Lag0035638 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0035638
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr3: 26023318 .. 26023788 (+)
RNA-Seq ExpressionLag0035638
SyntenyLag0035638
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCTGTCCAGTATGCTTTTGGAGGCTGAAGCTACCAATAGGATTTCAGGTCTAAAGCTGGCTAGACGATGCCCGATAATATCTCACTTATTTTTTGCAGATGATAGTTTGTTTTTCTTCAGGGCTAAGAAGAGCGAGACCCGGAGTGTGCAGGAGATACTGGGAAGTTATGAGCGGGCGTCTGGGCAGACCATCAATTTTGACAAATCTGTCATCTCTTTTAGCCCATGTACGGTGCCCAGTGTGCAGGAAGACATAGGCCAGATTCTTCAGGTCCAGATTACAGCATCCCATAACCAATACTTGGGGCTCCCTTCGTTCATGCCCAAGAACAGAACAAGCACTTTGAAGTTTGTCAAGGAACGGGTGTGGAAGCAGATTCAGGGGTGGAAGGGGAAACTATTCTCTGTAGGAGGCGTGAAATCCTGCTTAAATCCATTGTGTAGGCTATCCCATGCTACTCCATGA

mRNA sequence

ATGGGGCTGTCCAGTATGCTTTTGGAGGCTGAAGCTACCAATAGGATTTCAGGTCTAAAGCTGGCTAGACGATGCCCGATAATATCTCACTTATTTTTTGCAGATGATAGTTTGTTTTTCTTCAGGGCTAAGAAGAGCGAGACCCGGAGTGTGCAGGAGATACTGGGAAGTTATGAGCGGGCGTCTGGGCAGACCATCAATTTTGACAAATCTGTCATCTCTTTTAGCCCATGTACGGTGCCCAGTGTGCAGGAAGACATAGGCCAGATTCTTCAGGTCCAGATTACAGCATCCCATAACCAATACTTGGGGCTCCCTTCGTTCATGCCCAAGAACAGAACAAGCACTTTGAAGTTTGTCAAGGAACGGGTGTGGAAGCAGATTCAGGGGTGGAAGGGGAAACTATTCTCTGTAGGAGGCGTGAAATCCTGCTTAAATCCATTGTGTAGGCTATCCCATGCTACTCCATGA

Coding sequence (CDS)

ATGGGGCTGTCCAGTATGCTTTTGGAGGCTGAAGCTACCAATAGGATTTCAGGTCTAAAGCTGGCTAGACGATGCCCGATAATATCTCACTTATTTTTTGCAGATGATAGTTTGTTTTTCTTCAGGGCTAAGAAGAGCGAGACCCGGAGTGTGCAGGAGATACTGGGAAGTTATGAGCGGGCGTCTGGGCAGACCATCAATTTTGACAAATCTGTCATCTCTTTTAGCCCATGTACGGTGCCCAGTGTGCAGGAAGACATAGGCCAGATTCTTCAGGTCCAGATTACAGCATCCCATAACCAATACTTGGGGCTCCCTTCGTTCATGCCCAAGAACAGAACAAGCACTTTGAAGTTTGTCAAGGAACGGGTGTGGAAGCAGATTCAGGGGTGGAAGGGGAAACTATTCTCTGTAGGAGGCGTGAAATCCTGCTTAAATCCATTGTGTAGGCTATCCCATGCTACTCCATGA

Protein sequence

MGLSSMLLEAEATNRISGLKLARRCPIISHLFFADDSLFFFRAKKSETRSVQEILGSYERASGQTINFDKSVISFSPCTVPSVQEDIGQILQVQITASHNQYLGLPSFMPKNRTSTLKFVKERVWKQIQGWKGKLFSVGGVKSCLNPLCRLSHATP
Homology
BLAST of Lag0035638 vs. NCBI nr
Match: XP_021621434.1 (uncharacterized protein LOC110621459 [Manihot esculenta])

HSP 1 Score: 139.4 bits (350), Expect = 2.6e-29
Identity = 67/136 (49.26%), Postives = 90/136 (66.18%), Query Frame = 0

Query: 2   GLSSMLLEAEATNRISGLKLARRCPIISHLFFADDSLFFFRAKKSETRSVQEILGSYERA 61
           GLS +L +AE+  R+ G K + RCP ISHLFFADDSL FF A+  E  S++ IL +Y  A
Sbjct: 331 GLSLLLKDAESRGRLQGCKASARCPKISHLFFADDSLLFFNARLEEADSIKSILNTYAAA 390

Query: 62  SGQTINFDKSVISFSPCTVPSVQEDIGQILQVQITASHNQYLGLPSFMPKNRTSTLKFVK 121
           SGQ +NF+KS I F+P  V SV+ +I  IL V    SH+ YLGLPS + +N+ +   F+K
Sbjct: 391 SGQVVNFNKSGIFFNPNVVSSVRSNISNILDVHSPLSHSAYLGLPSLIGRNKKAVFDFLK 450

Query: 122 ERVWKQIQGWKGKLFS 138
           ER+WK+I  W  +  S
Sbjct: 451 ERMWKRINSWGSRFLS 466

BLAST of Lag0035638 vs. NCBI nr
Match: XP_030946812.1 (uncharacterized protein LOC115971195 [Quercus lobata])

HSP 1 Score: 138.3 bits (347), Expect = 5.8e-29
Identity = 66/139 (47.48%), Postives = 92/139 (66.19%), Query Frame = 0

Query: 2   GLSSMLLEAEATNRISGLKLARRCPIISHLFFADDSLFFFRAKKSETRSVQEILGSYERA 61
           GL S++ + E +  I G+ L    P +SHLFFADDSL F RA   E  S+ EIL  YE A
Sbjct: 658 GLHSLIQQVEISGSIKGVSLCSTVPKVSHLFFADDSLLFCRANSQEVSSIMEILKQYEEA 717

Query: 62  SGQTINFDKSVISFSPCTVPSVQEDIGQILQVQITASHNQYLGLPSFMPKNRTSTLKFVK 121
           SGQ IN +K+ + FSP T P VQE+I  +L V  T ++ +YLGLPSF+ + +  +  +++
Sbjct: 718 SGQQINREKTQLFFSPNTDPHVQEEIKTLLGVAATTNYEKYLGLPSFVGRGKKQSFAYIR 777

Query: 122 ERVWKQIQGWKGKLFSVGG 141
           ERVW+++QGWK +L S GG
Sbjct: 778 ERVWQKMQGWKERLLSQGG 796

BLAST of Lag0035638 vs. NCBI nr
Match: XP_030939975.1 (uncharacterized protein LOC115964883 [Quercus lobata])

HSP 1 Score: 137.5 bits (345), Expect = 9.8e-29
Identity = 66/139 (47.48%), Postives = 92/139 (66.19%), Query Frame = 0

Query: 2   GLSSMLLEAEATNRISGLKLARRCPIISHLFFADDSLFFFRAKKSETRSVQEILGSYERA 61
           GL S++ +AE +  I G+ L    P +SHLFFADDSL F RA   E  S+ EIL  YE A
Sbjct: 629 GLHSLIQQAEISGTIKGVSLCSTGPKVSHLFFADDSLLFCRANSQEASSIMEILKQYEEA 688

Query: 62  SGQTINFDKSVISFSPCTVPSVQEDIGQILQVQITASHNQYLGLPSFMPKNRTSTLKFVK 121
           SGQ IN +K+ + FSP T P VQE+I  +L V  T ++ +YLGLPSF+ + +  +  +++
Sbjct: 689 SGQQINREKTQLFFSPNTDPHVQEEIKTLLGVATTTNYEKYLGLPSFVGRGKKQSFGYIR 748

Query: 122 ERVWKQIQGWKGKLFSVGG 141
           ER+W ++QGWK +L S GG
Sbjct: 749 ERIWHKMQGWKERLLSQGG 767

BLAST of Lag0035638 vs. NCBI nr
Match: XP_023901742.1 (uncharacterized protein LOC112013579 [Quercus suber])

HSP 1 Score: 136.7 bits (343), Expect = 1.7e-28
Identity = 67/139 (48.20%), Postives = 93/139 (66.91%), Query Frame = 0

Query: 2   GLSSMLLEAEATNRISGLKLARRCPIISHLFFADDSLFFFRAKKSETRSVQEILGSYERA 61
           GLS+++ EA    +I+G+ + R CP+I+HLFFADDSL F +AK+ E  ++  IL  YE A
Sbjct: 499 GLSALIHEAARNQQINGISICRGCPLITHLFFADDSLLFCKAKEQECHALVSILNRYEEA 558

Query: 62  SGQTINFDKSVISFSPCTVPSVQEDIGQILQVQITASHNQYLGLPSFMPKNRTSTLKFVK 121
           SGQ IN DKS + FSP T   ++E I  IL     + H++YLGLPS + K++      VK
Sbjct: 559 SGQKINTDKSSVFFSPNTSQELRESIFNILGPMQDSRHSKYLGLPSIIGKSKAQVFAEVK 618

Query: 122 ERVWKQIQGWKGKLFSVGG 141
           +RV K++ GWKGKL S+GG
Sbjct: 619 DRVAKKLAGWKGKLLSIGG 637

BLAST of Lag0035638 vs. NCBI nr
Match: XP_023924111.1 (uncharacterized protein LOC112035525 [Quercus suber])

HSP 1 Score: 136.3 bits (342), Expect = 2.2e-28
Identity = 66/139 (47.48%), Postives = 91/139 (65.47%), Query Frame = 0

Query: 2   GLSSMLLEAEATNRISGLKLARRCPIISHLFFADDSLFFFRAKKSETRSVQEILGSYERA 61
           G S+++ EA    +I+G+ + R CP+I+HLFFADDSL F +AK  E  ++  IL  YE  
Sbjct: 150 GFSALIHEAARNQQINGISICRGCPLITHLFFADDSLLFCKAKVQECHALVNILNKYEET 209

Query: 62  SGQTINFDKSVISFSPCTVPSVQEDIGQILQVQITASHNQYLGLPSFMPKNRTSTLKFVK 121
           SGQ IN DKS + FSP T   ++E I  IL     + HN+YLGLPS + K++T     +K
Sbjct: 210 SGQKINTDKSSVFFSPYTPQDLRESILNILAPMQDSRHNKYLGLPSIIGKSKTQVFAEIK 269

Query: 122 ERVWKQIQGWKGKLFSVGG 141
           +RV K++ GWKGKL S+GG
Sbjct: 270 DRVAKKLVGWKGKLLSIGG 288

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_021621434.12.6e-2949.26uncharacterized protein LOC110621459 [Manihot esculenta][more]
XP_030946812.15.8e-2947.48uncharacterized protein LOC115971195 [Quercus lobata][more]
XP_030939975.19.8e-2947.48uncharacterized protein LOC115964883 [Quercus lobata][more]
XP_023901742.11.7e-2848.20uncharacterized protein LOC112013579 [Quercus suber][more]
XP_023924111.12.2e-2847.48uncharacterized protein LOC112035525 [Quercus suber][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 3..140
NoneNo IPR availablePANTHERPTHR33116:SF45SUBFAMILY NOT NAMEDcoord: 3..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0035638.1Lag0035638.1mRNA