Lag0035325 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0035325
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Eukaryotic translation initiation factor 3 subunit I
Location	chr3: 18927968 .. 18928843 (-)
RNA-Seq Expression	Lag0035325
Synteny	Lag0035325

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAGCTTCTCTTCAGTGGACATCAACAGGGTGTACAGGACTAAAGCACCCTTACATCCAAGAGGGAATGATGCCATCAGGAACCCCTCGGCCAATCATATGAAAAATGCACTGAAATTAGTGGCCAACAAAGGAGTTCAATGGAAAGAATCCCAGACAAAGGTGAAGACACTAGTGCCAAGCGACCAAAAGCCTGAATCTGCAGCATGGCTTCACTTTATCAAGAACCGATTGATGCCAACCACCCATGATAGCACCATCTCAGTGGAGAGAATTATGCTCCTCTACTGTATTATGAAGGGGTTCGAGATTAACATTGGGAGCATTATCAAGGAAGAGATTCTTGCCTGTGGAAGGAAAAGAATAGGAAATATTTTCTTTGGATCATTGATCATCTAGCCTTTTCAGAGGGTAAAGATAGTTCCTGGCAAGGATGAGAAGCGTCACTTCTTCAAGCCTACCATTGACCTGTCCTTGATCGGGAAGCTTCAAAAGAACAACATCCAAAGGAAAGACAAAGCCTCCACATCTCAAGCCACTCCACCGTCAGGGCTAAACACGGCTTCTCCATCTCAGCACACTTCTTTTTCAGGGCCCTCACCATCGTCTGAAGCCCTAGCAATTGCCTATCAACAGCTAGATCAACTCAGGGATAACCTGAGGACTTATTGGGCATATGCCAAGGAGAGAGATGAAGTCATTAGAGAGTTCTACCTCTCTATCGCCCGAGTATTGCTCCTATCTTTCTTGATTTCCCTAAATCGCCGCTGCCTCAAGGAGACAAGGATTCTGATGAAGAAGATTATGAAAATGATGAAGATGAAGATGAAGAAAGAGAGAGTTCCTCATACGAGGACTAAGGGAGTTTTATGA

mRNA sequence

ATGGTCAGCTTCTCTTCAGTGGACATCAACAGGGTGTACAGGACTAAAGCACCCTTACATCCAAGAGGGAATGATGCCATCAGGAACCCCTCGGCCAATCATATGAAAAATGCACTGAAATTAGTGGCCAACAAAGGAGTTCAATGGAAAGAATCCCAGACAAAGGTGAAGACACTAGTGCCAAGCGACCAAAAGCCTGAATCTGCAGCATGGCTTCACTTTATCAAGAACCGATTGATGCCAACCACCCATGATAGCACCATCTCAGTGGAGAGAATTATGCTCCTCTACTGTATTATGAAGGGGTTCGAGATTAACATTGGGAGCATTATCAAGGAAGAGATTCTTGCCTTTCCTGGCAAGGATGAGAAGCGTCACTTCTTCAAGCCTACCATTGACCTGTCCTTGATCGGGAAGCTTCAAAAGAACAACATCCAAAGGAAAGACAAAGCCTCCACATCTCAAGCCACTCCACCGTCAGGGCTAAACACGGCTTCTCCATCTCAGCACACTTCTTTTTCAGGGCCCTCACCATCGTCTGAAGCCCTAGCAATTGCCTATCAACAGCTAGATCAACTCAGGGATAACCTGAGGACTTATTGGGCATATGCCAAGGAGAGAGATGAAGTCATTAGAGAGTTCTACCTCTCTATCGCCCGAGTATTGCTCCTATCTTTCTTGATTTCCCTAAATCGCCGCTGCCTCAAGGAGACAAGGATTCTGATGAAGAAGATTATGAAAATGATGAAGATGAAGATGAAGAAAGAGAGAGTTCCTCATACGAGGACTAAGGGAGTTTTATGA

Coding sequence (CDS)

ATGGTCAGCTTCTCTTCAGTGGACATCAACAGGGTGTACAGGACTAAAGCACCCTTACATCCAAGAGGGAATGATGCCATCAGGAACCCCTCGGCCAATCATATGAAAAATGCACTGAAATTAGTGGCCAACAAAGGAGTTCAATGGAAAGAATCCCAGACAAAGGTGAAGACACTAGTGCCAAGCGACCAAAAGCCTGAATCTGCAGCATGGCTTCACTTTATCAAGAACCGATTGATGCCAACCACCCATGATAGCACCATCTCAGTGGAGAGAATTATGCTCCTCTACTGTATTATGAAGGGGTTCGAGATTAACATTGGGAGCATTATCAAGGAAGAGATTCTTGCCTTTCCTGGCAAGGATGAGAAGCGTCACTTCTTCAAGCCTACCATTGACCTGTCCTTGATCGGGAAGCTTCAAAAGAACAACATCCAAAGGAAAGACAAAGCCTCCACATCTCAAGCCACTCCACCGTCAGGGCTAAACACGGCTTCTCCATCTCAGCACACTTCTTTTTCAGGGCCCTCACCATCGTCTGAAGCCCTAGCAATTGCCTATCAACAGCTAGATCAACTCAGGGATAACCTGAGGACTTATTGGGCATATGCCAAGGAGAGAGATGAAGTCATTAGAGAGTTCTACCTCTCTATCGCCCGAGTATTGCTCCTATCTTTCTTGATTTCCCTAAATCGCCGCTGCCTCAAGGAGACAAGGATTCTGATGAAGAAGATTATGAAAATGATGAAGATGAAGATGAAGAAAGAGAGAGTTCCTCATACGAGGACTAAGGGAGTTTTATGA

Protein sequence

MVSFSSVDINRVYRTKAPLHPRGNDAIRNPSANHMKNALKLVANKGVQWKESQTKVKTLVPSDQKPESAAWLHFIKNRLMPTTHDSTISVERIMLLYCIMKGFEINIGSIIKEEILAFPGKDEKRHFFKPTIDLSLIGKLQKNNIQRKDKASTSQATPPSGLNTASPSQHTSFSGPSPSSEALAIAYQQLDQLRDNLRTYWAYAKERDEVIREFYLSIARVLLLSFLISLNRRCLKETRILMKKIMKMMKMKMKKERVPHTRTKGVL

Homology

[Close]

BLAST of Lag0035325 vs. NCBI nr
Match: XP_038876674.1 (chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida])

HSP 1 Score: 90.1 bits (222), Expect = 3.1e-14
Identity = 42/116 (36.21%), Postives = 69/116 (59.48%), Query Frame = 0


Query: 2   VSFSSVDINRVYRTKAPLHPRGNDAIRNPSANHMKNALKLVANKGVQWKESQTKVKTLVP 61
           VSFS+ DIN +Y+ K   +  GN  I +P+   M++AL+++   G++W  S   V TL  
Sbjct: 299 VSFSARDINEIYQMKDNPYASGNKIIDDPTEQQMEDALQVLMQLGMKWSVSLKGVSTLAS 358

Query: 62  SDQKPESAAWLHFIKNRLMPTTHDSTISVERIMLLYCIMKGFEINIGSIIKEEILA 118
                E   W++ +K RL+ TTHD T+S +R+M  YCI++   I++G +I  ++ A
Sbjct: 359 KSLLLEGRLWVYLVKKRLISTTHDKTVSRDRVMATYCIVRSIPIDVGQLIARQLRA 414

[Close]

BLAST of Lag0035325 vs. NCBI nr
Match: XP_038904385.1 (uncharacterized protein LOC120090747 [Benincasa hispida])

HSP 1 Score: 89.4 bits (220), Expect = 5.3e-14
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 1   MVSFSSVDINRVYRTKAPLHPRGNDAIRNPSANHMKNALKLVANKGVQWKESQTKVKTLV 60
           +V FS+ DIN +Y+ K      GN  I +P    M++AL+ +   G QW  S   +KTL 
Sbjct: 237 IVPFSARDINELYKMKDIPDASGNKIIDDPQEEKMEDALRTLTQSGTQWSVSLKGIKTLA 296

Query: 61  PSDQKPESAAWLHFIKNRLMPTTHDSTISVERIMLLYCIMKGFEINIGSII 112
            S   PE+  W++ +K R++PT+HD T+S +R+M  YCI  G  I++  +I
Sbjct: 297 SSKLLPEARLWVYLVKRRIIPTSHDKTVSRDRVMAAYCIACGILIDVSHLI 347

[Close]

BLAST of Lag0035325 vs. NCBI nr
Match: KAA0048500.1 (protein MNN4-like [Cucumis melo var. makuwa] >TYK28291.1 protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 9.9e-13
Identity = 51/120 (42.50%), Postives = 70/120 (58.33%), Query Frame = 0


Query: 1   MVSFSSVDINRVY--RTKAPLHPRGNDAIRNPSANHMKNALKLVANKGVQWKESQTKVKT 60
           MV+F    +N +Y  R     +P      + PS   M+NAL+ VA  G++W  +  K   
Sbjct: 190 MVNFGPKVVNVLYGLRQTTVEYP----IFKEPSDIDMQNALERVAWPGMKWDITPIKKYQ 249

Query: 61  LVPSDQKPESAAWLHFIKNRLMPTTHDSTISVERIMLLYCIMKGFEINIGSIIKEEILAF 119
           L P + K  ++ WL FIK  LMPT HD+TIS+ERIMLLYCIM+   +N+  II E I A+
Sbjct: 250 LFPHNLKTTASVWLVFIKKNLMPTRHDNTISLERIMLLYCIMEEIPLNVDEIIYEPIEAW 305

[Close]

BLAST of Lag0035325 vs. NCBI nr
Match: PON78020.1 (hypothetical protein PanWU01x14_023740 [Parasponia andersonii])

HSP 1 Score: 82.4 bits (202), Expect = 6.4e-12
Identity = 68/232 (29.31%), Postives = 107/232 (46.12%), Query Frame = 0


Query: 2   VSFSSVDINRVYRTKAPLHPRGNDAIRNPSANHMKNALKLVANKGVQWKESQTKVKTLVP 61
           VS+S   IN V+    P+    ++ I N +   +   L+ VA  G +W  S     T + 
Sbjct: 39  VSWSEEAINAVFGLGDPVDEH-SEFIENITEPELITVLETVAAAGAEWNVSAQGAYTCIR 98

Query: 62  SDQKPESAAWLHFIKNRLMPTTHDSTISVERIMLLYCIMKGFEINIGSIIKEEILAFPGK 121
           S   P +  W HF+K+RL+PTTH   +S +R++LL+ ++ G  IN+G +I  EI A   +
Sbjct: 99  SALTPAAKVWYHFLKSRLLPTTHGKIVSKDRMLLLHSMLNGKSINVGRMIHSEIRACAAQ 158

Query: 122 DEKRHFFKPTIDLSLIGKLQKN-----NIQRKDKASTSQATPPSGLNTASPSQHT---SF 181
                FF      SLI +L +N     N ++        A   + +    P++ T   S 
Sbjct: 159 KTGALFFP-----SLITRLCRNAPFLVNEEKLHNTGEIDAIAVARITQEGPTESTQQPSS 218

Query: 182 SGP--SPSSEALAIAYQQLDQLRDNL----------RTYWAYAKERDEVIRE 214
           S P  + SS       QQL  L   L          + +WAY+KERD  +++
Sbjct: 219 SRPAAASSSRTNGDVLQQLKALEQRLSQQEHTHKQQQQFWAYSKERDTALKK 264

[Close]

BLAST of Lag0035325 vs. NCBI nr
Match: PON62892.1 (hypothetical protein PanWU01x14_135680 [Parasponia andersonii])

HSP 1 Score: 80.5 bits (197), Expect = 2.4e-11
Identity = 64/209 (30.62%), Postives = 97/209 (46.41%), Query Frame = 0


Query: 2   VSFSSVDINRVYRTKAPL--HPRGNDAIRNPSANHMKNALKLVANKGVQWKESQTKVKTL 61
           V  S+  IN +Y    P+  H    +AI  P    +   L+ VA  G +W  S     T 
Sbjct: 16  VPLSTEAINTIYGLGDPVDEHSEFVEAITEP---ELATVLETVAIAGAEWNVSSQGAYTC 75

Query: 62  VPSDQKPESAAWLHFIKNRLMPTTHDSTISVERIMLLYCIMKGFEINIGSIIKEEILAFP 121
           + S   P +  W HF+K+RL+PTTH  T+S ER++LLY ++ G  IN+G II  EI A+ 
Sbjct: 76  LRSSLNPPAKVWYHFLKSRLLPTTHGKTVSKERVLLLYSMLTGKSINVGQIIHREICAYA 135

Query: 122 GKDEKRHFFKPTIDLSLIGKLQKN-------NIQRKDKASTSQATPPSGLNTASPSQHT- 181
            +     FF      SLI ++  N       N ++        A   + +    P++H+ 
Sbjct: 136 ARKSGALFFP-----SLITRMCCNARAPYLVNEEKLHNTGEIDAIAVARIAQEGPAEHSH 195

Query: 182 --SFSGP-SPSSEALAIAYQQLDQLRDNL 198
             S S P + SS + +   QQL  L   +
Sbjct: 196 RPSSSRPAAASSSSTSETLQQLKSLEQRI 216

[Close]

BLAST of Lag0035325 vs. ExPASy TrEMBL
Match: A0A5A7TZE0 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001090 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.8e-13
Identity = 51/120 (42.50%), Postives = 70/120 (58.33%), Query Frame = 0


Query: 1   MVSFSSVDINRVY--RTKAPLHPRGNDAIRNPSANHMKNALKLVANKGVQWKESQTKVKT 60
           MV+F    +N +Y  R     +P      + PS   M+NAL+ VA  G++W  +  K   
Sbjct: 190 MVNFGPKVVNVLYGLRQTTVEYP----IFKEPSDIDMQNALERVAWPGMKWDITPIKKYQ 249

Query: 61  LVPSDQKPESAAWLHFIKNRLMPTTHDSTISVERIMLLYCIMKGFEINIGSIIKEEILAF 119
           L P + K  ++ WL FIK  LMPT HD+TIS+ERIMLLYCIM+   +N+  II E I A+
Sbjct: 250 LFPHNLKTTASVWLVFIKKNLMPTRHDNTISLERIMLLYCIMEEIPLNVDEIIYEPIEAW 305

[Close]

BLAST of Lag0035325 vs. ExPASy TrEMBL
Match: A0A2P5DXM3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.1e-12
Identity = 68/232 (29.31%), Postives = 107/232 (46.12%), Query Frame = 0


Query: 2   VSFSSVDINRVYRTKAPLHPRGNDAIRNPSANHMKNALKLVANKGVQWKESQTKVKTLVP 61
           VS+S   IN V+    P+    ++ I N +   +   L+ VA  G +W  S     T + 
Sbjct: 39  VSWSEEAINAVFGLGDPVDEH-SEFIENITEPELITVLETVAAAGAEWNVSAQGAYTCIR 98

Query: 62  SDQKPESAAWLHFIKNRLMPTTHDSTISVERIMLLYCIMKGFEINIGSIIKEEILAFPGK 121
           S   P +  W HF+K+RL+PTTH   +S +R++LL+ ++ G  IN+G +I  EI A   +
Sbjct: 99  SALTPAAKVWYHFLKSRLLPTTHGKIVSKDRMLLLHSMLNGKSINVGRMIHSEIRACAAQ 158

Query: 122 DEKRHFFKPTIDLSLIGKLQKN-----NIQRKDKASTSQATPPSGLNTASPSQHT---SF 181
                FF      SLI +L +N     N ++        A   + +    P++ T   S 
Sbjct: 159 KTGALFFP-----SLITRLCRNAPFLVNEEKLHNTGEIDAIAVARITQEGPTESTQQPSS 218

Query: 182 SGP--SPSSEALAIAYQQLDQLRDNL----------RTYWAYAKERDEVIRE 214
           S P  + SS       QQL  L   L          + +WAY+KERD  +++
Sbjct: 219 SRPAAASSSRTNGDVLQQLKALEQRLSQQEHTHKQQQQFWAYSKERDTALKK 264

[Close]

BLAST of Lag0035325 vs. ExPASy TrEMBL
Match: A0A2P5CPE8 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_135680 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-11
Identity = 64/209 (30.62%), Postives = 97/209 (46.41%), Query Frame = 0


Query: 2   VSFSSVDINRVYRTKAPL--HPRGNDAIRNPSANHMKNALKLVANKGVQWKESQTKVKTL 61
           V  S+  IN +Y    P+  H    +AI  P    +   L+ VA  G +W  S     T 
Sbjct: 16  VPLSTEAINTIYGLGDPVDEHSEFVEAITEP---ELATVLETVAIAGAEWNVSSQGAYTC 75

Query: 62  VPSDQKPESAAWLHFIKNRLMPTTHDSTISVERIMLLYCIMKGFEINIGSIIKEEILAFP 121
           + S   P +  W HF+K+RL+PTTH  T+S ER++LLY ++ G  IN+G II  EI A+ 
Sbjct: 76  LRSSLNPPAKVWYHFLKSRLLPTTHGKTVSKERVLLLYSMLTGKSINVGQIIHREICAYA 135

Query: 122 GKDEKRHFFKPTIDLSLIGKLQKN-------NIQRKDKASTSQATPPSGLNTASPSQHT- 181
            +     FF      SLI ++  N       N ++        A   + +    P++H+ 
Sbjct: 136 ARKSGALFFP-----SLITRMCCNARAPYLVNEEKLHNTGEIDAIAVARIAQEGPAEHSH 195

Query: 182 --SFSGP-SPSSEALAIAYQQLDQLRDNL 198
             S S P + SS + +   QQL  L   +
Sbjct: 196 RPSSSRPAAASSSSTSETLQQLKSLEQRI 216

[Close]

BLAST of Lag0035325 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.4e-11
Identity = 69/247 (27.94%), Postives = 109/247 (44.13%), Query Frame = 0


Query: 2   VSFSSVDINRVYRTKAPLHPRGNDAIRNPSANHMKNALKLVANKGVQWKESQTKVKTLVP 61
           VS+S   IN V+    P+    ++ I+N +   +   L+ VA  G +W  S     T + 
Sbjct: 109 VSWSEEAINAVFGLGDPVDEH-SEFIQNITQQDLITVLETVAAAGAEWNVSAQGAYTCIR 168

Query: 62  SDQKPESAAWLHFIKNRLMPTTHDSTISVERIMLLYCIMKGFEINIGSIIKEEILAFPGK 121
           S   P +  W HF+K+RL+PTTH  T+S +R++LL+ ++ G  IN+G +I  EI A   +
Sbjct: 169 SALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAAR 228

Query: 122 DEKRHFFKPTIDLSLIGKLQKN-------NIQRKDKASTSQATPPSGLNTASPSQHTSFS 181
                FF      SLI +L +N       N ++        A   + +    P++ T   
Sbjct: 229 KTGALFFP-----SLITRLCRNARAPFLVNEEKLHNTGEIDAIAVARIAQEGPTEST--Q 288

Query: 182 GPSPSSEALAIA-------YQQLDQLRDNL---------------------RTYWAYAKE 214
            PS S  A A +        QQL  L   L                     + +WAY+KE
Sbjct: 289 QPSSSRPATASSNRTNGDILQQLKALEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKE 347

[Close]

BLAST of Lag0035325 vs. ExPASy TrEMBL
Match: A0A5A7U0U4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001210 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.7e-11
Identity = 42/116 (36.21%), Postives = 65/116 (56.03%), Query Frame = 0


Query: 2   VSFSSVDINRVYRTKAPLHPRGNDAIRNPSANHMKNALKLVANKGVQWKESQTKVKTLVP 61
           ++F    IN +Y  K   +  G+   +NP   +++ AL+     G +W +  T +  L P
Sbjct: 127 INFGPSTINVIYGLKN--NGLGHGIFKNPKDRNLQEALEKAKWSGTKWDQIPTYMYQLFP 186

Query: 62  SDQKPESAAWLHFIKNRLMPTTHDSTISVERIMLLYCIMKGFEINIGSIIKEEILA 118
            +   E++ WL FIK  +MPT HD+ IS+ERIMLLY I+    +N+G II E + A
Sbjct: 187 HNLTTEASVWLVFIKKNIMPTHHDNIISMERIMLLYYIIMEILVNVGEIICEHLTA 240

The following BLAST results are available for this feature:

BLAST of Lag0035325 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876674.1	3.1e-14	36.21	chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida]	[more]
XP_038904385.1	5.3e-14	37.84	uncharacterized protein LOC120090747 [Benincasa hispida]	[more]
KAA0048500.1	9.9e-13	42.50	protein MNN4-like [Cucumis melo var. makuwa] >TYK28291.1 protein MNN4-like [Cucu...	[more]
PON78020.1	6.4e-12	29.31	hypothetical protein PanWU01x14_023740 [Parasponia andersonii]	[more]
PON62892.1	2.4e-11	30.62	hypothetical protein PanWU01x14_135680 [Parasponia andersonii]	[more]

BLAST of Lag0035325 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0035325 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZE0	4.8e-13	42.50	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00...	[more]
A0A2P5DXM3	3.1e-12	29.31	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE...	[more]
A0A2P5CPE8	1.2e-11	30.62	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_135680 PE...	[more]
A0A2P5BCG4	3.4e-11	27.94	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A5A7U0U4	7.7e-11	36.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Lag0035325 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0035325.1	Lag0035325.1	mRNA