Lag0035573 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0035573
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RT_RNaseH_2 domain-containing protein
Location	chr3: 24384321 .. 24385246 (-)
RNA-Seq Expression	Lag0035573
Synteny	Lag0035573

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAGAAGAGGTACCTGTTACCCCTGAGGTACGGAAAACGAATGCAAAGAAAAAGAAAACGTTGGAGGAAAAGGAAGCTAAAAGAAGAAAAAAGGCAACAGAGGGCTGAGGATCAAGAAATTGTACAGAAAGTAGTAGAGGATATTGCTGTCGTGGTAGTTGAAGAAGGCAATCCGAAGGAACCTGAAGAACAAAACCCAGAGCATATTGAACCCGATAGTCGGATACAGAGGAAGTTCAAGAAGAGCACACAGAGGAAGTTCAAGAAAAGCAGACAGAGAATGCGCGAGAGGGACAGACAGACGTTGTGCAGGAAAAAGGGAATGAGCAAGAGTAGGAGGATCAAGTAGAGGTTATTATGCCTGAGGTGCCCAGTCGTCGTCGTTGGAAACAAAAGGACGGTCGTGTGAAGGTGGTTCAGACTGATACTCCCTCGTTGCCGACAACGGATTTTGACAGAGAGAATGCAGAGAGAGAGGAACAGGAGAAAAAATAGGTCGAAGACAAAGCAAGAGAGGAAGCAGAGAAAAAGGGTGAAGAAGAAATTTTGCCCAAACAAAGGGAAGACAAGGGCAAAGGTATTGTTGAGGCATCGCCAGAACCAGATGATAGTGAAACAGAGGAGCCACAATTACCGTACAATCGCTTCATCAATAACTTTGCTAGAGCAAAGTATGTCGAGATGCTGAGAAGAGACTTTTTGTTTGAACGAGGATTTGGCGATGATCTGCCACGGTTCTTGAGGACTGGAATAGCGAAGCATGGCTGGAGTCAATTTTGTGCGAAGCCGGAGCCGGTCAATTCCAACATTGTTCGAGAGTTTTATGCAAATATTGATGATCAAGAGGGATTTCAGGCTATCGTCCGAGGAGTGCCTGTTGACTGGAGCCCAGGAGCTATCAATTCTCTATTCGACCTCTAA

mRNA sequence

ATGAGGAAGAAGAGGTACCTGTTACCCCTGAGGTACGGAAAACGAATGCAAAGAAAAAGAAAACGTTGGAGGAAAAGGAAGCTAAAAGAAGAAAAAAGGCAACAGAGGGCTGAGGATCAAGAAATTGTACAGAAAGTAGTAGAGGATATTGCTGTCGTGGTAGTTGAAGAAGGCAATCCGAAGGAACCTGAAGAACAAAACCCAGAGCATATTGAACCCGATAGTCGGATACAGAGGAAGTTCAAGAAGAGCACACAGAGGAAGTTCAAGAAAAGCAGACAGAGAATGCGCGAGAGGGACAGACAGACGTTGTGCAGGAAAAAGGGAATGAGCAAGAGTAGGAGGATCAAGGAAGACAAGGGCAAAGGTATTGTTGAGGCATCGCCAGAACCAGATGATAGTGAAACAGAGGAGCCACAATTACCGTACAATCGCTTCATCAATAACTTTGCTAGAGCAAAGTATGTCGAGATGCTGAGAAGAGACTTTTTGTTTGAACGAGGATTTGGCGATGATCTGCCACGGTTCTTGAGGACTGGAATAGCGAAGCATGGCTGGAGTCAATTTTGTGCGAAGCCGGAGCCGGTCAATTCCAACATTGTTCGAGAGTTTTATGCAAATATTGATGATCAAGAGGGATTTCAGGCTATCGTCCGAGGAGTGCCTGTTGACTGGAGCCCAGGAGCTATCAATTCTCTATTCGACCTCTAA

Coding sequence (CDS)

ATGAGGAAGAAGAGGTACCTGTTACCCCTGAGGTACGGAAAACGAATGCAAAGAAAAAGAAAACGTTGGAGGAAAAGGAAGCTAAAAGAAGAAAAAAGGCAACAGAGGGCTGAGGATCAAGAAATTGTACAGAAAGTAGTAGAGGATATTGCTGTCGTGGTAGTTGAAGAAGGCAATCCGAAGGAACCTGAAGAACAAAACCCAGAGCATATTGAACCCGATAGTCGGATACAGAGGAAGTTCAAGAAGAGCACACAGAGGAAGTTCAAGAAAAGCAGACAGAGAATGCGCGAGAGGGACAGACAGACGTTGTGCAGGAAAAAGGGAATGAGCAAGAGTAGGAGGATCAAGGAAGACAAGGGCAAAGGTATTGTTGAGGCATCGCCAGAACCAGATGATAGTGAAACAGAGGAGCCACAATTACCGTACAATCGCTTCATCAATAACTTTGCTAGAGCAAAGTATGTCGAGATGCTGAGAAGAGACTTTTTGTTTGAACGAGGATTTGGCGATGATCTGCCACGGTTCTTGAGGACTGGAATAGCGAAGCATGGCTGGAGTCAATTTTGTGCGAAGCCGGAGCCGGTCAATTCCAACATTGTTCGAGAGTTTTATGCAAATATTGATGATCAAGAGGGATTTCAGGCTATCGTCCGAGGAGTGCCTGTTGACTGGAGCCCAGGAGCTATCAATTCTCTATTCGACCTCTAA

Protein sequence

MRKKRYLLPLRYGKRMQRKRKRWRKRKLKEEKRQQRAEDQEIVQKVVEDIAVVVVEEGNPKEPEEQNPEHIEPDSRIQRKFKKSTQRKFKKSRQRMRERDRQTLCRKKGMSKSRRIKEDKGKGIVEASPEPDDSETEEPQLPYNRFINNFARAKYVEMLRRDFLFERGFGDDLPRFLRTGIAKHGWSQFCAKPEPVNSNIVREFYANIDDQEGFQAIVRGVPVDWSPGAINSLFDL

Homology

[Close]

BLAST of Lag0035573 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-07
Identity = 31/61 (50.82%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 176 FLRTGIAKHGWSQFCAKPEPVNSNIVREFYANIDDQEGFQAIVRGVPVDWSPGAINSLFD 235
           F+   I +H W QFCA PE     +VREFYAN+ D E     VRGV V WS  AIN++F 
Sbjct: 62  FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFG 121

Query: 236 L 237
           L
Sbjct: 122 L 122

[Close]

BLAST of Lag0035573 vs. NCBI nr
Match: PON90635.1 (hypothetical protein TorRG33x02_134920 [Trema orientale])

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-07
Identity = 39/99 (39.39%), Postives = 52/99 (52.53%), Query Frame = 0


Query: 145 RFINNFARAKYVEMLRRDFL-FERGFGDD------LPRFLRTGIAKHGWSQFCAKPEPVN 204
           +F +  A A+Y E ++   L  E+GF  +       P F+   I +H W  FCA  E   
Sbjct: 15  KFDSEAAEARYEEHIKNQPLGAEKGFAWNNNEPLGQPPFIADVIIQHNWQLFCAHHEDPI 74

Query: 205 SNIVREFYANIDDQEGFQAIVRGVPVDWSPGAINSLFDL 237
             +VREFYAN+ D E     V+GV V WS  AIN+LF L
Sbjct: 75  VPLVREFYANLTDPEEDTVYVKGVQVPWSEEAINTLFGL 113

[Close]

BLAST of Lag0035573 vs. NCBI nr
Match: KAE8695166.1 (hypothetical protein F3Y22_tig00110733pilonHSYRG00282 [Hibiscus syriacus])

HSP 1 Score: 66.6 bits (161), Expect = 3.2e-07
Identity = 33/97 (34.02%), Postives = 50/97 (51.55%), Query Frame = 0


Query: 146 FINNFARAKYVEMLRRDFLFERGF------GDDLPRFLRTGIAKHGWSQFCAKPEPVNSN 205
           F++  A+  Y  +  R   FE GF        +L   +   + KH W +F   P PVN+ 
Sbjct: 15  FVDEAAKEHYQTIKNRRVFFELGFVFSEAENANLGSEVLDVVTKHKWQKFAKHPVPVNAT 74

Query: 206 IVREFYANIDDQEGFQAIVRGVPVDWSPGAINSLFDL 237
           IV+EFY+NI +      +VRG+ + ++P AIN  F L
Sbjct: 75  IVKEFYSNITEPNQHAVMVRGISIRFTPTAINRYFKL 111

[Close]

BLAST of Lag0035573 vs. NCBI nr
Match: PON85987.1 (hypothetical protein TorRG33x02_181920, partial [Trema orientale])

HSP 1 Score: 66.2 bits (160), Expect = 4.2e-07
Identity = 39/102 (38.24%), Postives = 48/102 (47.06%), Query Frame = 0


Query: 135 ETEEPQLPYNRFINNFARAKYVEMLRRDFLFERGFGDDLPRFLRTGIAKHGWSQFCAKPE 194
           ETEE +  Y   I      K      + FL           F+   I +H W QFCA PE
Sbjct: 49  ETEEAETRYEENIQ-----KQPLNAEKGFLLNNSETMGQQPFIAQVINQHNWRQFCAHPE 108

Query: 195 PVNSNIVREFYANIDDQEGFQAIVRGVPVDWSPGAINSLFDL 237
                +VREFYAN+ D E     VRGV V W+  AIN++F L
Sbjct: 109 DPIVPLVREFYANLTDPEEDTVYVRGVQVPWTEEAINTVFGL 145

[Close]

BLAST of Lag0035573 vs. NCBI nr
Match: EXB63566.1 (hypothetical protein L484_026904 [Morus notabilis])

HSP 1 Score: 65.1 bits (157), Expect = 9.4e-07
Identity = 29/78 (37.18%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 159 LRRDFLFERGFGDDLPRFLRTGIAKHGWSQFCAKPEPVNSNIVREFYANIDDQEGFQAIV 218
           + R F++ RG     P F+ + IA H W  FC  P      +VR+FYAN +  E     +
Sbjct: 1   MERGFVYRRGRPSGYPSFIHSVIAAHKWHSFCHNPPAATVQLVRKFYANYNAAEPDTIFI 60

Query: 219 RGVPVDWSPGAINSLFDL 237
           RG  + ++  AINSL+DL
Sbjct: 61  RGKLIPFTSEAINSLYDL 78

[Close]

BLAST of Lag0035573 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.4e-08
Identity = 31/61 (50.82%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 176 FLRTGIAKHGWSQFCAKPEPVNSNIVREFYANIDDQEGFQAIVRGVPVDWSPGAINSLFD 235
           F+   I +H W QFCA PE     +VREFYAN+ D E     VRGV V WS  AIN++F 
Sbjct: 62  FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFG 121

Query: 236 L 237
           L
Sbjct: 122 L 122

[Close]

BLAST of Lag0035573 vs. ExPASy TrEMBL
Match: A0A2P5EYL5 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_134920 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.1e-08
Identity = 39/99 (39.39%), Postives = 52/99 (52.53%), Query Frame = 0


Query: 145 RFINNFARAKYVEMLRRDFL-FERGFGDD------LPRFLRTGIAKHGWSQFCAKPEPVN 204
           +F +  A A+Y E ++   L  E+GF  +       P F+   I +H W  FCA  E   
Sbjct: 15  KFDSEAAEARYEEHIKNQPLGAEKGFAWNNNEPLGQPPFIADVIIQHNWQLFCAHHEDPI 74

Query: 205 SNIVREFYANIDDQEGFQAIVRGVPVDWSPGAINSLFDL 237
             +VREFYAN+ D E     V+GV V WS  AIN+LF L
Sbjct: 75  VPLVREFYANLTDPEEDTVYVKGVQVPWSEEAINTLFGL 113

[Close]

BLAST of Lag0035573 vs. ExPASy TrEMBL
Match: A0A6A2ZUE4 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110733pilonHSYRG00282 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-07
Identity = 33/97 (34.02%), Postives = 50/97 (51.55%), Query Frame = 0


Query: 146 FINNFARAKYVEMLRRDFLFERGF------GDDLPRFLRTGIAKHGWSQFCAKPEPVNSN 205
           F++  A+  Y  +  R   FE GF        +L   +   + KH W +F   P PVN+ 
Sbjct: 15  FVDEAAKEHYQTIKNRRVFFELGFVFSEAENANLGSEVLDVVTKHKWQKFAKHPVPVNAT 74

Query: 206 IVREFYANIDDQEGFQAIVRGVPVDWSPGAINSLFDL 237
           IV+EFY+NI +      +VRG+ + ++P AIN  F L
Sbjct: 75  IVKEFYSNITEPNQHAVMVRGISIRFTPTAINRYFKL 111

[Close]

BLAST of Lag0035573 vs. ExPASy TrEMBL
Match: A0A2P5EK98 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_181920 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.0e-07
Identity = 39/102 (38.24%), Postives = 48/102 (47.06%), Query Frame = 0


Query: 135 ETEEPQLPYNRFINNFARAKYVEMLRRDFLFERGFGDDLPRFLRTGIAKHGWSQFCAKPE 194
           ETEE +  Y   I      K      + FL           F+   I +H W QFCA PE
Sbjct: 49  ETEEAETRYEENIQ-----KQPLNAEKGFLLNNSETMGQQPFIAQVINQHNWRQFCAHPE 108

Query: 195 PVNSNIVREFYANIDDQEGFQAIVRGVPVDWSPGAINSLFDL 237
                +VREFYAN+ D E     VRGV V W+  AIN++F L
Sbjct: 109 DPIVPLVREFYANLTDPEEDTVYVRGVQVPWTEEAINTVFGL 145

[Close]

BLAST of Lag0035573 vs. ExPASy TrEMBL
Match: W9R159 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026904 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.5e-07
Identity = 29/78 (37.18%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 159 LRRDFLFERGFGDDLPRFLRTGIAKHGWSQFCAKPEPVNSNIVREFYANIDDQEGFQAIV 218
           + R F++ RG     P F+ + IA H W  FC  P      +VR+FYAN +  E     +
Sbjct: 1   MERGFVYRRGRPSGYPSFIHSVIAAHKWHSFCHNPPAATVQLVRKFYANYNAAEPDTIFI 60

Query: 219 RGVPVDWSPGAINSLFDL 237
           RG  + ++  AINSL+DL
Sbjct: 61  RGKLIPFTSEAINSLYDL 78

The following BLAST results are available for this feature:

BLAST of Lag0035573 vs. NCBI nr


Match Name	E-value	Identity	Description
PON46472.1	1.1e-07	50.82	hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]	[more]
PON90635.1	1.9e-07	39.39	hypothetical protein TorRG33x02_134920 [Trema orientale]	[more]
KAE8695166.1	3.2e-07	34.02	hypothetical protein F3Y22_tig00110733pilonHSYRG00282 [Hibiscus syriacus]	[more]
PON85987.1	4.2e-07	38.24	hypothetical protein TorRG33x02_181920, partial [Trema orientale]	[more]
EXB63566.1	9.4e-07	37.18	hypothetical protein L484_026904 [Morus notabilis]	[more]

BLAST of Lag0035573 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0035573 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5BCG4	5.4e-08	50.82	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A2P5EYL5	9.1e-08	39.39	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_134920 PE=4 SV...	[more]
A0A6A2ZUE4	1.6e-07	34.02	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110733pilon...	[more]
A0A2P5EK98	2.0e-07	38.24	Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_181...	[more]
W9R159	4.5e-07	37.18	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026904 PE=4 SV=1	[more]

BLAST of Lag0035573 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 18..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0035573.1	Lag0035573.1	mRNA