Lag0035416 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0035416
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	exosome complex component CSL4
Location	chr3: 21130314 .. 21147509 (-)
RNA-Seq Expression	Lag0035416
Synteny	Lag0035416

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGAAGGCGAGGAAGAGACTGAGTTCGTCACTCCAGGTGAAGTTCTCGGAAAATTTTCGGACTTGAAAGCTGGAAAAGGCGCTTATGTCGCCAACAACACTGTTTATGCTTCTCTTTCTGGTTTCCGCAGCATTATTCCCCCTCCAACCGACTCTTCGGATTTGGTACACTCTTTTACTTCTGTTTACTGTTTTTTTTGGGGGTTTTTTTTGCTTGATCTTTTGATTTTTTTTCCTCTCTCTCTCTCTCATCCTTGTTAGTTGTAATTGCCATTGTTTAGTCTTGTGATGTAGGGAGGTTCAACATCTAATGTGCTTTCCTTCAAACCCTGTTGTAGTTTCTTGGTTATGTGATACTTTCTCAGTTTAATTTTGATGCCTTCTAGCTAAAAGTTCTCCAGAAGACAAGATTTAACCATAAAAAATACCGGGTTAGCAAGGTTCTTTATATAGCATTACACTGTTGTTGGGATGGGATGGGGATTCAAATTTTCGACCTATGGGGAATGTTATCAATGCCTTAATTGTTAGAGCTATGCTCAGGTTGGTGATTAAGGTTCTTATAGTGTTGGATAAGGAGATGCGTAGGACTCTTTCCCTACCAAAGGTTAGCGTGATAATGTTGGAGGAAATTAATACCATAAATATTATGAGATTGCCTTTCCATGGTGAATGTTGCAAAGTTTGGTGCAATCTTAAGAAGAATATCGGTTCAAAGTGCATACTGAATCCTTTCCACCCAGACAAAATGTAGTTGACATGTGGAAGGAGCTTGCTTATTATACATAGTTATAGGATGATTGACGTGGGGGGAATTTTCCTTAAAGTTTGAGGTGTGTGAACTGGGAAGGAACTGCCAAAGACCAAAGAAATGGCAGTAGTGTGTTAGGCCTCCAATTACTCACGTGTACAAAAGAAAGGGCAAAATGGGAAAGGCAGGGAAACGGTTAGAGGAGGAAGGGACCACTGAGAACGTGGGAGTGAGTGTGTGATGTATTTGGGGAGCAAGAATCGAGAGGGAGGGCAGGGAATGTTTTGTGCTTAGGCTGAGAGTGGTCTGAAAGGGAGAGAACTAGCCTCTTGAAAGCTGGGAACCTTGTTCTTGTTCTTCTCTTTTGGATTATCAATCTCAAACGGCTAATAACCCCTCTGTGTATTGAAGAACCACTCAATACAGCAGAGTTGGGTCTATTTCTCTCCATTTTTAGTGTTGTTTGGTGTTGTTTGTGTGTTCTTTTGAGTTTCTTGCAGGTTAAGGGAGTTAGATACCTAACACAGTGGTTGGGCTGGGTAGAGTATTGGTATAATACAACATTTCATATCTCCATTGGCATCAATCCACTCCAGGCAGTCTATGGTTGGTCCCCTCCACCCCTGATCTCTTATGGTGACCAAAGGATAGCCAATTCGACCCTTGATCAACAACTCTTAGATAGGGACATCTAAAGGAAAATCTGAGAATGAGATTGGCACAGGAAAGAATGAAAAATATTGCTGATAGGCATAGGCGGGAAGTTGAATTCGAAGGAGACTTTGTGTTCTTGAAGATCCGTCTTTACCGCTAGGCATCCCTGGCTAAATGAAGGAATGGAAAGCTGTCTCCTAAGTTTTTTGGCCCCTATAGGGTGGAAGAACTAATTGGCAAGGTTTGTTTATCTTCTCCAATTGCCAAACTCAACTTCCATTCACCCTGTCTTTCATGTATCCCAATTGAAGAAGTTCGTTGGCCCTGCTCATTTTGTCCAACCGGATCCTCCACCACTCGCAGAAAATTATGAGTGGCCTACTGAACCTGGTGAGGTACATGGCTACCGAAAGAATGTGCAAATTGGTGAATTGCTGATCAGTGGAAAAATTTGCCTGAGCATGAAGGTACTCAGGAGTCTCTGAGTGAGTTCAAGCGCCACTTTCCGAGTTACCACCTTGAGGACAAGGTGTCTTTGACCCCCGACGGTGATGTTAGGCCACCAATTGTAATTCAATATACTGGGAGGGGTAAAAAGGGGAATAAAGCTCTGGCAAGTTAGTTATTTTGGGGAGGGGACTGGGCGTTGTGGCTGTGGGTAGTATATATCTGTCATTTTCATTTTGAATGCCTTTTTATGCTTTTTGTTGATATCATCTAAATAACTCAAAGAGGAGGGGAGAGATTACCGACCCTCTCTAATTATCCGGGAGTTTTGTACTACCATAAGAGGGATCCTTTTCTCTGAATATATCGCTGTGAGGTTACCTCATAGAGTATTAACCTATTTATTTGGTTTTCTTCCCCTTGCTTTTAAGCACAACTATGTTGTATGAGATATTAACCTATACTTAATACTGGCCATAGAAGCATTGTAATGACTACTTTATTTTCAATATCTGTATGTTCAATTTTTATGTTTACCTGGCCTTGGATGTTGCTTACGTTATGGCTGATTTGCATTGTTAGAGACCAACTGTGGAAGTGACTGGTCATAAGGCCCATGGTGCTGTTCCAGCTCCTGGATCAATTGTCATTGCTCGAGTAAGTTGCTTACTGTTTCATCTGTTTGTCCATGATATTTAAAATTCCATCATTCAAGTCTAGCGCCTGCTGATGTAGGTTATAGCTGCTTCCACTCTTTTTTTTTTAATATTTCCTTATCCTCTTTTAACTTTGCTATAGTAATCCTGTTGGCAAAAGTAATTTTCCATGATTGCAATTGCACCTATGATGTGCTAAGCTCTTAGTCAAGCCATAAGTACTATACACAAAAAGAAGTTGGTGATAGTAGTATAGTATACACAATTGCATCTATGAAGTTGGTGATAGTTGGTTTTTGGAATTCTTTTACTATTTTTTACTGTATTTTGCTACTACTGCTTGAGGCTGCTCATTTTAGTTAGTTTGGTAATTAGATTGAAGTTCATTGGAGGTAGTTAGACCTTAGCTGGTTGTTCATTGGCGGCTTCCTTATTCTTGATGCTGTAGCATAACTGATTGTTTTCAACTTCTAACTATGTATTCCCTTTAGATCTGCTGCGTTTTTTTTAAGGAATAATTGCATTGATGTATGAAATTTACAAAAAGGGGAGTTACCCATGATGGTTACAAAAGACCTTCCCAATTCGTTAAAAGGAAAGTATAGCTATATGAAGAGAAGATATTGGACAATTTACACCAAGATATGTCATAATAAATGACATTATCAAATAACTTATCATCGAAGGATTGTTCTTTCTTCGAGAAGATACGTTGATTTATCTCCTTCCAAAGATGAAAGACCTAAAATAAAGCCCAGGATATGTTCATCCAAAGCAACGTTTTGATCTTCTTAAAATGGTGTCCCACAAAGATATAGGATAGGGAGTCCCTTATGTCTAGAGCGAACACCATGGACCTACCAAAACAATGTAGTATCCTTTCCCAAAACCGTTGAGCGAAGGAGCAGTGGAGGAAAAGGTGGCTCTGAGATTCACTTCCTACCTTACACATAGAACACCAATTTAGAGAGATGGCCATGTATGACATACGTTTTTGTAGGATATCCTTTGTATAGCTCGGTGAGAGATTCCGACAATAGGAATTTAATCTACTTGGGGAAGCCACCTTGCCAACTAGCTTTGGACAATTGAGAATCGGTCAAATTATAGGAGAGAACATATCAACCAATAAGGACCTAGTAGAGAAAAGCCCATTAGATCTGTTGAGTTTGTTTACACAACGCAGATTTGAGATAACTGAAATTAAACGAGTTTATCTTTCCAATTACCTCATCATTTATAATTATGATCAGCATAATGCTTTTTTGGAATTGGAGCCGGAGGAACTGCAAATTGAAGATTTGGCCTCTTTTTTTACCCTTATTTTCTTTTGGTTAAATTATAAATTTGGTCTCTATAGGTTGGGCAAAGTTTCAAGTTGGTCCTTCATGGTTTTAAAAGTTTCACTTTAGTTAGTATGGTTCAAATTTAGTTTCAATTTAGTACTTATGGTTTCAAAAGTTTGATTATATTCTAGCGATGTCTGGTCCCTCGTTAGCTTCTATGTTTTTCTTTGGGTGTCGGTGACAATTTTTTTTTTTTTTTTTTGTAATTATTCAATCTCATTTTACTTGATTGGAGTCCCTTTCTTTAGTGAGGCTCCCTTTTGCAGGTTTGGTTTTTTGGATGCCCTTGTATTCTTTAATTTTTTCTCGATGAAAGTTTTGTTCTTCATAAAATAGTGATGTTGAGGTGACCCTGGGCGCTCGCGCCTAAGATGAGAGGCGAGGTGACCATAGGGTCTTGCTCCTTGTAGGCTGGCTAGGCGAGCAACTTCAAAGAGGCGCTCGCCCAACTACGCCTCCTTGCGCCTGGCATCGCCTGTCGCCTTGACGAAGGCGAGTGCCTCTTTGAATTACCCGTTTTTTTTTAATGGAAGTTAAACAAAAACCTAAACCCATGTAAAAAAGGCCCATGAGAAACTAAAAAGCCATGCAGAGAATCGGTTTTCAGCTGCATCGACTTTTTTTAATTGGCTACAGCTAGCTTTGTCATGCAAAATTGAAAAAACTCTTACGCTGCTCTGAACTTCTCCTTATTTAGACGTTTCTGCTTCTTCACCAATCTTCAACTTCTCCTTATTCGGCTTCTCCTTCAATCCTTCAATCCTTTATATTGTTCATACTCGTTCTTGAGACATTCTTTTTCAATCTTCTCTTTGCTGGTCACTTATCCGTGAGGTGTGAGGTGATGTTTTAGTTTTATTTTGTACTTTTTTTCCAAGTTTTAGATGGGGAGGAGGATGATGATTTTGACATTTGATGTTTTACTTTTAGACTTAGTTTTTGTTCACTCTTAACGTCTTCATGGTGTGTTGGAAGTACTAGAAATTGATTATTGTTTGATGTTTTTGCAATTTTGGTGTTTATACTATTTAGTATTAATTTGTTAGGATTTGACATTTTGTGCAACTATATTTACTATATAAATTTATGCTCTCTCTATATATTATTTATTTATGCATATATTCGTTGCAGCTCGCTTCACTCGGGCATCGCCTTTTGGTCGCCTCTCGCCTTGAGGAGATCAAGGGGCTTGTCACCTTGAGGGAAAACACTATTATAAATAAATAAAAAGTTCTATTTTGTTCTTTATGGTTTAGTCAAACTTCACAAATTGTCTTGTCTTTACTATATGGACAATTTTTTTTCTTTGTTTAGTTGTTCTCTATTTTTATTTTTTTTTGAATGATAGTTGTTCTCTATTTGAATAACCATGTCAGTTGACTATATTAGGGTTTAGGGCTAAGTAAAAAATAAAAGAAAATAGGTGAATTTTTCAATTGGGTAAAACACAATTTAGGAACAACTTCTGAGATTTAACCAAACCATAGGAATGAAATTGAAACTAAGTCCAAATAATAGGGATCAAATTGAACTTTTAAAAGAACAAAATTGAAGCTCAGACCAAACCATGAGAAGACTAAATTTAAACTTTTAAAACCGTGGGACTAAATTGAAACTTTGCCCCAACCACAGGGACTAAATTTATAATTTAACATTTTATTTTCTTGTTTGGTACAAATGTCGGGCGGTTGCCTAGTGAGAGTAGTTAAGGTGTGTGCAAGTTGGCTCAGACCCTCATGGATATTAAAAAAAAAAAAGAAAAAAAAAACAGGGAAAAATTTAGAAAAAAAAGGTTGAGATCAAAAAAAGAGGGAGATAAAAAAAGAAACAAGACTGAAAAAATAGCTTCCTTTTCTAGGAGAATATTACATAATAAAAAAAAATGAAGGAAAGAGAACAGGTAATACCTAACTAATAAACAAAAAGAAAAAAGAAGAAAAGATAAGAAAACGAAAGAGAAAGAAGAAAAGAAAAGAAGGGTCAAATCCTTTTTGCTGCTGGAGTGTTTTTGTTGCAGTCACCTCACTGCAGGTTTTTTTTGGATTGTCCAGTGAAAACAAATAGAGGATACCTTTTGGTATGGCTTTGGTTGCTTTTTAATGATAAAACAACAAGGCTGTTGTTTTAAAATAATACAACAGACGGTTATAATTAATCCTTTTTCCTTTTTGTGTACTACGAACTGAGGCTTATGCCTTTTAAGCCTCAAGGGTGTAAGCCTCCATTGAATTCTATTTGCTATGATTTTTCTTTTGACTCTTAAGTTGGTAGTTTCCCCCCTGTTTTGCTATCCGTTTTGATTGATGATTAGATTATTATTCTATGGATATCTCAGCCATTATTTCTTATCATTCTTTTCCATTAATTGTAGGTCACAAAAGTAATGTCTAGAATGGCATCAGCTGATATCATGTGTGTTGGTCCAAAGTCTGTGAAGGAAAAGTTTACTGGAATTATAAGGTTTGAAACGTTCCTTTACGAAGCTTTTATTCATTCAGTTTTTTTTTAAACATATTACTTTCTTTGGTGTAGAAAGCTCTTCTACCGTGTTTTATTTTTTTAATATATATTTTTCATTTTCTTGACAACTTTTACACTCTCTTAATAATTTCTGTTCCATGGAAATCAAATAATTAAATTTTATATAGATTAGGACAAAAGTTATGTTGATGGAAACATTGTTATAGAAAGTCTAAAAAATATGCACCTGTTTTGTGCCTAGGCTATGAACCAATATTTTCTAAAAAATATGCACCTGTTTTGTGCCTAGGCTATGTAAAAATTAGATCTATTTTACTTCATATTTATCCTCTCTCTATTTCCTCTTTCTCCTCCTTCCACTCTCCTGCTTCCTACCTCTCTTCCTCTCTGTTTAATCAATCACACATATCTGGGTGTCAATTGCTTTCTTATGTGCAGCTAAAAGGTCATTATTTTAGTGGGAATGTAGGATTCTAGTGCTCAGTTTGCTTGGGAATCACAATTTTTAGGTTGAATTTCATTTTCCGATGGATGGGTTCGTTCATTAGAGGTTTAGAGTTTGAATTTGCTTGAAAAGTTCTAAGGTTTTTTGTTTCTTCATCTGATGAGAGTGAGAGAGTTCAGATTCAGGTTCCTTATACAATCATCATCCCAACTCGAAGCTTAAAATCATTGCTGCAAATTGACGATTCATTTCATTACATTACACTGGATATTCATCAAGGTTGGTAGAAATGGATCTTACAACGCGATCTTTCGAAGGAAAAAAACATAACAAGAAGAAGTCGAACAGGGTCGAGGCTGAAAACGATCAAATTCTTCGAAATTGGGGGCAAATTTCTTGAACTTCAATTGGAGCGCTGGTTTTTGTCTGGAATTGACTTGTTGTAGTGGCCGCCATTAGAGATGGTTCTGGAAGTTCTTCTTCCCTGGTCACTGGTGTTCGAATTGGAAAGGTGGAAGCTTCCATCTCTTGGCCTCTATTTTTCCAGGAGAGAGAAAAAAGAAATATAAGATATAAATGGATTAAAATAGATCCCATTTTTACCTTTATGATAGGTGGAGGAGGGTTTGATTTTTACATTTAAGTTAAAGGGTTTAATTTTTACTATGAGAAAGTTTAGAGGTCCAATTTTTACACTTTTGAAAGTACGAGGGTTTAATTTTTATACTTGAAACTTTAGGGGTGTAATTGTTACAACTATCGTACTTTAAGGGTGTTTGCAATTTGCCTTTTTTTTTTTTTAATAAATTAGGATTAAATTAAGTATAACAAATTTAGAAAATATTGGTTCATTTCCTTCATTTGACCTCTCTTGAGGCATGCAAGTATGAGGTACATGAAATAATACTAAACTAAATTCAATTTGCAAGAGACTTTATACCCTGCCATGTGCTACAATCACAAGTTTATCTTCTTGGTTCAAACATACTGTTATGACAGAAAACGTAAATCAACGAACCAAGAACGAAAGGGAGAAGAAACAACACAGAATTTACGTGGTTCACTAATGGTGTGTTAGCTACATTCACGGGCAGAGGGAGAGAACGATCTTATTAGTGAGGAGTAAAACGTATGCAAATTACAAAGATTAGGACATAATAGGTTAAGAGGGTTTATATATAGTACCACTCTTAACCCTAACATAATAGGCCCAAAATAAAAGCCCAAAACGAAAATAACATATCTAATTTCTATACATAATTTAGCTTGGGGGGTTGCCCACCCCCGTATTTGGTCATTCAGAGCGCTTCATAACAAATTCAAGGCATATCAACACATACTATTCACCAAAGGCATAACAAGTCTCTATTCACCTAGGAAGATCCTTCTTGTTTTGATTTTGATGGAGAATCAAATGTTAGTAGTGTGGAGTCAAATTTTCAAATTCTAGAATTAGAGTTGGTTGATTAGGTTGAAGACAATTCATTTGTTGAAGCATTTGAAAATCTATTTGAAGACAATGAACAAGATGTCGATAATTTCAAGGGAGTAGTTTCTCTAGTGGTTTCCCCTCAAATCCCAGCCAAATTTTCTTCTCTTATTGAGTTATGTGGCTTACAGATGCAGGCAATTCTTAATTTGTCTCTGACAGTTAAAGCTCTTTAGTGTTTTTCTCGTTAGCTCAGTTTTTTAATTTCTCTCAGGGTTTAATCTTTTCAAGTTGGGCTCTCGTCAGATTTCATTGGTGCAGTTTCCATTAGTGGTGGAGTTTTTTCGGAAATCTTCCTTTTCCTTGCTTCCTTTTCAATTGGTCTCTTCAGTCGCTTGGTGGTTTTGATCTCTCCTCCGATTTGGATCAACTTGCTGTTTGTTTTTTTTGTTGGTTTTTCAGTTGCAGCCAGTCGGCCTTTAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGGTTCTCTTAGTTCTCTAGTGGTTTTCTTTTCTAGTTTTTTTTTTCTTTGGTTTGTATCTTCTTCTTTCCTTTATGGTGTTTGTAATTTTGAGCATTAGTCTCTTTTCATTCTATCAATGAAAAGTTTTGTTTCTTGTTTAAAAAAAAATACTAAACTAAATTCATTAAGGGCCATGGAAAAAAAATAAAGGGCTTAGAGGGAATGGGTTCAATCCATGATGGCCACCTACCTAGGATTTAATATCCTACGTGTTTCTTTGACAACCAAATGTAGTAGGGTCAGACGGTTGTCCTGTGAGACTAGTCGAGGTGCGCGTAAGCTGGCTCGGACACTCATGGATATCAAAAGAAAAAAAAAAAAAATTAACTAAATTGCAAAAAAAATTAACTAAATTGCAAAATATAGAGTGCTAAAAATCTAATGATTGGAACTGAAGATGAAAATTTAATAGGGATTATGGATTTTAAGTTTTAGGTCTTTGCAGTGTGATTTTGTAGTTTACTTCTAGGATTTCGTGAACCTTGTAGTTGAACTTTATTTGTCTTTAATAGTCGATCCTGCTTCACTCCAAATGTTTTTGACTAAAAGATATTTTTCGAGGAAGTTCAATGTCCTTGATCATAGGTGTTCTCAAAGTTAATGTAACGCCCCAGGTTTTTCAACCTCTAGCCTAGAGACGCTACTACAACTCTAAACCCTTAGCTAGGAATCTGAACCACTTTAAAACCGAGCGTACCGAAAATTTCGGCAGCATAACGGCGTAAAATGGCCTGAACCAATTTTCACAACACCTGATAAAGTCATTTTAACACTGCTAATCATGCATAAGCCAAACTCCACCAAACTACAGTCAAATTTCACAACCTATCTCCTCTAGACGAGACAGAAACTCGCAACAACATACAATAACCAAAAACCATGCAGCGGAATCATAAAGACATTCTATTAACAAAGGAGCTAGTCCACTAGCTATACATTTTATTAAACTCAACCAAACTATCCATTCTAGTTTATAAACTCGAAAACAAGCCATTCTCCAGCTAACTTATTACAACACTAGGAAAACATATCAACACGGAAACTAACACACTAGGAATCTTTCCTCGCAGTTCTCCTCCTCGCCACCAAGGTCCGGATCATCCTCGATACCTGCAACATCTAAAATGTTTGGGGGAAGGTGGGGAAGGGGGTATCAGTACAACCGTGGTACTGGTAAGCAGCTCATACTTACCAAACCGCAAACAAACAACCAATACAAACATCATGCTCGGCACACGCATCCAACATGCTTTCACAACCACGAACAAGCATCATGCTTATGCAACCACAGATATCCAACAGACTATTAAGTCATACACTAGCAATATGCCTAAAACCACAAACTTGTGCAAATGCAACACACGCACTAAACTCCACATGATTTCCGCGTCATGCTCCGCTAACTACATGATTTCCGCGTCATACTTCGCTACACATGAATTCCGCGCCATGTGCTGCGCTACTTACATGATTTCCGCGTCATGCTCCGCTACACATGAATTCCGCGCCATGTGCTGCGCTACTTACATGATTTCCGCGTCATGCTCCGCTACACATGAATTCCGCACCATGTGCTGTGCTACTTACATGATTTCCGCGTCATGCTCCGCACCTACCCCACATGAATTCCGCGCCATGTGTTGCGCCACTCTTACGTGATTTCCACGTCACGCTCCGCACTCACAACCCACGTGATTTCCGCGTCACGCTCCGCTACACATGAATTCCGCACCATGTGCTGTGCCTCACACCCGACTCATGCTACACATCCCCCATGCAACATGCAAGCCAGACTCAACATGCTTGACTCAACAGTCACTAAGCCTAAGACAAGTACCTATCATGCTTGTACTTCTTAAGCGTACACGTCTCAAGCAATGCAATAAACACAATCCAAGTTTAACATAACAATTACAATGTTCACAAGTGTATACATAATATTTCATTCTCAGCATATATATAAGGAAAGCGGATAACAAACAAACATGCTTCAGGCAGTCAAACAAGTTTAGTAAGTAGAAACTACTTACCGAAGACTTTTACAAACCAACGCTAGCTGGAATGGCACGACACGCTCCCAAAACGAGCTTCCGGCTACAAACAAGCTACCAACTATTAAAGGAAGTCTATACTAAAGAAAAGCACCCTAAAAACATGCTGCTAAGGGCGAGACCGAACCAATAACGGTTTGTTTTCCTTGCTGGACAACATCTAAACATAACCCGAATTGAGAACCCAACACCATTAAACCATGGGCAACCACGTTTAAAGCGTTACGGGTGGTGGGTATTTGTTAGTTGACGATATTAAGGCTATTCAGCCACTGGACAACAAGCAACAACCACCTAAAACGCACGAACGACATTCTACAGGCTCCTAAAGCTCAGGCAATGCACTTAAGGCCTCGATAACTAATGAGACTTGGCTTAGCATGATTTTTAAGCTACGGATAGCAAGTAAAAGCTCGCTTAAACCATGCTTTAAGAACCTATTAAGGGTCGGGCCAAGCTATATAGAAGAAGAGATTAAATGGGCATTGATGAACTATAAGAATTTAACCAAAATAGCCATGATACCTCATTTAAAAACATAAACTATGACCTATAACGATTGGGGCGACACTTAAGAGCCTAGATATGCAATGAGCATCAACTAACACATGCTTCTAAGGCTTGAATAACTATTGGGCAGTGATCTAAAACATGCTTTAAAGCTAGAACAACTAAAGGGGCAGCAAGAAACCTTACCAAACGGACTCGCTTTCACGAAAGGCGGGTTATTCTAACCTCTAACAACGTGTTAGAACGCTCCTTGGGCAATGGGTATCCAAGCTGAAGTGTTTCGAACCTTATCGAACACTTAGACGGCGCCGCAGAACAGAAAATCAATGCTAATATTAAAATTTCAGCACCTAAACACTATGGGTAATTAATCTTAACACCATACAAGCATGGGTAAGGGATTAGACTTACTGGAAACGCCAAACGACACCAACAACAGCCGAGACGTTCCTGGACAGAGGCGGAATCGACTGAAACGGGAACGACAGGGCTCCGAATCGCTTGACACGCGAGATCTAACAACATTGAACGAAGAGAAGCTTAGATCGGGCCTCAAAACAACCAAGAACAAGAGATAGGAAGATTACCCACGGGTTTTAAGGCTGAAAAACGCAAAGGAAGAAGAGACCCACGAGTCTTTACCTTCACAGTGAAAAACCCACAAGAAACGGGGCTTGGCCGAACCACAGAGGGAGGAATAACCCCGCACGAGAGGCTGAGCGGCGGTAGCGGGATGACGAGAACCCCACGGTCGGCAGCTTCCACGCGAAAACCCGAGAGAGGGAGAGAGATTCGCGAAGAGAACAGCGCGGAGGAGACCCACGCGATGAGGCGGCGGCACGACGAGCTCCGACGGCGTCGCTGAACAGCGTGCAAGGCGGCGGCTGGGAAGACAGCGGCGCGGCTGAAGGGAGGGTGGGTTGCGCGACTCCACAGCGGCGGCGACGGCAACACGAACTCCGGCGGCTGCTGAAGCTCACGATTGGGGCTGCCTCACGTGAGATTGAGAGAAAGAGATGGAGAGAGAGAGCTTCTAGGGCTTCTTTTTTTTTAATCCTTATTAATTCCTTTTTCTTTTTCTTTAAACCCATTAAGCCCAAAAATAGGGACTCAAGAATAGGAACTCCATTAATTCAGCGTGAATATTTCAACGCTTATACCAACCTTGTTACAACGGCCAACCAATTAAATCAAGCTTTAGGGAAGGGAAATAAATTAATATAACATATAATAATTTCCCAAACACCTTAGTATATAATTAAATCCCTAAGTGCAAGCCAAAAATAGAATTTATATCCATCTTGACTATTCATGGAATTTAATTAACACCAGCAAGGCACGGGGCGTCACAGTTAATCTCAAAGCTCCTGCCTTGTTACAAATTTTGAAACCCATCTTGATTAGCAACCACAGCTGCATCATTGCCTTTCCTACTTATCAAATATCTCTTTATGTATAAACATATTAATAAGAACTTAAGAAGCACGGACATGGATACAACACGACAATAAAATGACGTAACATCAGTTTCTAAAAAAATTGACATGGAGTTGGGATGTTTTTTTTAATATATCAACTCGACATTGATATATTGAATACTTCAAAATAAATAAAACATATAAATTTAACATTCAAAATTGGGATGTGCTTGTGGTGAGTGGTGTAGACGTTCCCTCATGATTTCATTTTAAGTCTTTCAGATGGGTTTATAGGGCTGGTCATGATGGGCTTTATGGGTTGGATAGTGGGCAAAGTAATGGGCTGGGTTAGTGTCCACGTGTGTCCTCATTTCCAGATATGTCCCATGTGTGTTCAAAATAAAAGGAACATGTGGAATGGGGTGCATAAGGATGGAGTGGGCAAAGTAATGGGCTGGGTTAGTGTCCACGTGTGTCCTCATGTCCAGATGTGTCCCATGTGTGTTCAAAATAAAAGGAACATGTGGAATGGGTGCATAAGGATGTTGTGTCAGCTTGGAATACAATCATGACGTTGAAAGTACCAGAGGTTCCTAAAGACATACTGCCAGAAAAGATTCCTTGACCAATTGGGTAGATCAAGAAAATAGTAGCAGCAATTGAAGAGGAGCTTAATATGAAACATCAATCCAAGGACGCATACCTAGACAGAAACTAAGTTCCCACTCAACCCATGTAACATGCTACACCAAATAAGAAGTGTAGAACAATTAGATCATAAGGACCACCATTGTATAACCATTCATCAACTGAAGCTGCTTCGCAGTGAACATTTTTTCGTGAGTTGGACATGTGTTTGGAGCATGCCAAACATATGTCTATCTGACATGAGCACTTTATAAAAAATAGTGGTCCCTGCTTCATAGGGAACAACCATTCGTATATCTTGAGATAAATCTTGTACGAGCTAGAAACGATAAATGAATGGGCTACAATCATTCATTTTACAAACATCACTCTTCTTGAGTGCTAGGAAACCTTAGATTTCATTTGGATAAATGATAAATCAATAACCTCCCTCGTGGAATTTTCAAGGAACCTTTTGTGAGATCTTCCTTAACAACATCCCCATTATCCTAAAACAGGCACCGGTGAACTTGAATGCAAGTCTTTTTTTCTCTACGAAACCTTGATTTGTCATTTTAAAAAAAATGATAGCCTCCTTGGACGTTGGTATCCCCTTGTTGGTGATAAACCCTGATTATTAATGTATAGTAGGAAATGTGTAGAGGGACTACGACTATTTCTCTGTGATGTAACTATGGGGCCCTTTGTAACTAAGTTGTGATTGGGAGAGGGCACATCTAGAGTGTATATAGGAAACTTTTGTATAGGTGAGAAGTACGTTTTTAGCTGTTGTAAGTTTGAAATAAGGAGATGTAGAACCTTGAAAATTTCCGTAGGTTTTTCTTTTTGAAGCTCTTTGAATCAGGTGGATTCTCTATTGGAAGTGGTATAAGAGCTATTGCAGTTTTGGAATGGTAGCTAATTAAATATCGAATCAAGGTTTTGGTGTATAGTTGAAGAGAAGATTGAGAAGTTGGGGTAGATTCGAGAAGTGTTCCACAGATAACTTGGTGGTAAAGAAGTTGGAATGTATTTGGTATGCAAAGGATTGATAAAGGAGGATCATGGGAAGGGGGATTTGGGGTGGTCCTCATCAGGGCGGTTGAAGGAGAGAGTAGTGGAGGCTGTGGATTCAGAGAAAACAGAGGGAATAGTATCGAATGTGTGCTTGAGAAAACTGGAGATCTCCATCTTTAGTGGTATCAATTTAGATGGTGGCTATGGCTACATGGTATATTGATTGAAGCAATACTTTGTAGTGGGTCTCTTAATGACGGCTAAGAATTTGGAAGCTGCTGTGTTATGTTTGAAGGAAAACCTCTCTGTGGCATCATGATAGGAAATGTATTAGGATAGAATTAGAAATGTTAATTAGGGTATTAAGGGTATTTGAAGGAAAGCCTCTCTGTGGCATCATGATAGGAATTGTATTAGGATAGAATTAGAAATGTTATTAGGGTATTAAGGGTATTCTAGTAATTTGCTGCGGAGTTTGTTAAGAGAGTTTTGTTATAAATAGAGTGGTTAGAAAGGATGAAGGTTGGAATTATGCAGTGGCTTTAGTCTTGAATAGTTGGGGAGGTTCCAAGTACCTTGAATACTTGAGGAGTTATATTGTAATCCTATTTGGTTCCTATCACATCAATGGACAGATGGGCAAAGATTGATAACGAGCTAGTATTGCCATCCGAGTCTCCAACCATTCCCTTCGGGAGTTACATGAATGTGGGGTGTGCCAAACAAGCAAGGTGTTTTTGGAAAAAATAAGAAAATAGAAGGAAGAGATGGAAGGAAATCATTCACGTTACATTCTTTTCAGAGGTGTAAATTTTCTTATAATGATGGAGGTGGAAAATATGAAGGCCCGTTTGATAACAATTTGGTTTTTGGTTCTTGAAAATTAAGCTTATAAACACTGCTATTCATCTACAAGTTTCTTTGTTTTCTTAATACCTTCTTCCCATATTTTCAAAAACCAAGCCAATTTTTTAAAACTAAAAAAAGTAGTTTTCAAAAACTTGTTTTTGTTTTTGGAATTTGGCTAGGAAATCAAATGTTTCATTGACAAAGATGAAAACCATGGTAAGGAAATAGGGAGAAAACATACATAATTTTCAAAAACCAAAAACCAAAAACCAAATGGTTATCGAAGGGGGCCGAAATGTTTTTGTTTTTGGTATTTCATCTTGTTACAATGGTGTAATTGAATAATTGAATCAACTTAAAATGGAAAAACTCTTTTTATCTATAGGAGGAAGGCTATGCTTATCCGATCCATTTTTGTCACGAGAAAGCCTTTGTTACACTGCTTTGTCAATCAGTGTTATATTATCTGTCTTTTATTTGAAATGTCTTTTAATCTATTCTGTTTGGGAAATATTTTACATTAGATTATCATTCATGCTTTCTGTCTTAAATCGTTTCTGTAGGCAACAAGACGTCCGGGCAACGGAGATTGATAAAGTAGATATGCATTTGTCATTTCGTCCTGGTGACATTGTCAAAGCTCTTGTTGTATCCTTTCTGCTTGAATTCCCTCTGTTGCATGTCCATAAAGCATGCAAAAGGACACATTTAGTACATTTCTGGTCTAGAATTCTTCTCCATTGTTTCTTGTTCAAAAAAAAGAAAAAACTTCTCCACTTATCCCATAAACTAGAATCATAAGAAACCAACTATATATATCAGTTGTTTGTCAAATTATATTAATGATCCCATGGGGATGTGGCCAAAAGTAGGAAAATTAAGAAATTGCATCATGATAATTGAAATGTTACCAGGAGTCCATGCATATCATCCTCAATTTTTCACTGGCAAATTACATTTCAATATCTTTCCTACTCAAGGTTTCTTATAGGAAACAGGAATTAGCAAGCAAGAAACTTTGTTTTCTGGATGAGACAATTTTATTTCATCCTTCTGCTGTTAGATTTAGTTCTTCATTGGTCACACTAAAAAAATCTTCTTGGAGGTTTTGATTTGAGTGTAATTCTTGCCACAAATTTCCTTAACCTAAGTTCTCTCTGAAAGCTTTCTCTCGGAGATGCAAGGGCCTATCATTTATCAACTGCAAAAAACGAACTTGGCGTTGTCTCTGCAGAAAGTACAGCAGGTAAAGACTAGGGTACTTTTGTGAAGCCTAAAGAGTTATCTGTTTGCTTTATGACATTTAAAGTAGTCTATTTAAAGTAGTCAATAGTGTTGTGTGGGATATGTGAGTATTTTTTTCTATAATTATCTTTCAAATTCAAACAAATAGGGTAACAAATCGATCATTAAAAGTGGAGTTCGGCTTGATCATGAAAGAGCTTGAGCCATAGATGTCCAACTATTTGAACATATGCATATGCATGTGACCTTAAATGTTCCAAAAGGAAAAAACAAATCAACCAGAAATATCAATCTCAATGGTTATTCAAGTTTAAGGTTCAATTTGATGAAATGAAGACATTAATTAAGTATAGCAATATAACGTAAATTCTTTAGAGCATTTTAATAGTTCACTTTGTTATGTTATTACTTGATTATGAATGAATATTGATCCCCGTAAAGTACGCCTCTTATTCCAAAATTCCAACTTTTACTACGATCGAATACATTCTATTTACCTTGGACTTGCTATACTTGCTTTTTCGAATTATATGAAGCTAGTCTTGTGTACTTAGTTCCTCATTTGAAAAGACTTGGTTGTAATCCTTTATTATGGATTGAATGTTATTTTAGGTGCAGTAATGGTTCCCATAAGTTGGACAGAAATGCAGTGTCCATTAACAGGACAAATTCAGCAAAGAAAAGTTGCCAAAGTTGGAGGATCATGA

mRNA sequence

ATGAAAGAAGGCGAGGAAGAGACTGAGTTCGTCACTCCAGGTGAAGTTCTCGGAAAATTTTCGGACTTGAAAGCTGGAAAAGGCGCTTATGTCGCCAACAACACTGTTTATGCTTCTCTTTCTGGTTTCCGCAGCATTATTCCCCCTCCAACCGACTCTTCGGATTTGAGACCAACTGTGGAAGTGACTGGTCATAAGGCCCATGGTGCTGTTCCAGCTCCTGGATCAATTGTCATTGCTCGAGTCACAAAAGTAATGTCTAGAATGGCATCAGCTGATATCATGTGTGTTGGTCCAAAGTCTGTGAAGGAAAAGTTTACTGGAATTATAAGGCAACAAGACGTCCGGGCAACGGAGATTGATAAAGTAGATATGCATTTGTCATTTCGTCCTGGTGACATTGTCAAAGCTCTTGTTCTTTCTCTCGGAGATGCAAGGGCCTATCATTTATCAACTGCAAAAAACGAACTTGGCGTTGTCTCTGCAGAAAGTACAGCAGGTGCAGTAATGGTTCCCATAAGTTGGACAGAAATGCAGTGTCCATTAACAGGACAAATTCAGCAAAGAAAAGTTGCCAAAGTTGGAGGATCATGA

Coding sequence (CDS)

ATGAAAGAAGGCGAGGAAGAGACTGAGTTCGTCACTCCAGGTGAAGTTCTCGGAAAATTTTCGGACTTGAAAGCTGGAAAAGGCGCTTATGTCGCCAACAACACTGTTTATGCTTCTCTTTCTGGTTTCCGCAGCATTATTCCCCCTCCAACCGACTCTTCGGATTTGAGACCAACTGTGGAAGTGACTGGTCATAAGGCCCATGGTGCTGTTCCAGCTCCTGGATCAATTGTCATTGCTCGAGTCACAAAAGTAATGTCTAGAATGGCATCAGCTGATATCATGTGTGTTGGTCCAAAGTCTGTGAAGGAAAAGTTTACTGGAATTATAAGGCAACAAGACGTCCGGGCAACGGAGATTGATAAAGTAGATATGCATTTGTCATTTCGTCCTGGTGACATTGTCAAAGCTCTTGTTCTTTCTCTCGGAGATGCAAGGGCCTATCATTTATCAACTGCAAAAAACGAACTTGGCGTTGTCTCTGCAGAAAGTACAGCAGGTGCAGTAATGGTTCCCATAAGTTGGACAGAAATGCAGTGTCCATTAACAGGACAAATTCAGCAAAGAAAAGTTGCCAAAGTTGGAGGATCATGA

Protein sequence

MKEGEEETEFVTPGEVLGKFSDLKAGKGAYVANNTVYASLSGFRSIIPPPTDSSDLRPTVEVTGHKAHGAVPAPGSIVIARVTKVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQCPLTGQIQQRKVAKVGGS

Homology

[Close]

BLAST of Lag0035416 vs. NCBI nr
Match: KAG7020862.1 (Exosome complex component CSL4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 371.7 bits (953), Expect = 3.9e-99
Identity = 189/197 (95.94%), Postives = 192/197 (97.46%), Query Frame = 0


Query: 1   MKEGEEETEFVTPGEVLGKFSDLKAGKGAYVANNTVYASLSGFRSIIPPPTDSSDLRPTV 60
           MKEGEEETEFVTPGEVLGKFSD+K GKGAYVANNTVYASLSGFR II PPTDSSD RPTV
Sbjct: 1   MKEGEEETEFVTPGEVLGKFSDMKPGKGAYVANNTVYASLSGFRRIISPPTDSSDSRPTV 60

Query: 61  EVTGHKAHGAVPAPGSIVIARVTKVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEI 120
           EVTGHKAHGAVPAPGSIVIARVTKVM RMASADIMCVGPKSVKEKF+G+IRQQDVRATEI
Sbjct: 61  EVTGHKAHGAVPAPGSIVIARVTKVMPRMASADIMCVGPKSVKEKFSGVIRQQDVRATEI 120

Query: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 180
           DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC
Sbjct: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 180

Query: 181 PLTGQIQQRKVAKVGGS 198
           PLTGQIQQRKVAKVGGS
Sbjct: 181 PLTGQIQQRKVAKVGGS 197

[Close]

BLAST of Lag0035416 vs. NCBI nr
Match: XP_023530831.1 (exosome complex component CSL4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 371.7 bits (953), Expect = 3.9e-99
Identity = 189/197 (95.94%), Postives = 192/197 (97.46%), Query Frame = 0


Query: 1   MKEGEEETEFVTPGEVLGKFSDLKAGKGAYVANNTVYASLSGFRSIIPPPTDSSDLRPTV 60
           MKEGEEETEFVTPGEVLGKFSD+K GKGAYVANNTVYASLSGFR II PPTDSSD RPTV
Sbjct: 3   MKEGEEETEFVTPGEVLGKFSDMKPGKGAYVANNTVYASLSGFRRIISPPTDSSDSRPTV 62

Query: 61  EVTGHKAHGAVPAPGSIVIARVTKVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEI 120
           EVTGHKAHGAVPAPGSIVIARVTKVM RMASADIMCVGPKSVKEKF+G+IRQQDVRATEI
Sbjct: 63  EVTGHKAHGAVPAPGSIVIARVTKVMPRMASADIMCVGPKSVKEKFSGVIRQQDVRATEI 122

Query: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 180
           DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC
Sbjct: 123 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 182

Query: 181 PLTGQIQQRKVAKVGGS 198
           PLTGQIQQRKVAKVGGS
Sbjct: 183 PLTGQIQQRKVAKVGGS 199

[Close]

BLAST of Lag0035416 vs. NCBI nr
Match: XP_022934020.1 (exosome complex component CSL4 [Cucurbita moschata])

HSP 1 Score: 369.4 bits (947), Expect = 1.9e-98
Identity = 187/197 (94.92%), Postives = 191/197 (96.95%), Query Frame = 0


Query: 1   MKEGEEETEFVTPGEVLGKFSDLKAGKGAYVANNTVYASLSGFRSIIPPPTDSSDLRPTV 60
           MKEGEEETEFVTPGEVLGKFSD+K GKGAYVANNTVYASLSGFR II PPTDSSD RPTV
Sbjct: 1   MKEGEEETEFVTPGEVLGKFSDMKPGKGAYVANNTVYASLSGFRRIISPPTDSSDSRPTV 60

Query: 61  EVTGHKAHGAVPAPGSIVIARVTKVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEI 120
           EVTGHKAHGAVPAPGSIV ARVTKVM RMASADIMCVGPKSVKEKF+G+IRQQDVRATEI
Sbjct: 61  EVTGHKAHGAVPAPGSIVTARVTKVMPRMASADIMCVGPKSVKEKFSGVIRQQDVRATEI 120

Query: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 180
           DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVM+PISWTEMQC
Sbjct: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMIPISWTEMQC 180

Query: 181 PLTGQIQQRKVAKVGGS 198
           PLTGQIQQRKVAKVGGS
Sbjct: 181 PLTGQIQQRKVAKVGGS 197

[Close]

BLAST of Lag0035416 vs. NCBI nr
Match: XP_022974279.1 (exosome complex component CSL4 [Cucurbita maxima])

HSP 1 Score: 369.0 bits (946), Expect = 2.5e-98
Identity = 188/197 (95.43%), Postives = 191/197 (96.95%), Query Frame = 0


Query: 1   MKEGEEETEFVTPGEVLGKFSDLKAGKGAYVANNTVYASLSGFRSIIPPPTDSSDLRPTV 60
           MK GEEETEFVTPGEVLGKFSD+K GKGAYVANNTVYASLSGFR II PPTDSSD RPTV
Sbjct: 5   MKVGEEETEFVTPGEVLGKFSDMKPGKGAYVANNTVYASLSGFRRIISPPTDSSDSRPTV 64

Query: 61  EVTGHKAHGAVPAPGSIVIARVTKVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEI 120
           EVTGHKAHGAVPAPGSIVIARVTKVM RMASADIMCVGPKSVKEKF+G+IRQQDVRATEI
Sbjct: 65  EVTGHKAHGAVPAPGSIVIARVTKVMPRMASADIMCVGPKSVKEKFSGVIRQQDVRATEI 124

Query: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 180
           DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC
Sbjct: 125 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 184

Query: 181 PLTGQIQQRKVAKVGGS 198
           PLTGQIQQRKVAKVGGS
Sbjct: 185 PLTGQIQQRKVAKVGGS 201

[Close]

BLAST of Lag0035416 vs. NCBI nr
Match: KAG6588300.1 (Bifunctional TH2 protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 363.6 bits (932), Expect = 1.1e-96
Identity = 185/193 (95.85%), Postives = 188/193 (97.41%), Query Frame = 0


Query: 1   MKEGEEETEFVTPGEVLGKFSDLKAGKGAYVANNTVYASLSGFRSIIPPPTDSSDLRPTV 60
           MKEGEEETEFVTPGEVLGKFSD+K GKGAYVANNTVYASLSGFR II PPTDSSD RPTV
Sbjct: 1   MKEGEEETEFVTPGEVLGKFSDMKPGKGAYVANNTVYASLSGFRRIISPPTDSSDSRPTV 60

Query: 61  EVTGHKAHGAVPAPGSIVIARVTKVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEI 120
           EVTGHKAHGAVPAPGSIVIARVTKVM RMASADIMCVGPKSVKEKF+G+IRQQDVRATEI
Sbjct: 61  EVTGHKAHGAVPAPGSIVIARVTKVMPRMASADIMCVGPKSVKEKFSGVIRQQDVRATEI 120

Query: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 180
           DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC
Sbjct: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 180

Query: 181 PLTGQIQQRKVAK 194
           PLTGQIQQRKVAK
Sbjct: 181 PLTGQIQQRKVAK 193

[Close]

BLAST of Lag0035416 vs. ExPASy Swiss-Prot
Match: Q9Y3B2 (Exosome complex component CSL4 OS=Homo sapiens OX=9606 GN=EXOSC1 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.9e-33
Identity = 83/186 (44.62%), Postives = 112/186 (60.22%), Query Frame = 0


Query: 10  FVTPGEVLGKFSDLKAGKGAYVANNTVYASLSGFRSIIPPPTDSSDLRPTVEVTGHKAHG 69
           +  PGE L    +   G G Y  +  +++SL+G        +  +   P V V       
Sbjct: 7   YCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLM----KSSENGALPVVSVVRETESQ 66

Query: 70  AVPAPGSIVIARVTKVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEIDKVDMHLSF 129
            +P  G+IV  +V+ + SR A   I+ VG   +K  F G IR++DVRATE DKV+++ SF
Sbjct: 67  LLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSF 126

Query: 130 RPGDIVKALVLSLGDARA-YHLSTAKNELGVVSAESTAGAVMVPISWTEMQCPLTGQIQQ 189
           RPGDIV A V+SLGDA++ Y L+TA+NELGVV A S +G  MVPISW EMQCP T   + 
Sbjct: 127 RPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTKEF 186

Query: 190 RKVAKV 195
           RKVA+V
Sbjct: 187 RKVARV 188

[Close]

BLAST of Lag0035416 vs. ExPASy Swiss-Prot
Match: Q9DAA6 (Exosome complex component CSL4 OS=Mus musculus OX=10090 GN=Exosc1 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.9e-33
Identity = 82/186 (44.09%), Postives = 112/186 (60.22%), Query Frame = 0


Query: 10  FVTPGEVLGKFSDLKAGKGAYVANNTVYASLSGFRSIIPPPTDSSDLRPTVEVTGHKAHG 69
           +  PGE L    +   G G Y  +  +++SL+G        T  +   P V V       
Sbjct: 7   YCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLM----KTSENGAVPVVSVMRETESQ 66

Query: 70  AVPAPGSIVIARVTKVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEIDKVDMHLSF 129
            +P  G++V  +V+ + SR A   I+ VG   +K  F G IR++D+RATE DKV+++ SF
Sbjct: 67  LLPDVGAVVTCKVSSINSRFAKVHILYVGSTPLKNAFRGTIRKEDIRATEKDKVEIYKSF 126

Query: 130 RPGDIVKALVLSLGDARA-YHLSTAKNELGVVSAESTAGAVMVPISWTEMQCPLTGQIQQ 189
           RPGDIV A V+SLGDA++ Y L+TA+NELGVV A S +G  MVPISW EMQCP T   + 
Sbjct: 127 RPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTKEF 186

Query: 190 RKVAKV 195
           RKVA+V
Sbjct: 187 RKVARV 188

[Close]

BLAST of Lag0035416 vs. ExPASy Swiss-Prot
Match: O59821 (Exosome complex component csl4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=csl4 PE=3 SV=2)

HSP 1 Score: 112.8 bits (281), Expect = 4.3e-24
Identity = 72/184 (39.13%), Postives = 109/184 (59.24%), Query Frame = 0


Query: 11  VTPGEVLGKFSDLKAGKGAYVANNTVYASLSGFRSIIPPPTDSSDLRPTVEVTGHKAHGA 70
           V PG+V+ +      G+G     + + ++ +G   I  P  +S      VE T       
Sbjct: 4   VLPGQVVAR--GAPNGEGTVKRGDYIISTRTG---IFDPEKNSVTYPRKVEET-----AV 63

Query: 71  VPAPGSIVIARVTKVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEIDKVDMHLSFR 130
           +P  GSIV+ARV+++ +R A+ +I  V     K++F G+I  QD+RATE +KV +  SFR
Sbjct: 64  LPNVGSIVLARVSRINARQATVNISVVDDVCTKDEFQGVIHVQDIRATEKNKVKVQNSFR 123

Query: 131 PGDIVKALVLSLGDARAYHLSTAKNELGVVSAEST-AGAVMVPISWTEMQCPLTGQIQQR 190
           PGDIV+ALV+SLGD  +Y L+TA+N+LGV+ A+S+  G  M P+ +  MQ   +G  + R
Sbjct: 124 PGDIVRALVISLGDGSSYFLTTARNDLGVIFAQSSETGEQMFPVDYQHMQTK-SGYTEMR 176

Query: 191 KVAK 194
           K AK
Sbjct: 184 KCAK 176

[Close]

BLAST of Lag0035416 vs. ExPASy Swiss-Prot
Match: P53859 (Exosome complex component CSL4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CSL4 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.5e-18
Identity = 59/159 (37.11%), Postives = 83/159 (52.20%), Query Frame = 0


Query: 71  VPAPGSIVIARVTKVMSRMASADIMCVGPK------------------------------ 130
           +P  G IV+ RVT++  + A+ +I+ V  K                              
Sbjct: 132 LPKEGDIVLTRVTRLSLQRANVEILAVEDKPSPIDSGIGSNGSGIVAAGGGSGAATFSVS 191

Query: 131 ----SVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNE 190
                + E F GIIR QDVR+T+ D+V +   F+PGDIV+A VLSLGD   Y+L+TA+N+
Sbjct: 192 QASSDLGETFRGIIRSQDVRSTDRDRVKVIECFKPGDIVRAQVLSLGDGTNYYLTTARND 251

Query: 191 LGVVSAEST--AGAVMVPISWTEMQCPLTGQIQQRKVAK 194
           LGVV A +   AG +M    W  M  P+TG  ++RK AK
Sbjct: 252 LGVVFARAANGAGGLMYATDWQMMTSPVTGATEKRKCAK 290

[Close]

BLAST of Lag0035416 vs. ExPASy TrEMBL
Match: A0A6J1F6G8 (exosome complex component CSL4 OS=Cucurbita moschata OX=3662 GN=LOC111441251 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 9.4e-99
Identity = 187/197 (94.92%), Postives = 191/197 (96.95%), Query Frame = 0


Query: 1   MKEGEEETEFVTPGEVLGKFSDLKAGKGAYVANNTVYASLSGFRSIIPPPTDSSDLRPTV 60
           MKEGEEETEFVTPGEVLGKFSD+K GKGAYVANNTVYASLSGFR II PPTDSSD RPTV
Sbjct: 1   MKEGEEETEFVTPGEVLGKFSDMKPGKGAYVANNTVYASLSGFRRIISPPTDSSDSRPTV 60

Query: 61  EVTGHKAHGAVPAPGSIVIARVTKVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEI 120
           EVTGHKAHGAVPAPGSIV ARVTKVM RMASADIMCVGPKSVKEKF+G+IRQQDVRATEI
Sbjct: 61  EVTGHKAHGAVPAPGSIVTARVTKVMPRMASADIMCVGPKSVKEKFSGVIRQQDVRATEI 120

Query: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 180
           DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVM+PISWTEMQC
Sbjct: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMIPISWTEMQC 180

Query: 181 PLTGQIQQRKVAKVGGS 198
           PLTGQIQQRKVAKVGGS
Sbjct: 181 PLTGQIQQRKVAKVGGS 197

[Close]

BLAST of Lag0035416 vs. ExPASy TrEMBL
Match: A0A6J1IH52 (exosome complex component CSL4 OS=Cucurbita maxima OX=3661 GN=LOC111472912 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.2e-98
Identity = 188/197 (95.43%), Postives = 191/197 (96.95%), Query Frame = 0


Query: 1   MKEGEEETEFVTPGEVLGKFSDLKAGKGAYVANNTVYASLSGFRSIIPPPTDSSDLRPTV 60
           MK GEEETEFVTPGEVLGKFSD+K GKGAYVANNTVYASLSGFR II PPTDSSD RPTV
Sbjct: 5   MKVGEEETEFVTPGEVLGKFSDMKPGKGAYVANNTVYASLSGFRRIISPPTDSSDSRPTV 64

Query: 61  EVTGHKAHGAVPAPGSIVIARVTKVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEI 120
           EVTGHKAHGAVPAPGSIVIARVTKVM RMASADIMCVGPKSVKEKF+G+IRQQDVRATEI
Sbjct: 65  EVTGHKAHGAVPAPGSIVIARVTKVMPRMASADIMCVGPKSVKEKFSGVIRQQDVRATEI 124

Query: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 180
           DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC
Sbjct: 125 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 184

Query: 181 PLTGQIQQRKVAKVGGS 198
           PLTGQIQQRKVAKVGGS
Sbjct: 185 PLTGQIQQRKVAKVGGS 201

[Close]

BLAST of Lag0035416 vs. ExPASy TrEMBL
Match: A0A1S3CMV8 (exosome complex component CSL4 OS=Cucumis melo OX=3656 GN=LOC103502755 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 5.7e-96
Identity = 181/196 (92.35%), Postives = 190/196 (96.94%), Query Frame = 0


Query: 1   MKEGEEETEFVTPGEVLGKFSDLKAGKGAYVANNTVYASLSGFRSIIPPPTDSSDLRPTV 60
           MKEGE+ETEFVTPGE+LG FSD K G+GAYVA+NTVYASLSGFR IIPPP+DSSDLR TV
Sbjct: 1   MKEGEKETEFVTPGEILGNFSDFKPGRGAYVADNTVYASLSGFRRIIPPPSDSSDLRSTV 60

Query: 61  EVTGHKAHGAVPAPGSIVIARVTKVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEI 120
           EVTGHKAHGAVPAPGSIVIARVTKVM++MASADIMCVGPKSVKEKFTGIIRQQDVRATEI
Sbjct: 61  EVTGHKAHGAVPAPGSIVIARVTKVMTKMASADIMCVGPKSVKEKFTGIIRQQDVRATEI 120

Query: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 180
           DKVDMHLSFRPGDIVKALVLSLGDA+AYHLSTAKNELGVVSAESTAGA MVPISWTEMQC
Sbjct: 121 DKVDMHLSFRPGDIVKALVLSLGDAKAYHLSTAKNELGVVSAESTAGAEMVPISWTEMQC 180

Query: 181 PLTGQIQQRKVAKVGG 197
           P+TGQIQQRKVAKVGG
Sbjct: 181 PVTGQIQQRKVAKVGG 196

[Close]

BLAST of Lag0035416 vs. ExPASy TrEMBL
Match: A0A6J1DE54 (exosome complex component CSL4 OS=Momordica charantia OX=3673 GN=LOC111019593 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.7e-95
Identity = 184/196 (93.88%), Postives = 189/196 (96.43%), Query Frame = 0


Query: 1   MKEGEEETEFVTPGEVLGKFSDLKAGKGAYVANNTVYASLSGFRSIIPPPTDSSDLRPTV 60
           MKE  EET+FVTPGEVLGK SDLK+GKGAYVANNTVYASLSGFR I+PPP +SSD RPTV
Sbjct: 1   MKEA-EETQFVTPGEVLGKPSDLKSGKGAYVANNTVYASLSGFRRILPPPPNSSDSRPTV 60

Query: 61  EVTGHKAHGAVPAPGSIVIARVTKVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEI 120
           EVTGHKAHGAVPAPGS+VIARVT VMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEI
Sbjct: 61  EVTGHKAHGAVPAPGSVVIARVTNVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEI 120

Query: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 180
           DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC
Sbjct: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 180

Query: 181 PLTGQIQQRKVAKVGG 197
           PLTGQIQQRKVAKVGG
Sbjct: 181 PLTGQIQQRKVAKVGG 195

[Close]

BLAST of Lag0035416 vs. ExPASy TrEMBL
Match: A0A0A0L935 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G627150 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.1e-94
Identity = 179/196 (91.33%), Postives = 187/196 (95.41%), Query Frame = 0


Query: 1   MKEGEEETEFVTPGEVLGKFSDLKAGKGAYVANNTVYASLSGFRSIIPPPTDSSDLRPTV 60
           MKEGE++TEFVTPGEVLG FSD K G+GAYV +NTVYASLSGFR II PP+DSSDLR TV
Sbjct: 1   MKEGEKDTEFVTPGEVLGNFSDFKPGRGAYVTDNTVYASLSGFRRIIHPPSDSSDLRSTV 60

Query: 61  EVTGHKAHGAVPAPGSIVIARVTKVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEI 120
           EVTGHKAHGAVPAPGSIVI RVTKVM++MASADIMCVGPKSVKEKFTGIIRQQDVRATEI
Sbjct: 61  EVTGHKAHGAVPAPGSIVIVRVTKVMTKMASADIMCVGPKSVKEKFTGIIRQQDVRATEI 120

Query: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 180
           DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGA MVPISWTEMQC
Sbjct: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAEMVPISWTEMQC 180

Query: 181 PLTGQIQQRKVAKVGG 197
           P+TGQIQQRKVAKVGG
Sbjct: 181 PVTGQIQQRKVAKVGG 196

[Close]

BLAST of Lag0035416 vs. TAIR 10
Match: AT5G38890.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 271.2 bits (692), Expect = 6.7e-73
Identity = 135/188 (71.81%), Postives = 158/188 (84.04%), Query Frame = 0


Query: 8   TEFVTPGEVLGKFSDLKAGKGAYVANNTVYASLSGFRSIIPPPTDSSDLRPTVEVTGHKA 67
           T  VTPG+V+GK ++ KAGKGAYV + T+YASL+G   I+ P  +S D R  VEVTGHKA
Sbjct: 3   TGLVTPGDVIGKATEFKAGKGAYVNDATIYASLTGTCRIVSPLPESIDQRAIVEVTGHKA 62

Query: 68  HGAVPAPGSIVIARVTKVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEIDKVDMHL 127
           HG +P  GS+VIARVTKVM++MA+ DI+CVG K+V+E F G+IRQQDVRATEIDKVDMH 
Sbjct: 63  HGPIPETGSVVIARVTKVMTKMAAVDILCVGSKAVRENFAGVIRQQDVRATEIDKVDMHQ 122

Query: 128 SFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQCPLTGQIQ 187
           SF  GDIV+A+VLSLGDARAY+LSTAKNELGVVSAES AG  MVPISWTEMQCPL+GQ +
Sbjct: 123 SFHAGDIVRAMVLSLGDARAYYLSTAKNELGVVSAESAAGETMVPISWTEMQCPLSGQTE 182

Query: 188 QRKVAKVG 196
           QRKVAKVG
Sbjct: 183 QRKVAKVG 190

The following BLAST results are available for this feature:

BLAST of Lag0035416 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020862.1	3.9e-99	95.94	Exosome complex component CSL4 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023530831.1	3.9e-99	95.94	exosome complex component CSL4 [Cucurbita pepo subsp. pepo]	[more]
XP_022934020.1	1.9e-98	94.92	exosome complex component CSL4 [Cucurbita moschata]	[more]
XP_022974279.1	2.5e-98	95.43	exosome complex component CSL4 [Cucurbita maxima]	[more]
KAG6588300.1	1.1e-96	95.85	Bifunctional TH2 protein, mitochondrial, partial [Cucurbita argyrosperma subsp. ...	[more]

BLAST of Lag0035416 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9Y3B2	3.9e-33	44.62	Exosome complex component CSL4 OS=Homo sapiens OX=9606 GN=EXOSC1 PE=1 SV=1	[more]
Q9DAA6	3.9e-33	44.09	Exosome complex component CSL4 OS=Mus musculus OX=10090 GN=Exosc1 PE=1 SV=1	[more]
O59821	4.3e-24	39.13	Exosome complex component csl4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]
P53859	3.5e-18	37.11	Exosome complex component CSL4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /...	[more]

BLAST of Lag0035416 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F6G8	9.4e-99	94.92	exosome complex component CSL4 OS=Cucurbita moschata OX=3662 GN=LOC111441251 PE=...	[more]
A0A6J1IH52	1.2e-98	95.43	exosome complex component CSL4 OS=Cucurbita maxima OX=3661 GN=LOC111472912 PE=4 ...	[more]
A0A1S3CMV8	5.7e-96	92.35	exosome complex component CSL4 OS=Cucumis melo OX=3656 GN=LOC103502755 PE=4 SV=1	[more]
A0A6J1DE54	3.7e-95	93.88	exosome complex component CSL4 OS=Momordica charantia OX=3673 GN=LOC111019593 PE...	[more]
A0A0A0L935	4.1e-94	91.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G627150 PE=4 SV=1	[more]

BLAST of Lag0035416 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G38890.1	6.7e-73	71.81	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019495	Exosome complex component CSL4, C-terminal	PFAM	PF10447	EXOSC1	coord: 101..142 e-value: 2.2E-11 score: 44.3
None	No IPR available	GENE3D	2.40.50.100		coord: 10..60 e-value: 2.5E-8 score: 35.2
None	No IPR available	GENE3D	2.40.50.140		coord: 65..195 e-value: 1.2E-53 score: 182.4
None	No IPR available	CDD	cd05791	S1_CSL4	coord: 71..160 e-value: 5.97271E-46 score: 144.696
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 10..46
IPR025721	Exosome complex component, N-terminal domain	PFAM	PF14382	ECR1_N	coord: 10..46 e-value: 6.1E-12 score: 45.2
IPR039771	Exosome complex component Csl4	PANTHER	PTHR12686	3'-5' EXORIBONUCLEASE CSL4-RELATED	coord: 1..195
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 71..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0035416.1	Lag0035416.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0000178	exosome (RNase complex)
molecular_function	GO:0003723	RNA binding