Lag0035613 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0035613
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionsec-independent protein translocase protein TATA, chloroplastic
Locationchr3: 25387999 .. 25389200 (+)
RNA-Seq ExpressionLag0035613
SyntenyLag0035613
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACAGCCCAGAGTACTTTTCACTCAAAATCATGATGTATGTGAGTAATATAAAAGTATTCTAGAAATACTGAAACACACCTAAGAATACTTTGCTGTAGAGTGTTTTTGGCCTACATGTGAGGAATTACTCCAAAAGTACTTTTAGGAATGCAAAACCAAATATCAAAGTGATTTGTTACTGAGCATTTTTTTGTTATTAAGCATTTTCTATTGAAGTGCTTATAATAAAGTTACTTTTGCTGATGGTACTTTTTAAAACCACTCCCAAATGCACTTTTAGAGCATTTGTTAGTTTTAGAGTTGGAGAAAGTTTAAGTGAAACAAGGATAAACTAGCTTCCAGTTCATTGTAGATCAGTCATGGATGGATTGGTCGTATTTCTATGAAAGCATTGCTCTAAAATCTAAATTATACATACCCTGAAATCTGCTACATAGCATTTCGTTGATGAAACATGTTTTCAATTTTTTTTAATCGAATTGTCAAGCCTAAGAGAAACTTCAATGGCTCAATTTGTTAAAGAATCCGCAAAACAAATTTAGCTGCTTTTGACTTTCGTGGTAGGACTCATGTTTCTAATAATGTTGCAGGCGGCTAAGGAGTTTGAGTCCGAGCTGAAGAAAGAGCCCGAGTCAATCGGAGAGAATGCAGTAGAAAAGCCTACATCAGTAGATGAGGAGGAGAGGAAAGATTTGAAGGTATCAAACCAAAAGGAGAGTGTATGAAGCGGTAGGTAGTACCATCCTTTCATGTCAACATTTTCTTATCATTGTACTTAATGTGTGAATCCGTTATTGGAATCTGAATATCACTTGATGAAGAAAATTAGTTTTCCAGTGCTGGATTCTGATAGATATCATATACCACTTCAATTAGATCAAAAGGAAATATGAGCTCTGAGCTCAAGAACAAGAGGCGAGGCCGATTCGAGAAAACAGCTTCTCTCCATACTAACAAATCAATATCTGTTTCCCTCCCCTTCACTCGTTTCCCCTTGCGTATTCATGCACCACACTAAAATTATAACCAACTGTCCATATTACAGGATCTCTTTTACCCTTCATTTCTTATGTTTTCACTACTGGGGCGAATTTCATTTGAGATACTGCAGGTTCATGATCAATGTTTTAAAAGGCTAAAGGCGCGCTCGAGCCTTTTCTTCTCGAAGAGGCGAGACGCAAGCCTCGAGGTGGTGTGA

mRNA sequence

ATGCACAGCCCAGAGTACTTTTCACTCAAAATCATGATGTATGCGGCTAAGGAGTTTGAGTCCGAGCTGAAGAAAGAGCCCGAGTCAATCGGAGAGAATGCAGTAGAAAAGCCTACATCAGTAGATGAGGAGGAGAGGAAAGATTTGAAGGATCTCTTTTACCCTTCATTTCTTATGTTTTCACTACTGGGGCGAATTTCATTTGAGATACTGCAGGTTCATGATCAATGTTTTAAAAGGCTAAAGGCGCGCTCGAGCCTTTTCTTCTCGAAGAGGCGAGACGCAAGCCTCGAGGTGGTGTGA

Coding sequence (CDS)

ATGCACAGCCCAGAGTACTTTTCACTCAAAATCATGATGTATGCGGCTAAGGAGTTTGAGTCCGAGCTGAAGAAAGAGCCCGAGTCAATCGGAGAGAATGCAGTAGAAAAGCCTACATCAGTAGATGAGGAGGAGAGGAAAGATTTGAAGGATCTCTTTTACCCTTCATTTCTTATGTTTTCACTACTGGGGCGAATTTCATTTGAGATACTGCAGGTTCATGATCAATGTTTTAAAAGGCTAAAGGCGCGCTCGAGCCTTTTCTTCTCGAAGAGGCGAGACGCAAGCCTCGAGGTGGTGTGA

Protein sequence

MHSPEYFSLKIMMYAAKEFESELKKEPESIGENAVEKPTSVDEEERKDLKDLFYPSFLMFSLLGRISFEILQVHDQCFKRLKARSSLFFSKRRDASLEVV
Homology
[Close]
BLAST of Lag0035613 vs. NCBI nr
Match: KAG6588320.1 (Sec-independent protein translocase protein TATA, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-07
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 8   SLKIMMYAAKEFESELKKEPESIGENAVEKPTSVDEEERKDLK 51
           ++K    AAKEFESELKKEPESIGE AVEKPTSVD+EE++DLK
Sbjct: 107 TVKSFQQAAKEFESELKKEPESIGETAVEKPTSVDDEEKQDLK 149

[Close]
BLAST of Lag0035613 vs. NCBI nr
Match: XP_023529222.1 (sec-independent protein translocase protein TATA, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-07
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 8   SLKIMMYAAKEFESELKKEPESIGENAVEKPTSVDEEERKDLK 51
           ++K    AAKEFESELKKEPESIGE AVEKPTSVD+EE++DLK
Sbjct: 107 TVKSFQQAAKEFESELKKEPESIGETAVEKPTSVDDEEKQDLK 149

[Close]
BLAST of Lag0035613 vs. NCBI nr
Match: XP_022969040.1 (sec-independent protein translocase protein TATA, chloroplastic [Cucurbita maxima])

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-07
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 8   SLKIMMYAAKEFESELKKEPESIGENAVEKPTSVDEEERKDLK 51
           ++K    AAKEFESELKKEPESIGE AVEKPTSVD+EE++DLK
Sbjct: 107 TVKSFQQAAKEFESELKKEPESIGETAVEKPTSVDDEEKQDLK 149

[Close]
BLAST of Lag0035613 vs. NCBI nr
Match: KAG7020882.1 (Sec-independent protein translocase protein TATA, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-07
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 8   SLKIMMYAAKEFESELKKEPESIGENAVEKPTSVDEEERKDLK 51
           ++K    AAKEFESELKKEPESIGE AVEKPTSVD+EE++DLK
Sbjct: 107 TVKSFQQAAKEFESELKKEPESIGETAVEKPTSVDDEEKQDLK 149

[Close]
BLAST of Lag0035613 vs. NCBI nr
Match: XP_022932561.1 (sec-independent protein translocase protein TATA, chloroplastic [Cucurbita moschata])

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 8   SLKIMMYAAKEFESELKKEPESIGENAVEKPTSVDEEERKDLK 51
           ++K    AAKEFESELKKEPESIGE AVEKP S+D+EE++DLK
Sbjct: 107 TVKSFQQAAKEFESELKKEPESIGETAVEKPASIDDEEKQDLK 149

The following BLAST results are available for this feature:
BLAST of Lag0035613 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6588320.13.0e-0776.74Sec-independent protein translocase protein TATA, chloroplastic, partial [Cucurb... [more]
XP_023529222.13.0e-0776.74sec-independent protein translocase protein TATA, chloroplastic [Cucurbita pepo ... [more]
XP_022969040.13.0e-0776.74sec-independent protein translocase protein TATA, chloroplastic [Cucurbita maxim... [more]
KAG7020882.13.0e-0776.74Sec-independent protein translocase protein TATA, chloroplastic, partial [Cucurb... [more]
XP_022932561.11.5e-0672.09sec-independent protein translocase protein TATA, chloroplastic [Cucurbita mosch... [more]
BLAST of Lag0035613 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0035613.1Lag0035613.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016043 cellular component organization
biological_process GO:0006886 intracellular protein transport
biological_process GO:0043953 protein transport by the Tat complex
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane