Lag0035536 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0035536
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr3: 23699087 .. 23700530 (-)
RNA-Seq Expression	Lag0035536
Synteny	Lag0035536

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCCCGGTGAGGATCGTCCGAGATTTTTGAACTTATACCGAGAAAATTTCCAGAAACGTATAATTTTTTCATTTGTCCACTAAAACCATTTGTCCTATAGAAAATTTCCCGGTCATTGTCTCAGATCACTTAAACCGGGAGCGAGACCGGGAGTTTTTCCAGTTGAATTATTAATTTTTTTTTGTATTCTTTTTCCCTTCTTTGCAGATTGTTTTGCCTTTTGAGTCATTTTATCTTATGTATGTTTTTTAAACATGTCTAGGTCTACATTCTCATTGAGTTGTAAATGGAGTACAAAATCCACTCCGATGATCAATCTCTTATGACCTTGACTTGTTCTTCTCACATAGATAGAACTGTAGCGGATATAAAGGACAAACTTACTATCCTCAATTAAATATGTTTAGACAAACATGTTTTGGCCCCTTAATAGATAGTAACATAATCTTTACCGGCCAGTTGATTCACTACATTCTACTTAGGGAGGTGAATGATAGTAGGAAAGAAGTGATGAGTTTTGGTTGTTAGGGCATAAGGTTTCATTTGGTATACAAGAATTTGATCTCATCACTAGTCTTAGACATGCGACGAGGCATGTTAGGAGGATGTTGTAATCGGTAGACTTAGAGCCTTATATTTAAGAGATAATGAGGCAATGAAAGGTGATGAAATGAATAAACTATTCCCGACAATTGCGTTCCAGAGTGACGAAGATGCAGTTAAAATTGTCATTTTCTATTTTATTGAGTTGCTATGATGGGGAGGTAGCAGAAACAACAGATGGATACGTCCATGCTTGACATAATCGATGGCTGGGAGAGTTTTTGTAACAAGGATTGGAGTACATTTATATTCCAGAAAACTTTAGAAGCCTTAAAGAAGCATTGAAGGGCAAAGTTGAGTCCTACAAGAGGAAGAGAGACGGGTCAAGGAAGCAAGAAACATATAGTCTATATGGTTTTTGCATGCCTTCCAGGTAATCATATTTTAAAGTAATGGCATTTATAGGTTATTATATTGTAATGTACGAATTGTTTCATAAGTTTTGCTAACTTTGAATGCAGGTATGGGCATACAAGACTGTCTCATCAGTGTCGTGTGAACGAGAATGATCCACGCATTCTTAAATGGACATGCTCCCACTCGCCTACGTACTCCCGCATAAGCACGAGGTGTTTGGGTTGAGGGATGGTGAGTTTCATTTGCCACTTGTTTTTTACTCATCATTTACTGTGATTTGATACCTAAAATTAAGTTCATATGTATCAGGCAAGGATCACAGAGTTTCTTGAACCAACAGATGAGGAGCTTCGATATATGAATCATATAATGGAACCCCCACGTCCACCAACGCCTTCTCCACCCCCTCCTATAGTTGACGCTGGTGTTGGCCAGGACATTGAGATGACATATGTGACTGTGCATGACCTCGCCCAATAG

mRNA sequence

ATGAATCCCGGTGAGGATCGTCCGAGATTTTTGAACTTATACCGAGAAAATTTCCAGAAACAAAACTTTAGAAGCCTTAAAGAAGCATTGAAGGGCAAAGTTGAGTCCTACAAGAGGAAGAGAGACGGGTCAAGGAAGCAAGAAACATATAGTCTATATGGTTTTTGCATGCCTTCCAGGTATGGGCATACAAGACTGTCTCATCAGTGTCGTGTGAACGAGAATGATCCACGCATTCTTAAATGGACATGCTCCCACTCGCCTACGTACTCCCGCATAAGCACGAGGATCACAGAGTTTCTTGAACCAACAGATGAGGAGCTTCGATATATGAATCATATAATGGAACCCCCACGTCCACCAACGCCTTCTCCACCCCCTCCTATAGTTGACGCTGGTGTTGGCCAGGACATTGAGATGACATATGTGACTGTGCATGACCTCGCCCAATAG

Coding sequence (CDS)

ATGAATCCCGGTGAGGATCGTCCGAGATTTTTGAACTTATACCGAGAAAATTTCCAGAAACAAAACTTTAGAAGCCTTAAAGAAGCATTGAAGGGCAAAGTTGAGTCCTACAAGAGGAAGAGAGACGGGTCAAGGAAGCAAGAAACATATAGTCTATATGGTTTTTGCATGCCTTCCAGGTATGGGCATACAAGACTGTCTCATCAGTGTCGTGTGAACGAGAATGATCCACGCATTCTTAAATGGACATGCTCCCACTCGCCTACGTACTCCCGCATAAGCACGAGGATCACAGAGTTTCTTGAACCAACAGATGAGGAGCTTCGATATATGAATCATATAATGGAACCCCCACGTCCACCAACGCCTTCTCCACCCCCTCCTATAGTTGACGCTGGTGTTGGCCAGGACATTGAGATGACATATGTGACTGTGCATGACCTCGCCCAATAG

Protein sequence

MNPGEDRPRFLNLYRENFQKQNFRSLKEALKGKVESYKRKRDGSRKQETYSLYGFCMPSRYGHTRLSHQCRVNENDPRILKWTCSHSPTYSRISTRITEFLEPTDEELRYMNHIMEPPRPPTPSPPPPIVDAGVGQDIEMTYVTVHDLAQ

Homology

[Close]

BLAST of Lag0035536 vs. NCBI nr
Match: XP_022154965.1 (uncharacterized protein LOC111022110 [Momordica charantia])

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-05
Identity = 43/119 (36.13%), Postives = 62/119 (52.10%), Query Frame = 0


Query: 25  SLKEALKGKVESYKRK-RDGSRKQETYSLYGFCMPSRYGH----TRLSHQCRVNEND--- 84
           SLK ALK KVE+YK+K    S   ETYSLYGF    +       + LS +  +  ND   
Sbjct: 40  SLKNALKDKVEAYKQKVAIDSSHVETYSLYGFPYAFQVWAYETISTLSTRVALRLNDDAI 99

Query: 85  PRILKWTCSHS--------PTYSRISTRITEFLEPTDEELRYMNHIMEPPRPPTPSPPP 128
           PR+L+W+C++S          +  + +++   LE TD E ++M  +M PP  P   P P
Sbjct: 100 PRLLRWSCTYSRAFNVLEREVFENVKSKVVVRLEATDVERQHMARVMHPPVAPVGPPAP 158

The following BLAST results are available for this feature:

BLAST of Lag0035536 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154965.1	3.3e-05	36.13	uncharacterized protein LOC111022110 [Momordica charantia]	[more]

BLAST of Lag0035536 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 20..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0035536.1	Lag0035536.1	mRNA