Lag0035607 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0035607
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr3: 25248463 .. 25250233 (+)
RNA-Seq ExpressionLag0035607
SyntenyLag0035607
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTTGTAGAGCCAACAAGTTTTGATGGAGTCATGAAGTTCGATGGGAAAAATTTTGGATATTGGAAGATGCAAGTCAAGGATTGTTTAAGTTGCAAGAAAGTGCATAAGTCATTGAAGGAGAGGCCGAAAGAGATGTCGGACGAAGATTGGGAAGCTCTAGATGAAGAGGCAATTGCAACCATAAGGATGTGTTTGTCAATGGATGTGGCAAGTCTAGTAGCCCATGAGACAACTGCAGTCAAGTTGATGGAAGCGCTTACAAACAGGTATGAAAAACCCTCTACAAATAATAAGGTCTACCTAGTTAAGAAGCTTTTCAACATGCAAATGTCTGAGGATGCTTCTGTGAATTTCTATATCAATGAGGTTACCACTTTGATTAATCAGTTAAAATCTGTTAAGATAGAGTTTTCTGATGAGGTGAATGTTATTCCGTTGTTAACGTTTTTACCTGATAGTTGGGAAACGATGAAGACAGCAGTGTCTAATTCGACTGGAAATAACACTTTAAAATTTTCAGAAGTTTGTGATTTAGCCATAGCTGAGGAAATTCGTAGGCAGGGTAGTAATAAAGAGTCTACAGTAGGGCCAGCTTTGGTTATGACTAAAGGTAAAGATAAGGTTGATGAAGATAATGAACCGAGTAGCAGTAGGAAAAAGTGAAAAAGTAGGAATGAGGTAGAATGTTATTACTGCCATAAGAAAGGTCACTTCAAGTATCAGTGTAGGAAATTTAAAGAGGATCAGAAAAGAAAACCCGAGGCAAATATAGTGGAGGAGGTTGTCTTAGCTTGTGTTGAGAGTGACACAAAGTATAATAACCACTCATCAGATTGGATATTAGACAGTGCAGCTTCTGTTCACATAGCTTCAGATAGGAGTTTGTTCACATCATTCACAGGAGGGCATCATGGCCTAGTGAGGATGGGGAATGGTAGAACCTCCAAGACTAGAGGGATTGGAGATGTTAGTCTGAAGACAGAATGTGGAGGTAAATTGGTACTGCGAGATGTTAGGTACGTGCCTAATATCAAGATGAATCTTATTTCTATTGGTAAGTTGGCAGATGATGGTTACATGTGTGAGTTTGGTAGTCGCCAGTGTAAACTCAAGTTCAGATCCCAGGTAGTGGCAGTTGGTCACACGAAATCTACACTGTACATATGTCAGTTGAATGTTGCCAAAGGTTCAAAGAAACAGTGGATGTCGGTTAAAGCTGCAGATGGTAGTTGTAGAGGTACAGTTCAGCCAGCAGCAAGGATAGCCAATTTCGATCAGTCTGATCAAGATCCTTCAGTTCAGAAACAATTGGGAAGTCTAGGAGAGAAAGTTGATGACTATCGTGAATCCCCAATTGTCAGACGTTCGAATGAATGGAAGAAGTCGCCTAGGCGAGTTGAGGCATCAAAGTGGAAGGCCAGAGCAATTGCTAAGGTCAAAGGTTAGGTCTCTAGCTTGGTAACAGGTTTGAATAGAGGATTCAAGCCATTCTCAGAGTGTATCTTCTTCAGGAACAGTTGTTTGGGTTGGAAGAAGATGACAGGTGACACCACTTAGTTGAAGTGGGAATACGTGTCTGTCTTTTTCGTCTAGGAGACAGGTTCACGTATCTAGCCCATACCTCGGGGCGAGCACAGATGAGCTACAGTTATATTCTGATAGTTGCCTATTTTTGTGAGTTTGTTGTTTTTCAGGTATTTTGAGCCTTCGAGTTTTACCAAGAACATCAGAGATAACAGTTGTGATGACAGGTGACACCACTTAG

mRNA sequence

ATGGGTTTTGTAGAGCCAACAAGTTTTGATGGAGTCATGAAGTTCGATGGGAAAAATTTTGGATATTGGAAGATGCAAGTCAAGGATTGTTTAAGTTGCAAGAAAGTGCATAAGTCATTGAAGGAGAGGCCGAAAGAGATGTCGGACGAAGATTGGGAAGCTCTAGATGAAGAGGCAATTGCAACCATAAGGATGTGTTTGTCAATGGATGTGGCAAGTCTAGTAGCCCATGAGACAACTGCAGTCAAGTTGATGGAAGCGCTTACAAACAGGTATGAAAAACCCTCTACAAATAATAAGGTCTACCTAGTTAAGAAGCTTTTCAACATGCAAATGTCTGAGGATGCTTCTGTGAATTTCTATATCAATGAGGTTACCACTTTGATTAATCAGTTAAAATCTGTTAAGATAGAGTTTTCTGATGAGGTGAATGTTATTCCGTTGTTAACGTTTTTACCTGATAGTTGGGAAACGATGAAGACAGCAGTGTCTAATTCGACTGGAAATAACACTTTAAAATTTTCAGAAGTTTGTGATTTAGCCATAGCTGAGGAAATTCGTAGGCAGGGTAGTAATAAAGAGTCTACAGTAGGGCCAGCTTTGGTTATGACTAAAGGTCACTTCAAGTATCAGTGTAGGAAATTTAAAGAGGATCAGAAAAGAAAACCCGAGGCAAATATAGTGGAGGAGGTTGTCTTAGCTTGTGTTGAGAGTGACACAAAGTATAATAACCACTCATCAGATTGGATATTAGACAGTGCAGCTTCTGTTCACATAGCTTCAGATAGGAGTTTGTTCACATCATTCACAGGAGGGCATCATGGCCTAGTGAGGATGGGGAATGGTAGAACCTCCAAGACTAGAGGGATTGGAGATGTTAGTCTGAAGACAGAATGTGGAGGTAAATTGGTACTGCGAGATGTTAGGTACGTGCCTAATATCAAGATGAATCTTATTTCTATTGGTAAGTTGGCAGATGATGGTTACATGTGTGAGTTTGGTAGTCGCCAGTGTAAACTCAAGTTCAGATCCCAGGTAGTGGCAGTTGGTCACACGAAATCTACACTGTACATATGTCAGTTGAATGTTGCCAAAGGTTCAAAGAAACAGTGGATGTCGGTTAAAGCTGCAGATGGTAGTTGTAGAGGTACAGTTCAGCCAGCAGCAAGGATAGCCAATTTCGATCAGTCTGATCAAGATCCTTCAGTTCAGAAACAATTGGGAAGTCTAGGAGAGAAAGTTGATGACTATCGTGAATCCCCAATTGTCAGACGTTCGAATGAATGGAAGAAGTCGCCTAGGCGAGTTGAGGCATCAAAGTGGAAGGCCAGAGCAATTGCTAAGGTCAAAGGTATTTTGAGCCTTCGAGTTTTACCAAGAACATCAGAGATAACAGTTGTGATGACAGGTGACACCACTTAG

Coding sequence (CDS)

ATGGGTTTTGTAGAGCCAACAAGTTTTGATGGAGTCATGAAGTTCGATGGGAAAAATTTTGGATATTGGAAGATGCAAGTCAAGGATTGTTTAAGTTGCAAGAAAGTGCATAAGTCATTGAAGGAGAGGCCGAAAGAGATGTCGGACGAAGATTGGGAAGCTCTAGATGAAGAGGCAATTGCAACCATAAGGATGTGTTTGTCAATGGATGTGGCAAGTCTAGTAGCCCATGAGACAACTGCAGTCAAGTTGATGGAAGCGCTTACAAACAGGTATGAAAAACCCTCTACAAATAATAAGGTCTACCTAGTTAAGAAGCTTTTCAACATGCAAATGTCTGAGGATGCTTCTGTGAATTTCTATATCAATGAGGTTACCACTTTGATTAATCAGTTAAAATCTGTTAAGATAGAGTTTTCTGATGAGGTGAATGTTATTCCGTTGTTAACGTTTTTACCTGATAGTTGGGAAACGATGAAGACAGCAGTGTCTAATTCGACTGGAAATAACACTTTAAAATTTTCAGAAGTTTGTGATTTAGCCATAGCTGAGGAAATTCGTAGGCAGGGTAGTAATAAAGAGTCTACAGTAGGGCCAGCTTTGGTTATGACTAAAGGTCACTTCAAGTATCAGTGTAGGAAATTTAAAGAGGATCAGAAAAGAAAACCCGAGGCAAATATAGTGGAGGAGGTTGTCTTAGCTTGTGTTGAGAGTGACACAAAGTATAATAACCACTCATCAGATTGGATATTAGACAGTGCAGCTTCTGTTCACATAGCTTCAGATAGGAGTTTGTTCACATCATTCACAGGAGGGCATCATGGCCTAGTGAGGATGGGGAATGGTAGAACCTCCAAGACTAGAGGGATTGGAGATGTTAGTCTGAAGACAGAATGTGGAGGTAAATTGGTACTGCGAGATGTTAGGTACGTGCCTAATATCAAGATGAATCTTATTTCTATTGGTAAGTTGGCAGATGATGGTTACATGTGTGAGTTTGGTAGTCGCCAGTGTAAACTCAAGTTCAGATCCCAGGTAGTGGCAGTTGGTCACACGAAATCTACACTGTACATATGTCAGTTGAATGTTGCCAAAGGTTCAAAGAAACAGTGGATGTCGGTTAAAGCTGCAGATGGTAGTTGTAGAGGTACAGTTCAGCCAGCAGCAAGGATAGCCAATTTCGATCAGTCTGATCAAGATCCTTCAGTTCAGAAACAATTGGGAAGTCTAGGAGAGAAAGTTGATGACTATCGTGAATCCCCAATTGTCAGACGTTCGAATGAATGGAAGAAGTCGCCTAGGCGAGTTGAGGCATCAAAGTGGAAGGCCAGAGCAATTGCTAAGGTCAAAGGTATTTTGAGCCTTCGAGTTTTACCAAGAACATCAGAGATAACAGTTGTGATGACAGGTGACACCACTTAG

Protein sequence

MGFVEPTSFDGVMKFDGKNFGYWKMQVKDCLSCKKVHKSLKERPKEMSDEDWEALDEEAIATIRMCLSMDVASLVAHETTAVKLMEALTNRYEKPSTNNKVYLVKKLFNMQMSEDASVNFYINEVTTLINQLKSVKIEFSDEVNVIPLLTFLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGPALVMTKGHFKYQCRKFKEDQKRKPEANIVEEVVLACVESDTKYNNHSSDWILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRYVPNIKMNLISIGKLADDGYMCEFGSRQCKLKFRSQVVAVGHTKSTLYICQLNVAKGSKKQWMSVKAADGSCRGTVQPAARIANFDQSDQDPSVQKQLGSLGEKVDDYRESPIVRRSNEWKKSPRRVEASKWKARAIAKVKGILSLRVLPRTSEITVVMTGDTT
Homology
BLAST of Lag0035607 vs. NCBI nr
Match: RVW73393.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 263.5 bits (672), Expect = 3.6e-66
Identity = 145/355 (40.85%), Postives = 214/355 (60.28%), Query Frame = 0

Query: 11  GVMKFDGKNFGYWKMQVKDCLSCKKVH-KSLKERPKEMSDEDWEALDEEAIATIRMCLSM 70
           G+ KFDG +F YW+MQ++D L  +K+H   L  +P+ M  E+W  LD + +  IR+ LS 
Sbjct: 10  GIEKFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSR 69

Query: 71  DVASLVAHETTAVKLMEALTNRYEKPSTNNKVYLVKKLFNMQMSEDASVNFYINEVTTLI 130
            VA  V  E T   LM+AL+  YEKPS NNKV+L+KKLFN++M+E+ASV  ++NE  T+ 
Sbjct: 70  SVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTIT 129

Query: 131 NQLKSVKIEFSDEVNVIPLLTFLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQ 190
           NQL SV+I+F DE+  + +L  LP+SWE M+ AVSNSTG   LK++++ DL +AEEIRR+
Sbjct: 130 NQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRR 189

Query: 191 GSNKESTVGPALVMT---KGHFKYQC---RKFKEDQKRKPEANIVEEVVLACVESDTKYN 250
            + + S  G AL +    +GHFK QC   +K  ED         V++ +L  V+S     
Sbjct: 190 DAGETSGSGSALNLETRGRGHFKRQCKSPKKKNEDDSANAVTEEVQDALLLAVDSPL--- 249

Query: 251 NHSSDWILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKL 310
               DW+LDS AS H    R +  ++  G  G V + +G      G+GDV +    G   
Sbjct: 250 ---DDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVW 309

Query: 311 VLRDVRYVPNIKMNLISIGKLADDGYMCEFGSRQCKLKFRSQVVAVGHTKSTLYI 359
           +L  VR++P+++ NLIS+G+L D+G+   F     K+   ++V+A G    TLY+
Sbjct: 310 LLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYM 358

BLAST of Lag0035607 vs. NCBI nr
Match: RVW17810.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 263.5 bits (672), Expect = 3.6e-66
Identity = 145/355 (40.85%), Postives = 214/355 (60.28%), Query Frame = 0

Query: 11  GVMKFDGKNFGYWKMQVKDCLSCKKVH-KSLKERPKEMSDEDWEALDEEAIATIRMCLSM 70
           G+ KFDG +F YW+MQ++D L  +K+H   L  +P+ M  E+W  LD + +  IR+ LS 
Sbjct: 10  GIEKFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSR 69

Query: 71  DVASLVAHETTAVKLMEALTNRYEKPSTNNKVYLVKKLFNMQMSEDASVNFYINEVTTLI 130
            VA  V  E T   LM+AL+  YEKPS NNKV+L+KKLFN++M+E+ASV  ++NE  T+ 
Sbjct: 70  SVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTIT 129

Query: 131 NQLKSVKIEFSDEVNVIPLLTFLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQ 190
           NQL SV+I+F DE+  + +L  LP+SWE M+ AVSNSTG   LK++++ DL +AEEIRR+
Sbjct: 130 NQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRR 189

Query: 191 GSNKESTVGPALVMT---KGHFKYQC---RKFKEDQKRKPEANIVEEVVLACVESDTKYN 250
            + + S  G AL +    +GHFK QC   +K  ED         V++ +L  V+S     
Sbjct: 190 DAGETSGSGSALNLETRGRGHFKRQCKSPKKKNEDDSANAVTEEVQDALLLAVDSPL--- 249

Query: 251 NHSSDWILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKL 310
               DW+LDS AS H    R +  ++  G  G V + +G      G+GDV +    G   
Sbjct: 250 ---DDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVW 309

Query: 311 VLRDVRYVPNIKMNLISIGKLADDGYMCEFGSRQCKLKFRSQVVAVGHTKSTLYI 359
           +L  VR++P+++ NLIS+G+L D+G+   F     K+   ++V+A G    TLY+
Sbjct: 310 LLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYM 358

BLAST of Lag0035607 vs. NCBI nr
Match: RVW62119.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 262.7 bits (670), Expect = 6.1e-66
Identity = 145/355 (40.85%), Postives = 213/355 (60.00%), Query Frame = 0

Query: 11  GVMKFDGKNFGYWKMQVKDCLSCKKVH-KSLKERPKEMSDEDWEALDEEAIATIRMCLSM 70
           G+ KFDG +F YW+MQ++D L  +K+H   L  +P+ M  E+W  LD + +  IR+ LS 
Sbjct: 10  GIEKFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSR 69

Query: 71  DVASLVAHETTAVKLMEALTNRYEKPSTNNKVYLVKKLFNMQMSEDASVNFYINEVTTLI 130
            VA  V  E T   LM+AL+  YEKPS NNKV+L+KKLFN++M+E+ASV  ++NE  T+ 
Sbjct: 70  SVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTIT 129

Query: 131 NQLKSVKIEFSDEVNVIPLLTFLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQ 190
           NQL SV+I+F DE+  + +L  LP+SWE M+ AVSNSTG   LK++++ DL +AEEIRR+
Sbjct: 130 NQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRR 189

Query: 191 GSNKESTVGPALVMT---KGHFKYQC---RKFKEDQKRKPEANIVEEVVLACVESDTKYN 250
            + + S  G AL +    +GHFK QC   +K  ED         V + +L  V+S     
Sbjct: 190 DAGETSGSGSALNLETRGRGHFKRQCKSPKKKNEDDSANAVTEEVHDALLLAVDSPL--- 249

Query: 251 NHSSDWILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKL 310
               DW+LDS AS H    R +  ++  G  G V + +G      G+GDV +    G   
Sbjct: 250 ---DDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVW 309

Query: 311 VLRDVRYVPNIKMNLISIGKLADDGYMCEFGSRQCKLKFRSQVVAVGHTKSTLYI 359
           +L  VR++P+++ NLIS+G+L D+G+   F     K+   ++V+A G    TLY+
Sbjct: 310 LLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYM 358

BLAST of Lag0035607 vs. NCBI nr
Match: CAN74198.1 (hypothetical protein VITISV_005765 [Vitis vinifera])

HSP 1 Score: 262.3 bits (669), Expect = 8.0e-66
Identity = 144/355 (40.56%), Postives = 213/355 (60.00%), Query Frame = 0

Query: 11  GVMKFDGKNFGYWKMQVKDCLSCKKVH-KSLKERPKEMSDEDWEALDEEAIATIRMCLSM 70
           G+ KFDG +F YW++Q++D L  +K+H   L  +P+ M  E+W  LD + +  IR+ LS 
Sbjct: 10  GIEKFDGTDFAYWRIQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSR 69

Query: 71  DVASLVAHETTAVKLMEALTNRYEKPSTNNKVYLVKKLFNMQMSEDASVNFYINEVTTLI 130
            VA  V  E T   LM+ L+  YEKPS NNKV+L+KKLFN++M+E+ASV  ++NE  T+ 
Sbjct: 70  SVAHNVVKEKTTTDLMKVLSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTIT 129

Query: 131 NQLKSVKIEFSDEVNVIPLLTFLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQ 190
           NQL SV+I+F DE+  + +L  LP+SWE M+ AVSNSTG   LK++++ DL +AEEIRR+
Sbjct: 130 NQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIQDLILAEEIRRR 189

Query: 191 GSNKESTVGPALVMT---KGHFKYQC---RKFKEDQKRKPEANIVEEVVLACVESDTKYN 250
            + + S  G AL +    +GHFK QC   +K  ED         V++ +L  V+S     
Sbjct: 190 DAGETSGSGSALNLETRGRGHFKRQCKSPKKKNEDDSANXVTEEVQDALLLAVDSPL--- 249

Query: 251 NHSSDWILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKL 310
               DW+LDS AS H    R +  ++  G  G V + +G      G+GDV +    G   
Sbjct: 250 ---DDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVW 309

Query: 311 VLRDVRYVPNIKMNLISIGKLADDGYMCEFGSRQCKLKFRSQVVAVGHTKSTLYI 359
           +L  VRY+P+++ NLIS+G+L D+G+   F     K+   ++V+A G    TLY+
Sbjct: 310 LLEKVRYIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTDTLYM 358

BLAST of Lag0035607 vs. NCBI nr
Match: TKS02608.1 (hypothetical protein D5086_0000161380 [Populus alba])

HSP 1 Score: 261.5 bits (667), Expect = 1.4e-65
Identity = 155/408 (37.99%), Postives = 225/408 (55.15%), Query Frame = 0

Query: 11  GVMKFDGKNFGYWKMQVKDCLSCKKVH-KSLKERPKEMSDEDWEALDEEAIATIRMCLSM 70
           G+ KFDG +FGYWKMQ++D L  KK+H   L  +P++M  E+W+ LD + +  IR+ LS 
Sbjct: 9   GIEKFDGTDFGYWKMQIEDYLYGKKLHLPLLGSKPEKMEAEEWQLLDRQVLGIIRLSLSR 68

Query: 71  DVASLVAHETTAVKLMEALTNRYEKPSTNNKVYLVKKLFNMQMSEDASVNFYINEVTTLI 130
            VA  V  E +  KLMEAL+  YEKPS NNKV+L+KKLFN++M E+ SV  ++N   T+ 
Sbjct: 69  RVAHNVTKEKSTAKLMEALSGMYEKPSANNKVHLMKKLFNLKMVENTSVTQHLNNFNTIT 128

Query: 131 NQLKSVKIEFSDEVNVIPLLTFLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQ 190
           NQL SV+IEF DE+  + LL  LP SWE M+TAVSNS G + LK+ ++ DL +AEE+RR+
Sbjct: 129 NQLSSVEIEFDDEIRALILLASLPSSWEGMRTAVSNSAGKSKLKYDDIRDLILAEEVRRK 188

Query: 191 GSNKESTVGPALVMT--------------------------------------KGHFKYQ 250
            S + S+ G AL +                                        GHF   
Sbjct: 189 DSGESSSSGSALNINTRGRRHDRGSSRGRSKSRYRSKSKFGSRKQVECWNCGKPGHFSRN 248

Query: 251 CRKFKEDQKRKPEANI--VEEVVLACVESDTKYNNHSSDWILDSAASVHIASDRSLFTSF 310
           C K K+ +     A    V++ ++  V+S         +WILDS AS H      +  ++
Sbjct: 249 CTKPKKPEADSANATTDEVQDALILVVQSQI------DEWILDSGASFHCTPHNEMLQNY 308

Query: 311 TGGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRYVPNIKMNLISIGKLADDGY 370
            GG HG+V + +G   K  GIGDV +KT  G    L++VR+VP +K  LIS+G+L D G+
Sbjct: 309 VGGDHGVVYLADGTPLKIVGIGDVQIKTMNGSIWTLQNVRHVPELKKKLISVGQLDDSGH 368

Query: 371 MCEFGSRQCKLKFRSQVVAVGHTKSTLYIC--QLNVAKGSKKQWMSVK 376
              F     K+   + V+A G    TL     +L V++ ++ +W ++K
Sbjct: 369 SILFAGGMWKVSKGAMVLARGKKTGTLKFSDPELQVSR-NEDEWANIK 409

BLAST of Lag0035607 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.4e-41
Identity = 131/410 (31.95%), Postives = 200/410 (48.78%), Query Frame = 0

Query: 12  VMKFDGKN-FGYWKMQVKDCLSCKKVHKSL---KERPKEMSDEDWEALDEEAIATIRMCL 71
           V KF+G N F  W+ +++D L  + +HK L    ++P  M  EDW  LDE A + IR+ L
Sbjct: 8   VAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIRLHL 67

Query: 72  SMDVASLVAHETTAVKLMEALTNRYEKPSTNNKVYLVKKLFNMQMSEDASVNFYINEVTT 131
           S DV + +  E TA  +   L + Y   +  NK+YL K+L+ + MSE  +   ++N    
Sbjct: 68  SDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNG 127

Query: 132 LINQLKSVKIEFSDEVNVIPLLTFLPDSWETMKTAVSNSTGNNTLKFSEVCD-LAIAEEI 191
           LI QL ++ ++  +E   I LL  LP S++ + T + +  G  T++  +V   L + E++
Sbjct: 128 LITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILH--GKTTIELKDVTSALLLNEKM 187

Query: 192 RRQGSNKESTVGPALVM--------------------------------------TKGHF 251
           R++  N+    G AL+                                         GHF
Sbjct: 188 RKKPENQ----GQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGHF 247

Query: 252 KYQC---RKFK-EDQKRKPEANIV------EEVVLACVESD--TKYNNHSSDWILDSAAS 311
           K  C   RK K E   +K + N        + VVL   E +     +   S+W++D+AAS
Sbjct: 248 KRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWVVDTAAS 307

Query: 312 VHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRYVPNIKM 367
            H    R LF  +  G  G V+MGN   SK  GIGD+ +KT  G  LVL+DVR+VP+++M
Sbjct: 308 HHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRM 367

BLAST of Lag0035607 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.5e-06
Identity = 44/118 (37.29%), Postives = 62/118 (52.54%), Query Frame = 0

Query: 246 SSDWILDSAASVHIASD---RSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECGGK 305
           S++W+LDS A+ HI SD    SL   +TGG    V + +G T      G  SL T+    
Sbjct: 328 SNNWLLDSGATHHITSDFNNLSLHQPYTGGDD--VMVADGSTIPISHTGSTSLSTK-SRP 387

Query: 306 LVLRDVRYVPNIKMNLISIGKLAD-DGYMCEFGSRQCKLKFRSQVVAV--GHTKSTLY 358
           L L ++ YVPNI  NLIS+ +L + +G   EF     ++K  +  V +  G TK  LY
Sbjct: 388 LNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELY 442

BLAST of Lag0035607 vs. ExPASy Swiss-Prot
Match: P25601 (Putative transposon Ty5-1 protein YCL075W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5B PE=5 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.6e-06
Identity = 32/87 (36.78%), Postives = 47/87 (54.02%), Query Frame = 0

Query: 235 CVESDTKYNNHSSDWILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVS 294
           C+ S T     SS+WI D+  + H+  DRS+F+SFT         G G +    G G V+
Sbjct: 65  CMLSSTVPATKSSEWIFDTGCTSHMCHDRSIFSSFTRSSRKDFVRGVGGSIPIMGSGTVN 124

Query: 295 LKTECGGKLVLRDVRYVPNIKMNLISI 322
           +     G + L DV YVP++ +NLIS+
Sbjct: 125 I-----GTVQLHDVSYVPDLPVNLISV 146

BLAST of Lag0035607 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 8.2e-05
Identity = 42/119 (35.29%), Postives = 59/119 (49.58%), Query Frame = 0

Query: 245 HSSDWILDSAASVHIASD---RSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECGG 304
           ++++W+LDS A+ HI SD    S    +TGG    V + +G T      G  SL T    
Sbjct: 306 NANNWLLDSGATHHITSDFNNLSFHQPYTGGDD--VMIADGSTIPITHTGSASLPTS-SR 365

Query: 305 KLVLRDVRYVPNIKMNLISIGKLADDGYM-CEFGSRQCKLKFRSQVVAV--GHTKSTLY 358
            L L  V YVPNI  NLIS+ +L +   +  EF     ++K  +  V +  G TK  LY
Sbjct: 366 SLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELY 421

BLAST of Lag0035607 vs. ExPASy TrEMBL
Match: A0A2N9GZ72 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35439 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.1e-67
Identity = 155/385 (40.26%), Postives = 235/385 (61.04%), Query Frame = 0

Query: 11  GVMKFDGKNFGYWKMQVKDCLSCKKVH-KSLKERPKEMSDEDWEALDEEAIATIRMCLSM 70
           G+ KFDG +FGYWKMQ++D L  KK+H   L ++P +M D +W  LD + +  IR+ LS 
Sbjct: 10  GIEKFDGTDFGYWKMQIEDYLYGKKLHLPLLGKKPNKMEDAEWALLDRQVLGVIRLTLSR 69

Query: 71  DVASLVAHETTAVKLMEALTNRYEKPSTNNKVYLVKKLFNMQMSEDASVNFYINEVTTLI 130
            +A  V  ETT V LM AL+  YEKPS NNKV+L+KKLFN++M+E A+V  ++NE  T+ 
Sbjct: 70  SIAHNVVKETTTVGLMTALSGMYEKPSANNKVHLMKKLFNLKMAEGAAVAKHLNEFNTIT 129

Query: 131 NQLKSVKIEFSDEVNVIPLLTFLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQ 190
           NQL SV+IEF DE+  + +L  LP+SWE M+ AVSNS G   LK+ ++ DL ++EE+RR+
Sbjct: 130 NQLSSVEIEFDDEIRALIVLASLPNSWEAMRMAVSNSAGKGKLKYDDIRDLILSEEVRRR 189

Query: 191 GSNKESTVGPALVMTKGHFKYQCRKFKEDQKRKPEANIVEE--VVLACVESDTKY-NNHS 250
            +  ++  G A V      + + +  K D ++   A + +E  VVL+  E   ++ +N  
Sbjct: 190 DACIDNAEGQAFVT-----ENRDKDHKHDDEKGTTAVVDDEEVVVLSVQEQKCEHVDNID 249

Query: 251 SDWILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLR 310
            +W++DSAA+ H+   + LFT++  G  G V+MGN   SK  GIGDV +KT  G  ++L+
Sbjct: 250 DEWVVDSAATHHVVRTKELFTTYKAGDFGTVKMGNTSYSKIVGIGDVCIKTNVGFTVMLK 309

Query: 311 DVRYVPNIKMNLISIGKLADDGYMCEFGSRQCKLKFRSQVVAVGHTKSTLYICQLNVAKG 370
           +VR+VP++  NLIS   +   GY    G+ + KL     VVA G     LY+ ++   K 
Sbjct: 310 NVRHVPDLCFNLISTPVMDRAGYCNHLGNGRWKLAKGPMVVARGRIGCGLYMTRV---KA 369

Query: 371 SKKQWMSVKAADGSCRGTVQPAARI 392
            KK++ +V    G+ + T+Q    +
Sbjct: 370 CKKKFNAV----GTIKKTLQSRVNV 382

BLAST of Lag0035607 vs. ExPASy TrEMBL
Match: A0A438GME7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3541 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.7e-66
Identity = 145/355 (40.85%), Postives = 214/355 (60.28%), Query Frame = 0

Query: 11  GVMKFDGKNFGYWKMQVKDCLSCKKVH-KSLKERPKEMSDEDWEALDEEAIATIRMCLSM 70
           G+ KFDG +F YW+MQ++D L  +K+H   L  +P+ M  E+W  LD + +  IR+ LS 
Sbjct: 10  GIEKFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSR 69

Query: 71  DVASLVAHETTAVKLMEALTNRYEKPSTNNKVYLVKKLFNMQMSEDASVNFYINEVTTLI 130
            VA  V  E T   LM+AL+  YEKPS NNKV+L+KKLFN++M+E+ASV  ++NE  T+ 
Sbjct: 70  SVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTIT 129

Query: 131 NQLKSVKIEFSDEVNVIPLLTFLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQ 190
           NQL SV+I+F DE+  + +L  LP+SWE M+ AVSNSTG   LK++++ DL +AEEIRR+
Sbjct: 130 NQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRR 189

Query: 191 GSNKESTVGPALVMT---KGHFKYQC---RKFKEDQKRKPEANIVEEVVLACVESDTKYN 250
            + + S  G AL +    +GHFK QC   +K  ED         V++ +L  V+S     
Sbjct: 190 DAGETSGSGSALNLETRGRGHFKRQCKSPKKKNEDDSANAVTEEVQDALLLAVDSPL--- 249

Query: 251 NHSSDWILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKL 310
               DW+LDS AS H    R +  ++  G  G V + +G      G+GDV +    G   
Sbjct: 250 ---DDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVW 309

Query: 311 VLRDVRYVPNIKMNLISIGKLADDGYMCEFGSRQCKLKFRSQVVAVGHTKSTLYI 359
           +L  VR++P+++ NLIS+G+L D+G+   F     K+   ++V+A G    TLY+
Sbjct: 310 LLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYM 358

BLAST of Lag0035607 vs. ExPASy TrEMBL
Match: A0A438C3I2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2500 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.7e-66
Identity = 145/355 (40.85%), Postives = 214/355 (60.28%), Query Frame = 0

Query: 11  GVMKFDGKNFGYWKMQVKDCLSCKKVH-KSLKERPKEMSDEDWEALDEEAIATIRMCLSM 70
           G+ KFDG +F YW+MQ++D L  +K+H   L  +P+ M  E+W  LD + +  IR+ LS 
Sbjct: 10  GIEKFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSR 69

Query: 71  DVASLVAHETTAVKLMEALTNRYEKPSTNNKVYLVKKLFNMQMSEDASVNFYINEVTTLI 130
            VA  V  E T   LM+AL+  YEKPS NNKV+L+KKLFN++M+E+ASV  ++NE  T+ 
Sbjct: 70  SVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTIT 129

Query: 131 NQLKSVKIEFSDEVNVIPLLTFLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQ 190
           NQL SV+I+F DE+  + +L  LP+SWE M+ AVSNSTG   LK++++ DL +AEEIRR+
Sbjct: 130 NQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRR 189

Query: 191 GSNKESTVGPALVMT---KGHFKYQC---RKFKEDQKRKPEANIVEEVVLACVESDTKYN 250
            + + S  G AL +    +GHFK QC   +K  ED         V++ +L  V+S     
Sbjct: 190 DAGETSGSGSALNLETRGRGHFKRQCKSPKKKNEDDSANAVTEEVQDALLLAVDSPL--- 249

Query: 251 NHSSDWILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKL 310
               DW+LDS AS H    R +  ++  G  G V + +G      G+GDV +    G   
Sbjct: 250 ---DDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVW 309

Query: 311 VLRDVRYVPNIKMNLISIGKLADDGYMCEFGSRQCKLKFRSQVVAVGHTKSTLYI 359
           +L  VR++P+++ NLIS+G+L D+G+   F     K+   ++V+A G    TLY+
Sbjct: 310 LLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYM 358

BLAST of Lag0035607 vs. ExPASy TrEMBL
Match: A0A438FQ91 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3625 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.0e-66
Identity = 145/355 (40.85%), Postives = 213/355 (60.00%), Query Frame = 0

Query: 11  GVMKFDGKNFGYWKMQVKDCLSCKKVH-KSLKERPKEMSDEDWEALDEEAIATIRMCLSM 70
           G+ KFDG +F YW+MQ++D L  +K+H   L  +P+ M  E+W  LD + +  IR+ LS 
Sbjct: 10  GIEKFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSR 69

Query: 71  DVASLVAHETTAVKLMEALTNRYEKPSTNNKVYLVKKLFNMQMSEDASVNFYINEVTTLI 130
            VA  V  E T   LM+AL+  YEKPS NNKV+L+KKLFN++M+E+ASV  ++NE  T+ 
Sbjct: 70  SVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTIT 129

Query: 131 NQLKSVKIEFSDEVNVIPLLTFLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQ 190
           NQL SV+I+F DE+  + +L  LP+SWE M+ AVSNSTG   LK++++ DL +AEEIRR+
Sbjct: 130 NQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRR 189

Query: 191 GSNKESTVGPALVMT---KGHFKYQC---RKFKEDQKRKPEANIVEEVVLACVESDTKYN 250
            + + S  G AL +    +GHFK QC   +K  ED         V + +L  V+S     
Sbjct: 190 DAGETSGSGSALNLETRGRGHFKRQCKSPKKKNEDDSANAVTEEVHDALLLAVDSPL--- 249

Query: 251 NHSSDWILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKL 310
               DW+LDS AS H    R +  ++  G  G V + +G      G+GDV +    G   
Sbjct: 250 ---DDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVW 309

Query: 311 VLRDVRYVPNIKMNLISIGKLADDGYMCEFGSRQCKLKFRSQVVAVGHTKSTLYI 359
           +L  VR++P+++ NLIS+G+L D+G+   F     K+   ++V+A G    TLY+
Sbjct: 310 LLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYM 358

BLAST of Lag0035607 vs. ExPASy TrEMBL
Match: A5B5N4 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_005765 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.9e-66
Identity = 144/355 (40.56%), Postives = 213/355 (60.00%), Query Frame = 0

Query: 11  GVMKFDGKNFGYWKMQVKDCLSCKKVH-KSLKERPKEMSDEDWEALDEEAIATIRMCLSM 70
           G+ KFDG +F YW++Q++D L  +K+H   L  +P+ M  E+W  LD + +  IR+ LS 
Sbjct: 10  GIEKFDGTDFAYWRIQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSR 69

Query: 71  DVASLVAHETTAVKLMEALTNRYEKPSTNNKVYLVKKLFNMQMSEDASVNFYINEVTTLI 130
            VA  V  E T   LM+ L+  YEKPS NNKV+L+KKLFN++M+E+ASV  ++NE  T+ 
Sbjct: 70  SVAHNVVKEKTTTDLMKVLSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTIT 129

Query: 131 NQLKSVKIEFSDEVNVIPLLTFLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQ 190
           NQL SV+I+F DE+  + +L  LP+SWE M+ AVSNSTG   LK++++ DL +AEEIRR+
Sbjct: 130 NQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIQDLILAEEIRRR 189

Query: 191 GSNKESTVGPALVMT---KGHFKYQC---RKFKEDQKRKPEANIVEEVVLACVESDTKYN 250
            + + S  G AL +    +GHFK QC   +K  ED         V++ +L  V+S     
Sbjct: 190 DAGETSGSGSALNLETRGRGHFKRQCKSPKKKNEDDSANXVTEEVQDALLLAVDSPL--- 249

Query: 251 NHSSDWILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKL 310
               DW+LDS AS H    R +  ++  G  G V + +G      G+GDV +    G   
Sbjct: 250 ---DDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVW 309

Query: 311 VLRDVRYVPNIKMNLISIGKLADDGYMCEFGSRQCKLKFRSQVVAVGHTKSTLYI 359
           +L  VRY+P+++ NLIS+G+L D+G+   F     K+   ++V+A G    TLY+
Sbjct: 310 LLEKVRYIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTDTLYM 358

BLAST of Lag0035607 vs. TAIR 10
Match: AT3G29785.1 (unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-10
Identity = 33/88 (37.50%), Postives = 57/88 (64.77%), Query Frame = 0

Query: 14  KFDGKNFGYWKMQVKDCLSCKKVHKSLKERPKEMSDEDWEALDEEAIATIRMCLSMDVAS 73
           K DG ++ + +M+++D L  KK+H+ L ++ + MS +DW  L  + +  IR+ +S ++A 
Sbjct: 8   KVDGTSYSFCRMKIEDYLYGKKLHQPLGKKVETMSQDDWNILYRQVLDVIRLTISKNIAH 67

Query: 74  LVAHETTAVKLMEALTNRYEKPSTNNKV 102
            VA E +   LM+ L++ Y+KPSTNN V
Sbjct: 68  NVAKEKSPDGLMKVLSDIYKKPSTNNTV 95

BLAST of Lag0035607 vs. TAIR 10
Match: AT3G20980.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 52.0 bits (123), Expect = 1.5e-06
Identity = 33/109 (30.28%), Postives = 55/109 (50.46%), Query Frame = 0

Query: 226 NIVEEVVLACVESDTKYNNHSSDWILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTS 285
           +++ EV     E  +KY  H + W++ S  S H+      FT+        V+  +G  S
Sbjct: 246 DLLNEVPDHVAECFSKYTFHENIWLISSTNSNHMTPHVKFFTTLDRSRKCKVKFISGDKS 305

Query: 286 KT-----RGIGDVSLKTECGGKLVLRDVRYVPNIKMNLISIGKLADDGY 330
           +T      GIGDV+  T  G K  +++V YVP I+ N +S+ +L  +G+
Sbjct: 306 ETTVAMVEGIGDVTFITNEGNK-TIKNVLYVPGIEGNALSVSQLKRNGF 353

BLAST of Lag0035607 vs. TAIR 10
Match: AT3G21000.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 51.2 bits (121), Expect = 2.6e-06
Identity = 64/313 (20.45%), Postives = 128/313 (40.89%), Query Frame = 0

Query: 43  RPKEMSD-EDWEALDEEAIATIRMCLSMDVASLVAHETTAVKLMEALTNRYEKPSTNNKV 102
           +P+E+S   D+   D +A+  ++  L+  V       ++A  + + L    E+ +     
Sbjct: 56  QPEELSKWRDFVVKDAKALQILQSSLTDSVFRKTLSASSAKDVWDLLRKGNEQATIRRLE 115

Query: 103 Y-----LVKKLFNMQMSEDASVNFYINEVTTLINQLKSVKIEFSDEVNVIPLLTFLPDSW 162
                 L K+L +++M +  S + Y+++   ++ +L   K+E SD      + T L  S+
Sbjct: 116 QVTIRRLEKQLEDLKMVDKESGSSYLDKALEILERLGRAKLEKSDYEICKNVFTTLSGSF 175

Query: 163 ETMKTA------VSNSTGNNTLKF---------SEVCDLAIAEEIRRQGSNKESTVGPAL 222
           + + +       V   T  + +++         +E     + +++R + S  E   G  L
Sbjct: 176 DGLDSMLEELIDVHKMTSKSLVEYFYYRVHESSTEEAIFGLLKDLRLK-SKSEKWCG--L 235

Query: 223 VMTKGHFKYQCRKFKEDQKRKPEANIVEEVVLACVESDTKYNNHSSDWILDSAASVHIAS 282
                H +  C+      K + E  IV +  L  V +          WI+   A +++  
Sbjct: 236 CYKNNHNQEDCKFRIHTDKEEKEDEIVVDYRLETVPNLGAKTYDDDIWIIHKMAPINMTP 295

Query: 283 DRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRYVPNIKMNLISI 335
               FT+        V   +G      G GDV ++ + G K  +R+V +VP +  N++S 
Sbjct: 296 YVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIRNVIFVPGLNRNVLSF 355

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RVW73393.13.6e-6640.85Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVW17810.13.6e-6640.85Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVW62119.16.1e-6640.85Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
CAN74198.18.0e-6640.56hypothetical protein VITISV_005765 [Vitis vinifera][more]
TKS02608.11.4e-6537.99hypothetical protein D5086_0000161380 [Populus alba][more]
Match NameE-valueIdentityDescription
P109782.4e-4131.95Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Q94HW21.5e-0637.29Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
P256012.6e-0636.78Putative transposon Ty5-1 protein YCL075W OS=Saccharomyces cerevisiae (strain AT... [more]
Q9ZT948.2e-0535.29Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
A0A2N9GZ722.1e-6740.26Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35439 PE=4 SV=1[more]
A0A438GME71.7e-6640.85Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A438C3I21.7e-6640.85Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A438FQ913.0e-6640.85Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A5B5N43.9e-6640.56Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI... [more]
Match NameE-valueIdentityDescription
AT3G29785.11.8e-1037.50unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bact... [more]
AT3G20980.11.5e-0630.28Gag-Pol-related retrotransposon family protein [more]
AT3G21000.12.6e-0620.45Gag-Pol-related retrotransposon family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 52..189
e-value: 1.7E-25
score: 89.4
NoneNo IPR availablePANTHERPTHR34676:SF1ZINC FINGER, CCHC-TYPE, TUBBY C-TERMINAL-LIKE DOMAIN PROTEIN-RELATEDcoord: 12..196
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 12..196

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0035607.1Lag0035607.1mRNA