Lag0035482 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0035482
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein of unknown function (DUF793)
Location	chr3: 22421317 .. 22421988 (-)
RNA-Seq Expression	Lag0035482
Synteny	Lag0035482

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAATCGCAGATCTGGGTCTGGGTGAAGAAGAAGAAGAGCACGGATCTGGGTTGTAGCTCGAAAGTGAAGAACATACTCGCTGGAGATCTCGTGTCGGTTGGCTACTCACGAAAGAGGGGAAAAGGAATGAGTTGGAAGCTTGGTAAAAACAGTAAAAGAAGGGAAGAGAGGAAGAGGGAAGAAGAAGAAAAGGGGGAGGAGAGGGAAAAAGAAGAAAAAGGAGAAAAAAGAAAAAATATAGAAGAGGGATGAGGGACCTCCCTCCTCCTCCTCCTCTTCCATTTCTGACGAGGCTCAATTCACGACCCTCCTCATCATGGGTCGCGACCCCTCTCAGATTGTCAAACCCCCCTCGACTGTCTTGTCCCCGAGTTTCTCGAGTGCATAGTAAAGGCTTTGGATATATGTAATGTCGTTCTCCATGGGATTGAATTCATTCGCCAGTTTCAGAAACTCGCCGAAATCGCGATTTCCGCTCTCGAGCAGCGTCTGATTGGAGACGGAAGGGTGAAACAGGCGCGTAGGGCTTTGAATTACTTGATTACGTCCATGGTCGTCGAGGACAAGGATTTCACCAGTAAATCCACTGAGAGAGCTTGGTCTTTCGCCCGTCGCGGTGGTGGCGCTGTCGCTCCCGACACGCATCGCACAAGGACCAAATTGTAG

mRNA sequence

ATGGGGAAATCGCAGATCTGGGTCTGGGTGAAGAAGAAGAAGAGCACGGATCTGGGTTGTAGCTCGAAAGTGAAGAACATACTCGCTGGAGATCTCGTGTCGGTTGGCTACTCACGAAAGAGGGGAAAAGGAATGAGTTGGAAGCTTGGCTCAATTCACGACCCTCCTCATCATGGGTCGCGACCCCTCTCAGATTGTCAAACCCCCCTCGACTGTCTTGTCCCCGAGTTTCTCGAGTGCATAGTAAAGGCTTTGGATATATGTAATGTCGTTCTCCATGGGATTGAATTCATTCGCCAGTTTCAGAAACTCGCCGAAATCGCGATTTCCGCTCTCGAGCAGCGTCTGATTGGAGACGGAAGGGTGAAACAGGCGCGTAGGGCTTTGAATTACTTGATTACGTCCATGGTCGTCGAGGACAAGGATTTCACCAGTAAATCCACTGAGAGAGCTTGGTCTTTCGCCCGTCGCGGTGGTGGCGCTGTCGCTCCCGACACGCATCGCACAAGGACCAAATTGTAG

Coding sequence (CDS)

ATGGGGAAATCGCAGATCTGGGTCTGGGTGAAGAAGAAGAAGAGCACGGATCTGGGTTGTAGCTCGAAAGTGAAGAACATACTCGCTGGAGATCTCGTGTCGGTTGGCTACTCACGAAAGAGGGGAAAAGGAATGAGTTGGAAGCTTGGCTCAATTCACGACCCTCCTCATCATGGGTCGCGACCCCTCTCAGATTGTCAAACCCCCCTCGACTGTCTTGTCCCCGAGTTTCTCGAGTGCATAGTAAAGGCTTTGGATATATGTAATGTCGTTCTCCATGGGATTGAATTCATTCGCCAGTTTCAGAAACTCGCCGAAATCGCGATTTCCGCTCTCGAGCAGCGTCTGATTGGAGACGGAAGGGTGAAACAGGCGCGTAGGGCTTTGAATTACTTGATTACGTCCATGGTCGTCGAGGACAAGGATTTCACCAGTAAATCCACTGAGAGAGCTTGGTCTTTCGCCCGTCGCGGTGGTGGCGCTGTCGCTCCCGACACGCATCGCACAAGGACCAAATTGTAG

Protein sequence

MGKSQIWVWVKKKKSTDLGCSSKVKNILAGDLVSVGYSRKRGKGMSWKLGSIHDPPHHGSRPLSDCQTPLDCLVPEFLECIVKALDICNVVLHGIEFIRQFQKLAEIAISALEQRLIGDGRVKQARRALNYLITSMVVEDKDFTSKSTERAWSFARRGGGAVAPDTHRTRTKL

Homology

[Close]

BLAST of Lag0035482 vs. NCBI nr
Match: XP_022136452.1 (uncharacterized protein LOC111008158 [Momordica charantia])

HSP 1 Score: 157.9 bits (398), Expect = 7.8e-35
Identity = 81/108 (75.00%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 59  GSRPLSDCQTPLDCLVPEFLECIVKALDICNVVLHGIEFIRQFQKLAEIAISALEQRLIG 118
           G  P    + PLD LVPEFL+ +VKALDICN VLHGIE +RQFQKLAEIAISAL QR IG
Sbjct: 90  GRDPSQIVKPPLDRLVPEFLDRVVKALDICNAVLHGIESVRQFQKLAEIAISALHQRPIG 149

Query: 119 DGRVKQARRALNYLITSMVVEDKDFTSKSTERAWSFARRGGGAVAPDT 167
           DG+VK+ARRALN LITSM VEDKDFT+KSTERAWSF RRGGG   P T
Sbjct: 150 DGQVKRARRALNSLITSMAVEDKDFTTKSTERAWSFGRRGGGGPGPAT 197

[Close]

BLAST of Lag0035482 vs. NCBI nr
Match: XP_004146531.1 (uncharacterized protein LOC101212488 [Cucumis sativus] >KGN53351.1 hypothetical protein Csa_014449 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 3.0e-34
Identity = 83/109 (76.15%), Postives = 89/109 (81.65%), Query Frame = 0


Query: 59  GSRPLSDCQTPLDCLVPEFLECIVKALDICNVVLHGIEFIRQFQKLAEIAISALEQRLIG 118
           G  P    + PLD LVPEFL+ +VKALDICN VLHGIE +RQFQKLAEIAISALEQR IG
Sbjct: 90  GRDPSQIVKPPLDRLVPEFLDRVVKALDICNAVLHGIESVRQFQKLAEIAISALEQRPIG 149

Query: 119 DGRVKQARRALNYLITSMVVEDKDFT-SKSTERAWSFARRGGGAVAPDT 167
           DG+VK+ARRALN LITSM VEDKDFT SKSTERAWSF RRGGGA    T
Sbjct: 150 DGQVKRARRALNSLITSMAVEDKDFTNSKSTERAWSFGRRGGGATGTGT 198

[Close]

BLAST of Lag0035482 vs. NCBI nr
Match: KAA0044842.1 (Protein BYPASS-related protein [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 1.9e-33
Identity = 81/103 (78.64%), Postives = 87/103 (84.47%), Query Frame = 0


Query: 59  GSRPLSDCQTPLDCLVPEFLECIVKALDICNVVLHGIEFIRQFQKLAEIAISALEQRLIG 118
           G  P    + PLD LVPEFL+ +VKALDICN VLHGIE +RQFQKLAEIAISALEQR IG
Sbjct: 90  GRDPSQIVKPPLDRLVPEFLDRVVKALDICNAVLHGIESVRQFQKLAEIAISALEQRPIG 149

Query: 119 DGRVKQARRALNYLITSMVVEDKDFT-SKSTERAWSFARRGGG 161
           DG+VK+ARRALN LITSM VEDKDFT SKSTERAWSF RRGGG
Sbjct: 150 DGQVKRARRALNSLITSMAVEDKDFTNSKSTERAWSFGRRGGG 192

[Close]

BLAST of Lag0035482 vs. NCBI nr
Match: XP_008452011.1 (PREDICTED: uncharacterized protein LOC103493146 [Cucumis melo] >TYK16622.1 Protein BYPASS-related protein [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 1.9e-33
Identity = 81/103 (78.64%), Postives = 87/103 (84.47%), Query Frame = 0


Query: 59  GSRPLSDCQTPLDCLVPEFLECIVKALDICNVVLHGIEFIRQFQKLAEIAISALEQRLIG 118
           G  P    + PLD LVPEFL+ +VKALDICN VLHGIE +RQFQKLAEIAISALEQR IG
Sbjct: 90  GRDPSQIVKPPLDRLVPEFLDRVVKALDICNAVLHGIESVRQFQKLAEIAISALEQRPIG 149

Query: 119 DGRVKQARRALNYLITSMVVEDKDFT-SKSTERAWSFARRGGG 161
           DG+VK+ARRALN LITSM VEDKDFT SKSTERAWSF RRGGG
Sbjct: 150 DGQVKRARRALNSLITSMAVEDKDFTNSKSTERAWSFGRRGGG 192

[Close]

BLAST of Lag0035482 vs. NCBI nr
Match: XP_038877957.1 (uncharacterized protein LOC120070173 [Benincasa hispida])

HSP 1 Score: 152.1 bits (383), Expect = 4.3e-33
Identity = 81/109 (74.31%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 59  GSRPLSDCQTPLDCLVPEFLECIVKALDICNVVLHGIEFIRQFQKLAEIAISALEQRLIG 118
           G  P    + PLD LVPEF + +VKALDICN VLHGIE +RQFQKLAEIAISAL+QR IG
Sbjct: 90  GRDPSQIVKPPLDRLVPEFNDRVVKALDICNAVLHGIESVRQFQKLAEIAISALDQRPIG 149

Query: 119 DGRVKQARRALNYLITSMVVEDKDFT-SKSTERAWSFARRGGGAVAPDT 167
           DG+VK+ARRALN LITSM VEDKDFT SKSTERAWSF RRGGG V   T
Sbjct: 150 DGQVKRARRALNSLITSMAVEDKDFTNSKSTERAWSFGRRGGGGVGTGT 198

[Close]

BLAST of Lag0035482 vs. ExPASy Swiss-Prot
Match: Q9CAK4 (Protein ROH1 OS=Arabidopsis thaliana OX=3702 GN=ROH1 PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.6e-22
Identity = 55/115 (47.83%), Postives = 78/115 (67.83%), Query Frame = 0


Query: 59  GSRPLSDCQTPLDCLVPEFLECIVKALDICNVVLHGIEFIRQFQKLAEIAISALEQRLIG 118
           G  P    + P D LVPE L+  +KALDIC  V++GI+ +R +Q+LAEIA++ALEQR +G
Sbjct: 99  GRDPTQISKPPFDRLVPEMLDRSIKALDICTAVVNGIDSVRHYQRLAEIAVTALEQRPLG 158

Query: 119 DGRVKQARRALNYLITSMVVEDKDFTS----------KSTERAWSFARRGGGAVA 164
           DG V++A+RAL  L+ ++ +EDK+  S          K+TER+WSF RR GG+ A
Sbjct: 159 DGNVRRAKRALANLVVALSLEDKENVSGGGGGGGGGNKTTERSWSFGRRSGGSSA 213

The following BLAST results are available for this feature:

BLAST of Lag0035482 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136452.1	7.8e-35	75.00	uncharacterized protein LOC111008158 [Momordica charantia]	[more]
XP_004146531.1	3.0e-34	76.15	uncharacterized protein LOC101212488 [Cucumis sativus] >KGN53351.1 hypothetical ...	[more]
KAA0044842.1	1.9e-33	78.64	Protein BYPASS-related protein [Cucumis melo var. makuwa]	[more]
XP_008452011.1	1.9e-33	78.64	PREDICTED: uncharacterized protein LOC103493146 [Cucumis melo] >TYK16622.1 Prote...	[more]
XP_038877957.1	4.3e-33	74.31	uncharacterized protein LOC120070173 [Benincasa hispida]	[more]

BLAST of Lag0035482 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAK4	1.6e-22	47.83	Protein ROH1 OS=Arabidopsis thaliana OX=3702 GN=ROH1 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008511	Protein BYPASS-related	PFAM	PF05633	BPS1	coord: 67..160 e-value: 7.1E-26 score: 91.1
None	No IPR available	PANTHER	PTHR31509	BPS1-LIKE PROTEIN	coord: 66..162
None	No IPR available	PANTHER	PTHR31509:SF68	OS02G0109200 PROTEIN	coord: 66..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0035482.1	Lag0035482.1	mRNA