Lag0035589 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0035589
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr3: 24726134 .. 24726502 (+)
RNA-Seq ExpressionLag0035589
SyntenyLag0035589
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAGCCTACGACCATGGAATTCAAATATGCAACTTTCTGGTTGCATTTTTGTGAACTACCAATGGACCTTTATAACTTATCGATGGCAGAACGCTTGGGCAACACAATTGGTCAATTCCAGGAGTATGACAATGGAGGGCGAGGATTCAGCTGGAAGGAGAGTCTTCGAGTGCACATTATTCTTGACATTACAAGGCCCTTTTGTCGTGGTATCAAGGGTCGGCTTGACGATCCTTTGGGTAGCATTTGGACTCCTATCAAGTATGAGAAGTTGCTGGAAATTTGTTCGTATTCTGGCCGGATCACACATGTTACAAAGGACTGCACGTTCACATTTGCAGAGTATGGTTCATCCCGACGATAA

mRNA sequence

ATGGTGAAGCCTACGACCATGGAATTCAAATATGCAACTTTCTGGTTGCATTTTTGTGAACTACCAATGGACCTTTATAACTTATCGATGGCAGAACGCTTGGGCAACACAATTGGTCAATTCCAGGAGTATGACAATGGAGGGCGAGGATTCAGCTGGAAGGAGAGTCTTCGAGTGCACATTATTCTTGACATTACAAGGCCCTTTTGTCGTGGTATCAAGGGTCGGCTTGACGATCCTTTGGGTAGCATTTGGACTCCTATCAAGTATGAGAAGTTGCTGGAAATTTGTTCGTATTCTGGCCGGATCACACATGTTACAAAGGACTGCACGTTCACATTTGCAGAGTATGGTTCATCCCGACGATAA

Coding sequence (CDS)

ATGGTGAAGCCTACGACCATGGAATTCAAATATGCAACTTTCTGGTTGCATTTTTGTGAACTACCAATGGACCTTTATAACTTATCGATGGCAGAACGCTTGGGCAACACAATTGGTCAATTCCAGGAGTATGACAATGGAGGGCGAGGATTCAGCTGGAAGGAGAGTCTTCGAGTGCACATTATTCTTGACATTACAAGGCCCTTTTGTCGTGGTATCAAGGGTCGGCTTGACGATCCTTTGGGTAGCATTTGGACTCCTATCAAGTATGAGAAGTTGCTGGAAATTTGTTCGTATTCTGGCCGGATCACACATGTTACAAAGGACTGCACGTTCACATTTGCAGAGTATGGTTCATCCCGACGATAA

Protein sequence

MVKPTTMEFKYATFWLHFCELPMDLYNLSMAERLGNTIGQFQEYDNGGRGFSWKESLRVHIILDITRPFCRGIKGRLDDPLGSIWTPIKYEKLLEICSYSGRITHVTKDCTFTFAEYGSSRR
Homology
BLAST of Lag0035589 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 117.9 bits (294), Expect = 6.3e-23
Identity = 49/104 (47.12%), Postives = 67/104 (64.42%), Query Frame = 0

Query: 7   MEFKYATFWLHFCELPMDLYNLSMAERLGNTIGQFQEYDNGGRGFSWKESLRVHIILDIT 66
           +EF    FW+H  +LPM   N +MA RLGN IG F + D   +GFSW  SLR+ +++DIT
Sbjct: 121 LEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDIT 180

Query: 67  RPFCRGIKGRLDDPLGSIWTPIKYEKLLEICSYSGRITHVTKDC 111
           +P  RGIK  +D P+G  W PI+YE+L + C + G I H + DC
Sbjct: 181 KPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFCGVIGHSSHDC 224

BLAST of Lag0035589 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 111.7 bits (278), Expect = 4.5e-21
Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = 0

Query: 1   MVKPTTMEFKYATFWLHFCELPMDLYNLSMAERLGNTIGQFQEYDNGGRGFSWKESLRVH 60
           + KP  M+F+  + W+HF +L +   N +MA RLGN IG F++ ++    F W   LRV 
Sbjct: 116 LTKPLDMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVR 175

Query: 61  IILDITRPFCRGIKGRLDDPLGSIWTPIKYEKLLEICSYSGRITHVTKDCT 112
           +  D+ +P  RGIK  LD P+G  W PI+YE+L +   + GR+ H+ KDC+
Sbjct: 176 VRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDCS 226

BLAST of Lag0035589 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 95.1 bits (235), Expect = 4.4e-16
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 0

Query: 1   MVKPTTMEFKYATFWLHFCELPMDLYNLSMAERLGNTIGQFQEYDNGGRGFSWKESLRVH 60
           ++ P+ ++F     W+ F +LP+      MA RLGN +G F+E D       W  +LRV 
Sbjct: 116 LIPPSELDFTKLPIWVRFFDLPLGCITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVR 175

Query: 61  IILDITRPFCRGIKGRLDDPLGSIWTPIKYEKLLEICSYSG 102
           ++LDI++P  RGIK  LD P+G  W PI+YE+L + C + G
Sbjct: 176 VMLDISKPLRRGIKLNLDGPIGGAWIPIQYERLPDFCYHCG 216

BLAST of Lag0035589 vs. NCBI nr
Match: XP_028122006.1 (uncharacterized protein LOC114319195 [Camellia sinensis])

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-14
Identity = 40/120 (33.33%), Postives = 63/120 (52.50%), Query Frame = 0

Query: 2   VKPTTMEFKYATFWLHFCELPMDLYNLSMAERLGNTIGQFQEYDNGGRGFSWKESLRVHI 61
           V+P+ ++     FW+H C LP+ L N  + E +GN +GQF + D    G  W  ++R+ +
Sbjct: 114 VQPSDIQLTRVQFWVHVCNLPLVLMNKKVGEIVGNAVGQFIDMDYEDGGIVWGRTMRIRV 173

Query: 62  ILDITRPFCRGIKGRLDDPLGSIWTPIKYEKLLEICSYSGRITHVTKDCTFTFAEYGSSR 121
            LD+ +P  RG+K  L      IW   KYE+L   C + GR+ H  ++C    +    SR
Sbjct: 174 ALDVRKPLRRGMKLALSS-AEPIWVDFKYERLPIYCYFCGRLGHSERECDDKLSSADGSR 232

BLAST of Lag0035589 vs. NCBI nr
Match: XP_028071384.1 (uncharacterized protein LOC114273772 [Camellia sinensis])

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-14
Identity = 36/109 (33.03%), Postives = 62/109 (56.88%), Query Frame = 0

Query: 2   VKPTTMEFKYATFWLHFCELPMDLYNLSMAERLGNTIGQFQEYDNGGRGFSWKESLRVHI 61
           V+P+ ++  +  FW+H C LP+ L N  + + +GN +GQF + D    G +W  ++ + +
Sbjct: 114 VQPSDIQLTWVQFWVHVCNLPLILMNKKVGQIVGNAVGQFIDMDYEDGGIAWGRTMLIRV 173

Query: 62  ILDITRPFCRGIKGRLDDPLGSIWTPIKYEKLLEICSYSGRITHVTKDC 111
            LD+ +P  RG+K  L   +  IW   KYE+L   C + GR+ H  ++C
Sbjct: 174 ALDVRKPLRRGMKLALSS-VEPIWVDFKYERLPIYCYFCGRLGHSDREC 221

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156185.16.3e-2347.12uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
XP_022132681.14.5e-2140.54uncharacterized protein LOC111005481 [Momordica charantia][more]
XP_022158377.14.4e-1639.60uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_028122006.11.1e-1433.33uncharacterized protein LOC114319195 [Camellia sinensis][more]
XP_028071384.11.8e-1433.03uncharacterized protein LOC114273772 [Camellia sinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 2..61
e-value: 1.6E-7
score: 30.9
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 63..111
e-value: 2.1E-6
score: 27.3

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0035589.1Lag0035589.1mRNA