Lag0035591 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0035591
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionAutophagy-related protein
Locationchr3: 24755346 .. 24757832 (+)
RNA-Seq ExpressionLag0035591
SyntenyLag0035591
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAGAGCTACTTCAAGCAAGAGCATGATCTTGGTAGTTTTCAACTCCACGTTTCTAATATGCTTTTCTTTTTCCCTAGAGATTTTATCAAGTCCATTTTGTAAGACTAGAACTGATAAGATTTCCTTGTTTGTTTTACCAGAAAAAAGAAAAGCAGAGGCTGCAAGGATTAGGGAGAAATACCCTGATAGAATTCCAGTAAGAAATGATTTTATTTTGGAACCTTGATTTGATAGGCTATTGATTATCATCAACTTGATGTCAAGATATTGGTTTAACAAAGCTTGGATGTTTTTGTATTAAACTCCTCACTCTTAAGTAACAAGTCAAATTTGTTCATGTCAGCATCCTTTTCTGTCTGTCATTTGGCAAGGAAGCAATCAGTTCTTGATAATGTAGTCTTTGATTTCTTACACGAAACCTGGATAGTGTGTTTTAAGAATGAAATGTCTCAAAATGAATGTCTCAAAATCGGACCCGACGAGCAAACCTCTGTCCATACACTAGCTTGCAAGACCATCGTCAATGACACTATGGAGTTGATTTGTGCAATTATATAAGGTTGTTACTGTTGCAAGCATGCCAACCTTCATCTACCTCCCAGCCTTAATGTCTTGCATTGCCCATGTTGTACCAAAATTTGGAAATCTCTTTTCTTATGCTTCATATGGATGTTTGTGATGAATTTGAATTGGAAATTGACTTGCGTACCCATGAAGAATATACGTACGTGCAAAATTGTGTAGATCTTTGTGTTGTCTTTTTTTTAGGAGAAGGAGATCTTTTTGCTGTTTTGGTATGCTTTGCTTTGTTAATTTGATATCTACAAGCGAGCTTAAGATTGTTGAAGTTTATTTATTTTGTTATTGGTTATATTTTTATTAAAAGTGGGTGACATTAGAGAAGTTACTTTTTTTTTTTTTTTTTACTTTAGCTAAGAATTAATAACACTATTTTGACTAAGCTTATTCTTCGTTTTGTGTAGTTTTGAGAAATTATGCATAAATTACACAAATGTAAAGTTGCTATAACTTTTCAACCACATATTTCTCACTTCTTTAATTTCTCTCATTCAAGGACAACTTTGAATGTTACAATGATATTTATAGCACCTCTTCAAGACAGAGCAAGAAGCATATGATAAGAAGAAATTGAGCAAAGCTGGCATACTATTTGTTGATAATCGAGCTCTCCTAGATCTCATTTAGAAGGTTCATCTCTCATCCTTAGGATTTTTCTCCTTGAGTTATGAGCTTCAACTCAGTCTTATGCAGTTGACTGGCTTCTCTGATATAAATAGTGAAATTACATTACTGTCGAGAAGAAAAATTACAATATTGAACCCCAAGCACTTGTTGGGAGTGCGACCAAAGTCCCACATTAGGTAGATAAGGGGATGATGTTATGCTTCTTTTGCATCTTGCTTGAAAAATGGGAAGTTTATGGTTTCTAGTTAAAGTGTTTATTTTGCTTTGTTATTGAACTGTCTAACAATTGGTTTCACTCTAGTCTTATTCACCCTGTTATTGAAGTTTTGGATTCTTGTTTGATGCGAGTTACAAGATGGAATCACGTAGTATCAAGCATATGTTTTCATAGTTCTTTGACTTTGTCAGCTTGCTGTTTAATATTAAACTATTTCTTTCTCTGAAGTTCTAGCTTTGCTTCAAAAACCTTTTCTTTTCTTATTATTATGTCTTAGAGTGTCTTGTTTAGTAAAAGAAATGGGGTTCGGTAATGGGTTATGTTAAACAGATTTTGATTTGGATGCTAAGTGACTTTTCGATCCGAAGCAAATCTTTGTTGGGCCAAGGATTGGGGAGGGCGCACATGGCAAAGTGCACAAAGGGAAGTAAGTTATCCTAAACTTGATACTTTTCTCTCGGCTTTGAATTCTTGGGTTTGAAGTTTTTTGTGTTCTATTCAATTCTGATCTCTGAATTCTTGGTTCGCAATCGTTGTATTCTTTCTTTATTTTATGTTCTTTTCTTTTCTTCTGGTTCCTTTTTTTTTTTTTTGTGTTGCAAGTGGAAATTAAAGAATATTCTTCAGTTCTCTGACTTTGAATACCGATTGATGTACAATATGTATAGTCTACATTCTGATTTTCCAATTACTTTATTCATACTTGTCGTAGAACAAGAACTAATAGGAGTCCTGTTAGAGGGCGATAACAAACAGAAATTGTCATATTTATTTTAGCTTCAGGTAGTCGTTTTTCTGGTGATTAGCTTGATTAATTAAGTTTATGCAGTCGTATTCCTTTTTGTTTTTGTCTATTCATTCAACTGATGTTTGGGTATTGGGTTCTTTTACTCTCGCTGTGGTCAGTTCAATTAATGAATGTTTGCTGATCAATGGGCCAGAGGTTATGAAGTTGGTTTTTTGGTGTTGTTACAGGTTTTGCAATTACTGGTCCTATTGGAAAGGAGTATGCGGATTTATGGCCTAGGATCGCAAGTGCAGCCAATGCTATCATGTAG

mRNA sequence

ATGGCTAAGAGCTACTTCAAGCAAGAGCATGATCTTGAAAAAAGAAAAGCAGAGGCTGCAAGGATTAGGGAGAAATACCCTGATAGAATTCCAATTTTGATTTGGATGCTAAGTGACTTTTCGATCCGAAGCAAATCTTTGTTGGGCCAAGGATTGGGGAGGGCGCACATGGCAAAGTGCACAAAGGGAAGTTTTGCAATTACTGGTCCTATTGGAAAGGAGTATGCGGATTTATGGCCTAGGATCGCAAGTGCAGCCAATGCTATCATGTAG

Coding sequence (CDS)

ATGGCTAAGAGCTACTTCAAGCAAGAGCATGATCTTGAAAAAAGAAAAGCAGAGGCTGCAAGGATTAGGGAGAAATACCCTGATAGAATTCCAATTTTGATTTGGATGCTAAGTGACTTTTCGATCCGAAGCAAATCTTTGTTGGGCCAAGGATTGGGGAGGGCGCACATGGCAAAGTGCACAAAGGGAAGTTTTGCAATTACTGGTCCTATTGGAAAGGAGTATGCGGATTTATGGCCTAGGATCGCAAGTGCAGCCAATGCTATCATGTAG

Protein sequence

MAKSYFKQEHDLEKRKAEAARIREKYPDRIPILIWMLSDFSIRSKSLLGQGLGRAHMAKCTKGSFAITGPIGKEYADLWPRIASAANAIM
Homology
[Close]
BLAST of Lag0035591 vs. NCBI nr
Match: RYR78108.1 (hypothetical protein Ahy_A01g002846 isoform A [Arachis hypogaea])

HSP 1 Score: 68.6 bits (166), Expect = 3.2e-08
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 1  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPILIWMLSDFSIRSKSLL 49
          MAKSYFKQEHDLEKR+AEAARIREKYPDRIP+ I   SDF   + SL+
Sbjct: 1  MAKSYFKQEHDLEKRRAEAARIREKYPDRIPVRI--RSDFFFAALSLI 46

[Close]
BLAST of Lag0035591 vs. NCBI nr
Match: KAG6579417.1 (Autophagy-related protein 8f, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.8 bits (164), Expect = 5.5e-08
Identity = 31/34 (91.18%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 1  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPILI 35
          MAKSYFKQEHDLEKRKAEAARIREKYPDRIP+++
Sbjct: 35 MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIV 68

[Close]
BLAST of Lag0035591 vs. NCBI nr
Match: KAF7828408.1 (autophagy-related protein 8f-like [Senna tora])

HSP 1 Score: 67.8 bits (164), Expect = 5.5e-08
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 1  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPILIWMLSDFSIRS 45
          MAKSYFKQEHDLEKR+AEAARIREKYPDRIPI + ++ + + RS
Sbjct: 1  MAKSYFKQEHDLEKRRAEAARIREKYPDRIPIYLKVIVEKAERS 44

[Close]
BLAST of Lag0035591 vs. NCBI nr
Match: XP_022154834.1 (autophagy-related protein 8f [Momordica charantia] >XP_022154835.1 autophagy-related protein 8f [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 5.5e-08
Identity = 31/34 (91.18%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 1  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPILI 35
          MAKSYFKQEHDLEKRKAEAARIREKYPDRIP+++
Sbjct: 1  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIV 34

[Close]
BLAST of Lag0035591 vs. NCBI nr
Match: XP_038876334.1 (autophagy-related protein 8f isoform X2 [Benincasa hispida])

HSP 1 Score: 67.8 bits (164), Expect = 5.5e-08
Identity = 31/34 (91.18%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 1  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPILI 35
          MAKSYFKQEHDLEKRKAEAARIREKYPDRIP+++
Sbjct: 1  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIV 34

[Close]
BLAST of Lag0035591 vs. ExPASy Swiss-Prot
Match: Q8VYK7 (Autophagy-related protein 8f OS=Arabidopsis thaliana OX=3702 GN=ATG8F PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-09
Identity = 29/34 (85.29%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 1  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPILI 35
          MAKS FKQEHDLEKR+AEAARIREKYPDRIP+++
Sbjct: 1  MAKSSFKQEHDLEKRRAEAARIREKYPDRIPVIV 34

[Close]
BLAST of Lag0035591 vs. ExPASy Swiss-Prot
Match: M1C146 (Autophagy-related protein 8C-like OS=Solanum tuberosum OX=4113 GN=ATG8CL PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.2e-07
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPILI 35
          MAKS FK EH LE+R+AEAARIREKYPDRIP+++
Sbjct: 1  MAKSSFKLEHPLERRQAEAARIREKYPDRIPVIV 34

[Close]
BLAST of Lag0035591 vs. ExPASy Swiss-Prot
Match: Q9SL04 (Autophagy-related protein 8d OS=Arabidopsis thaliana OX=3702 GN=ATG8D PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.9e-07
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 1  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPILI 35
          MA S FK EH LEKR+AEAARIREKYPDRIP+++
Sbjct: 1  MAISSFKHEHPLEKRQAEAARIREKYPDRIPVIV 34

[Close]
BLAST of Lag0035591 vs. ExPASy Swiss-Prot
Match: A2YS06 (Autophagy-related protein 8C OS=Oryza sativa subsp. indica OX=39946 GN=ATG8C PE=3 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 2.4e-06
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 1  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPILI 35
          MA+S FK EH LE+R+AEA RIREKYPDRIP+++
Sbjct: 1  MARSSFKLEHPLERRQAEANRIREKYPDRIPVIV 34

[Close]
BLAST of Lag0035591 vs. ExPASy Swiss-Prot
Match: Q6Z1D5 (Autophagy-related protein 8C OS=Oryza sativa subsp. japonica OX=39947 GN=ATG8C PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.4e-06
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 1  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPILI 35
          MA+S FK EH LE+R+AEA RIREKYPDRIP+++
Sbjct: 1  MARSSFKLEHPLERRQAEANRIREKYPDRIPVIV 34

The following BLAST results are available for this feature:
BLAST of Lag0035591 vs. NCBI nr
Match NameE-valueIdentityDescription
RYR78108.13.2e-0875.00hypothetical protein Ahy_A01g002846 isoform A [Arachis hypogaea][more]
KAG6579417.15.5e-0891.18Autophagy-related protein 8f, partial [Cucurbita argyrosperma subsp. sororia][more]
KAF7828408.15.5e-0875.00autophagy-related protein 8f-like [Senna tora][more]
XP_022154834.15.5e-0891.18autophagy-related protein 8f [Momordica charantia] >XP_022154835.1 autophagy-rel... [more]
XP_038876334.15.5e-0891.18autophagy-related protein 8f isoform X2 [Benincasa hispida][more]
BLAST of Lag0035591 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8VYK71.8e-0985.29Autophagy-related protein 8f OS=Arabidopsis thaliana OX=3702 GN=ATG8F PE=1 SV=1[more]
M1C1462.2e-0776.47Autophagy-related protein 8C-like OS=Solanum tuberosum OX=4113 GN=ATG8CL PE=1 SV... [more]
Q9SL044.9e-0776.47Autophagy-related protein 8d OS=Arabidopsis thaliana OX=3702 GN=ATG8D PE=1 SV=1[more]
A2YS062.4e-0670.59Autophagy-related protein 8C OS=Oryza sativa subsp. indica OX=39946 GN=ATG8C PE=... [more]
Q6Z1D52.4e-0670.59Autophagy-related protein 8C OS=Oryza sativa subsp. japonica OX=39947 GN=ATG8C P... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.20.90coord: 1..65
e-value: 1.1E-9
score: 40.2
NoneNo IPR availablePANTHERPTHR10969:SF77AUTOPHAGY-RELATED PROTEINcoord: 1..34
IPR004241Autophagy protein Atg8 ubiquitin-likePANTHERPTHR10969MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATEDcoord: 1..34
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 3..40

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0035591.1Lag0035591.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006914 autophagy
biological_process GO:0006995 cellular response to nitrogen starvation
cellular_component GO:0016020 membrane
cellular_component GO:0005874 microtubule