Lag0035511 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0035511
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RNase H domain-containing protein
Location	chr3: 23123228 .. 23124010 (-)
RNA-Seq Expression	Lag0035511
Synteny	Lag0035511

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACACCATGGACGACGATTACCTTCAAGACATAATCACCGAGCAACATTCCAAACTCCTCGCCGCCAAAACCCTCGTCTCTGACCTCGATTTGGCCTTCCAACTTCAAATACAGGAGGCCATGAATGCCTCTCTCAAGTCTATGCCCTCGATCGAACCATCTCCATCACTTAACAGGGTCGCCCCTGTCTTGGAGTCTAAAGAAACCGACCCTTCTCATGTGGTTTTTGTTTTTTTTTTGTGTCTTTCTCAGATCTGAAAAGGGAGTATGGTTTTGATTTTTTTTTTGCTTAGATTTGCTCTGTGGGTGTTCGGAGGTGGGGGAGATGAAGAAGGGCAGCGACGGCGGTGACGGACTATCGTCGGTGAGAAGGGGAAAGGAGAGGAAAGGATTTGGGGGGGGTATGAGGGAGAGAGACGGTAAAAAAGGGTGGGAAAAGAGATATTGGTAGAGAGAGAAGGGAAACACCGTTTGGTGAAGAAGATGAAGGAACATAGAAGGAGAGAGGAAAACGCCATTGGAGGAGGAAGAGTAGAGAGAGGAAAGTTTCTGAAGTTTTTTTTTTTTTTTTTTTTTTTGTGTAAAGGTGTTCGGAAATGTGGCGATGTTGGCGTCAGTCACAGAAAATCTGACGGCGGGGAAGCTCTAGCGGCGGTGGGAGGAGGCTCCGACGATAGGGGAAGAAGAGGAGAGAATGTGAGGGAGAGATTAGGGTTTCGGTTGGGGTGGGGGAGAAAGAGGAGAGAAGTTGATTTGTTTTTCTTTTTCTTTTTTTAA

mRNA sequence

ATGGCGGACACCATGGACGACGATTACCTTCAAGACATAATCACCGAGCAACATTCCAAACTCCTCGCCGCCAAAACCCTCGTCTCTGACCTCGATTTGGCCTTCCAACTTCAAATACAGGAGGCCATGAATGCCTCTCTCAAGTCTATGCCCTCGATCGAACCATCTCCATCACTTAACAGGGTCGCCCCTGTCTTGGAGTCTAAAGAAACCGACCCTTCTCATGTGGTGGGGGAGATGAAGAAGGGCAGCGACGGCGGTGACGGACTATCGTCGGTGAGAAGGGGAAAGGAGAGGAAAGGATTTGGGGGGGGTGTTCGGAAATGTGGCGATGTTGGCGTCAGTCACAGAAAATCTGACGGCGGGGAAGCTCTAGCGGCGGTGGGAGGAGGCTCCGACGATAGGGGAAGAAGAGGAGAGAATGTGAGGGAGAGATTAGGGTTTCGGTTGGGGTGGGGGAGAAAGAGGAGAGAAGTTGATTTGTTTTTCTTTTTCTTTTTTTAA

Coding sequence (CDS)

ATGGCGGACACCATGGACGACGATTACCTTCAAGACATAATCACCGAGCAACATTCCAAACTCCTCGCCGCCAAAACCCTCGTCTCTGACCTCGATTTGGCCTTCCAACTTCAAATACAGGAGGCCATGAATGCCTCTCTCAAGTCTATGCCCTCGATCGAACCATCTCCATCACTTAACAGGGTCGCCCCTGTCTTGGAGTCTAAAGAAACCGACCCTTCTCATGTGGTGGGGGAGATGAAGAAGGGCAGCGACGGCGGTGACGGACTATCGTCGGTGAGAAGGGGAAAGGAGAGGAAAGGATTTGGGGGGGGTGTTCGGAAATGTGGCGATGTTGGCGTCAGTCACAGAAAATCTGACGGCGGGGAAGCTCTAGCGGCGGTGGGAGGAGGCTCCGACGATAGGGGAAGAAGAGGAGAGAATGTGAGGGAGAGATTAGGGTTTCGGTTGGGGTGGGGGAGAAAGAGGAGAGAAGTTGATTTGTTTTTCTTTTTCTTTTTTTAA

Protein sequence

MADTMDDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLNRVAPVLESKETDPSHVVGEMKKGSDGGDGLSSVRRGKERKGFGGGVRKCGDVGVSHRKSDGGEALAAVGGGSDDRGRRGENVRERLGFRLGWGRKRREVDLFFFFFF

Homology

[Close]

BLAST of Lag0035511 vs. NCBI nr
Match: XP_022157931.1 (uncharacterized protein LOC111024540 [Momordica charantia])

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-17
Identity = 53/72 (73.61%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 1  MADTM-DDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSL 60
          MADTM DDDYLQ++++EQ S+LLAAKTL SDLDLAFQLQ+QEAMNASL S PS +PSPS 
Sbjct: 1  MADTMDDDDYLQEVVSEQRSELLAAKTLFSDLDLAFQLQLQEAMNASLDSKPSTQPSPSR 60

Query: 61 NRVAPVLESKET 72
          NRV P LES+++
Sbjct: 61 NRVVPKLESEDS 72

[Close]

BLAST of Lag0035511 vs. NCBI nr
Match: XP_038893965.1 (uncharacterized protein LOC120082751 [Benincasa hispida])

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-17
Identity = 52/71 (73.24%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 1  MADTMDDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLN 60
          MADTMDDD +QD+IT+Q S+LL+AKTL SDLD AFQLQ+QEAMNASL S PS EPS SLN
Sbjct: 1  MADTMDDDSIQDLITQQRSELLSAKTLFSDLDFAFQLQLQEAMNASLASKPSTEPSSSLN 60

Query: 61 RVAPVLESKET 72
             PVL+S+ET
Sbjct: 61 TAVPVLDSEET 71

[Close]

BLAST of Lag0035511 vs. NCBI nr
Match: KAG7019256.1 (dbl4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 98.2 bits (243), Expect = 7.1e-17
Identity = 51/71 (71.83%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1  MADTMDDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLN 60
          MADT+DDDYLQD+ITEQ S++LAAKTL+SDLDLA+QLQ+QEAMNASL S  S +   ++N
Sbjct: 4  MADTVDDDYLQDLITEQRSEILAAKTLISDLDLAYQLQMQEAMNASLGSKSSSKRPATVN 63

Query: 61 RVAPVLESKET 72
          RV PVLES+ET
Sbjct: 64 RVVPVLESEET 74

[Close]

BLAST of Lag0035511 vs. NCBI nr
Match: XP_022964983.1 (uncharacterized protein LOC111464930 [Cucurbita moschata] >KAG6583501.1 hypothetical protein SDJN03_19433, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.2 bits (243), Expect = 7.1e-17
Identity = 51/71 (71.83%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1  MADTMDDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLN 60
          MADT+DDDYLQD+ITEQ S++LAAKTL+SDLDLA+QLQ+QEAMNASL S  S +   ++N
Sbjct: 1  MADTVDDDYLQDLITEQRSEILAAKTLISDLDLAYQLQMQEAMNASLGSKSSSKGPATVN 60

Query: 61 RVAPVLESKET 72
          RV PVLES+ET
Sbjct: 61 RVVPVLESEET 71

[Close]

BLAST of Lag0035511 vs. NCBI nr
Match: XP_023519052.1 (uncharacterized protein LOC111782521 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-16
Identity = 51/71 (71.83%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1  MADTMDDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLN 60
          MADT+DDDYLQD+ITEQ S++LAAKTL+SDLDLA+QLQ+QEAM+ASL S  S +   S+N
Sbjct: 1  MADTVDDDYLQDLITEQRSEILAAKTLISDLDLAYQLQMQEAMDASLGSKSSSKRPASVN 60

Query: 61 RVAPVLESKET 72
          RV PVLES+ET
Sbjct: 61 RVVPVLESEET 71

The following BLAST results are available for this feature:

BLAST of Lag0035511 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157931.1	1.4e-17	73.61	uncharacterized protein LOC111024540 [Momordica charantia]	[more]
XP_038893965.1	1.4e-17	73.24	uncharacterized protein LOC120082751 [Benincasa hispida]	[more]
KAG7019256.1	7.1e-17	71.83	dbl4, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022964983.1	7.1e-17	71.83	uncharacterized protein LOC111464930 [Cucurbita moschata] >KAG6583501.1 hypothet...	[more]
XP_023519052.1	1.2e-16	71.83	uncharacterized protein LOC111782521 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0035511 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0035511.1	Lag0035511.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0000209	protein polyubiquitination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000151	ubiquitin ligase complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0031624	ubiquitin conjugating enzyme binding
molecular_function	GO:0061630	ubiquitin protein ligase activity