SNLSS 80

The following BLAST results are available for this feature:

BLAST of Lag0035650 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601453.1	2.4e-18	45.99	CSC1-like protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
RQO90039.1	1.8e-13	72.22	hypothetical protein POPTR_005G048250 [Populus trichocarpa]	[more]
KAG8651246.1	3.1e-13	72.73	hypothetical protein MANES_07G105300v8 [Manihot esculenta]	[more]
TYJ17978.1	3.4e-12	70.37	hypothetical protein E1A91_A09G090300v1, partial [Gossypium mustelinum]	[more]
KAG6775181.1	7.6e-12	58.67	hypothetical protein POTOM_018614 [Populus tomentosa]	[more]

BLAST of Lag0035650 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0035650.1	Lag0035650.1	mRNA