Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGAAAGTGCCAAAGCGTCGTCGCATTAAGCGAAAGGCGGGCCGCGTCAGAGTGATTCGAACTACCCCATCACCTCCGTCGTCGGATTCTGAGGAGGAGAGAAGAGAACAAGAAAAGAAGGTGGTTAAAGACAAAGCAAGAGAGGAAGAAGCAAAGAAGGCTGAGGAAGAAATTTTGCCCAAGCGGAGGGAAGACAAGAGCAAAGGTATTGTTGAAGCATCGGGTGCAGCTGACGAGATTGAGGAACCAAGATTACCGTACCATCGCTTCATCAATAACCTTGCTCGGGCAAAGTATGTTGAGATGCTGAGACAGGACTTCCTGTTTGAATGAGGATTTGGCGATGATCTGCCATGGTTCTTGAGGACTGGAATAACGAACCTCGGCTGGAGTCGATTTTGTGCAAAGTCGGAACCTGTTAATTCCAACATTGTTCAGGAATTTTACGCAAATATTGACGATGAGGAATAATTTCAGGTTGTAGTTCGAGGAGTGCCCGTTGACTGGAGCCCGAGAGCCATTAATGCTTTGTTCAACGTCCAGGACTTTCCGCACACAGCCTTTAATGAGATGATGGTCGCACCATCTAACGACCAACTAAATGCGGCTGTCCGAGAGGTTGGCATTGAGGGGGCCCAGTGGAGACTGTCGAAGATGGAAAAGCGCACATTGCAGGCTACTTACTTGAGGAGCGAGGCCAATACATGGATTGGTTTCATTAAGCTGCGCTTACTGCCGACGACTCACGACTCAACGGTGTCTCGAGACCGGGTTTTGCTTGCCTTTTCCATTCTTCGTTCGATGAGTATCGATGTGGGTAAAATAATTTCTTCTGAGATTCTTGATGACTGGCGGAAAAATGTGGGGAAGTTGTTTTTCCCCAACACTATCACGATGTTATGCCAAAGGGCAGGGGTGCCAGAGGATGAGGATGATGTGCCTCTCATAGACAAGAGGATAATTGACACACCAAATTTGGCCAGGCTTCAGAGGACTCAAGAAGCACGTTAA
mRNA sequence
ATGCCGAAAGTGCCAAAGCGTCGTCGCATTAAGCGAAAGGCGGGCCGCGTCAGAGTGATTCGAACTACCCCATCACCTCCGTCGTCGGATTCTGAGGAGGAGAGAAGAGAACAAGAAAAGAAGGTGGTTAAAGACAAAGCAAGAGAGGAAGAAGCAAAGAAGGCTGAGGAAGAAATTTTGCCCAAGCGGAGGGAAGACAAGAGCAAAGGTATTGTTGAAGCATCGGGTGCAGCTGACGAGATTGAGGAACCAAGATTACCGTACCATCGCTTCATCAATAACCTTGCTCGGGCAAAGTATGTTGTAGTTCGAGGAGTGCCCGTTGACTGGAGCCCGAGAGCCATTAATGCTTTGTTCAACGTCCAGGACTTTCCGCACACAGCCTTTAATGAGATGATGGTCGCACCATCTAACGACCAACTAAATGCGGCTGTCCGAGAGGTTGGCATTGAGGGGGCCCAGTGGAGACTGTCGAAGATGGAAAAGCGCACATTGCAGGCTACTTACTTGAGGAGCGAGGCCAATACATGGATTGGTTTCATTAAGCTGCGCTTACTGCCGACGACTCACGACTCAACGGTGTCTCGAGACCGGGTTTTGCTTGCCTTTTCCATTCTTCGTTCGATGAGTATCGATGTGGGTAAAATAATTTCTTCTGAGATTCTTGATGACTGGCGGAAAAATGTGGGGAAGTTGTTTTTCCCCAACACTATCACGATGTTATGCCAAAGGGCAGGGGTGCCAGAGGATGAGGATGATGTGCCTCTCATAGACAAGAGGATAATTGACACACCAAATTTGGCCAGGCTTCAGAGGACTCAAGAAGCACGTTAA
Coding sequence (CDS)
ATGCCGAAAGTGCCAAAGCGTCGTCGCATTAAGCGAAAGGCGGGCCGCGTCAGAGTGATTCGAACTACCCCATCACCTCCGTCGTCGGATTCTGAGGAGGAGAGAAGAGAACAAGAAAAGAAGGTGGTTAAAGACAAAGCAAGAGAGGAAGAAGCAAAGAAGGCTGAGGAAGAAATTTTGCCCAAGCGGAGGGAAGACAAGAGCAAAGGTATTGTTGAAGCATCGGGTGCAGCTGACGAGATTGAGGAACCAAGATTACCGTACCATCGCTTCATCAATAACCTTGCTCGGGCAAAGTATGTTGTAGTTCGAGGAGTGCCCGTTGACTGGAGCCCGAGAGCCATTAATGCTTTGTTCAACGTCCAGGACTTTCCGCACACAGCCTTTAATGAGATGATGGTCGCACCATCTAACGACCAACTAAATGCGGCTGTCCGAGAGGTTGGCATTGAGGGGGCCCAGTGGAGACTGTCGAAGATGGAAAAGCGCACATTGCAGGCTACTTACTTGAGGAGCGAGGCCAATACATGGATTGGTTTCATTAAGCTGCGCTTACTGCCGACGACTCACGACTCAACGGTGTCTCGAGACCGGGTTTTGCTTGCCTTTTCCATTCTTCGTTCGATGAGTATCGATGTGGGTAAAATAATTTCTTCTGAGATTCTTGATGACTGGCGGAAAAATGTGGGGAAGTTGTTTTTCCCCAACACTATCACGATGTTATGCCAAAGGGCAGGGGTGCCAGAGGATGAGGATGATGTGCCTCTCATAGACAAGAGGATAATTGACACACCAAATTTGGCCAGGCTTCAGAGGACTCAAGAAGCACGTTAA
Protein sequence
MPKVPKRRRIKRKAGRVRVIRTTPSPPSSDSEEERREQEKKVVKDKAREEEAKKAEEEILPKRREDKSKGIVEASGAADEIEEPRLPYHRFINNLARAKYVVVRGVPVDWSPRAINALFNVQDFPHTAFNEMMVAPSNDQLNAAVREVGIEGAQWRLSKMEKRTLQATYLRSEANTWIGFIKLRLLPTTHDSTVSRDRVLLAFSILRSMSIDVGKIISSEILDDWRKNVGKLFFPNTITMLCQRAGVPEDEDDVPLIDKRIIDTPNLARLQRTQEAR
Homology
BLAST of Lag0035322 vs. NCBI nr
Match:
PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])
HSP 1 Score: 115.5 bits (288), Expect = 7.1e-22
Identity = 75/192 (39.06%), Postives = 101/192 (52.60%), Query Frame = 0
Query: 82 EEPRLPYHR-FINNLA--RAKYVVVRGVPVDWSPRAINALFNVQDFPHTAFNEMMVAPSN 141
E+P +P R F NL V VRGV V WS AINA+F + D P +E + +
Sbjct: 80 EDPIVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGD-PVDEHSEFIQNITQ 139
Query: 142 DQLNAAVREVGIEGAQWRLSKMEKRTLQATYLRSEANTWIGFIKLRLLPTTHDSTVSRDR 201
L + V GA+W +S T + L A W F+K RLLPTTH TVS+DR
Sbjct: 140 QDLITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKTVSKDR 199
Query: 202 VLLAFSILRSMSIDVGKIISSEILDDWRKNVGKLFFPNTITMLCQRAGVPEDEDDVPLID 261
+LL S+L SI+VG++I SEI + G LFFP+ IT LC+ A P ++ L +
Sbjct: 200 MLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNARAPFLVNEEKLHN 259
Query: 262 KRIIDTPNLARL 271
ID +AR+
Sbjct: 260 TGEIDAIAVARI 270
BLAST of Lag0035322 vs. NCBI nr
Match:
PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])
HSP 1 Score: 115.2 bits (287), Expect = 9.3e-22
Identity = 77/197 (39.09%), Postives = 104/197 (52.79%), Query Frame = 0
Query: 82 EEPRLPYHR-FINNLAR--AKYVVVRGVPVDWSPRAINALFNVQDFPHTAFNEMMVAPSN 141
E+P +P R F NL V VRGV V WS AINA+F + D P +E + +
Sbjct: 71 EDPIVPLVREFYANLTDPVENTVYVRGVQVSWSEEAINAVFGLGD-PVDEHSEFIENITE 130
Query: 142 DQLNAAVREVGIEGAQWRLSKMEKRTLQATYLRSEANTWIGFIKLRLLPTTHDSTVSRDR 201
L + V + GA+W +S T + L A W F+K LLPTTH TVS+DR
Sbjct: 131 HDLITVLETVAVAGAEWNVSAQGAYTCIRSALTPAAKVWFHFLKSHLLPTTHGKTVSKDR 190
Query: 202 VLLAFSILRSMSIDVGKIISSEILDDWRKNVGKLFFPNTITMLCQRAGVPEDEDDVPLID 261
+LL S+L SI+VG++I SEI + G LFFP+ IT LC+ A P ++ L +
Sbjct: 191 MLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNARAPFLVNEEKLHN 250
Query: 262 KRIIDTPNLARLQRTQE 276
ID +AR+ TQE
Sbjct: 251 TGEIDAIAVARI--TQE 264
BLAST of Lag0035322 vs. NCBI nr
Match:
XP_024971944.1 (uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus])
HSP 1 Score: 110.2 bits (274), Expect = 3.0e-20
Identity = 64/179 (35.75%), Postives = 100/179 (55.87%), Query Frame = 0
Query: 101 VVVRGVPVDWSPRAINALFNVQDFPHTAFNEMMVAPSNDQLNAAVREVGIEGAQWRL-SK 160
+ VRGV V +AIN L + T F + + S +L RE+G G +W S
Sbjct: 263 IKVRGVRVSIPAKAINKLLGLSPPAETDFETLSQSSSFAKLEEIGRELGKAGIRWDAHSN 322
Query: 161 MEKRTLQATYLRSEANTWIGFIKLRLLPTTHDSTVSRDRVLLAFSILRSMSIDVGKIISS 220
RT +A+ L+ AN WI FI+ L PTTHDS++S ++++L + ++ +I+VGK++
Sbjct: 323 YMLRTYRASNLKPNANVWINFIRYSLNPTTHDSSISVEKIILLYCVVTGRTINVGKVVEK 382
Query: 221 EILDDWRKNVGKLFFPNTITMLCQRAGVPEDEDDVPL---IDKRIIDTPNLARLQRTQE 276
IL ++ GKLFFP+ I L +AGVPE DD+ + +K ID +++L+ E
Sbjct: 383 AILYCSKRRQGKLFFPSLIHKLLMQAGVPEYTDDLVIKECEEKWTIDMKAVSKLRERSE 441
BLAST of Lag0035322 vs. NCBI nr
Match:
PON62892.1 (hypothetical protein PanWU01x14_135680 [Parasponia andersonii])
HSP 1 Score: 109.8 bits (273), Expect = 3.9e-20
Identity = 66/170 (38.82%), Postives = 92/170 (54.12%), Query Frame = 0
Query: 101 VVVRGVPVDWSPRAINALFNVQDFPHTAFNEMMVAPSNDQLNAAVREVGIEGAQWRLSKM 160
V VRGV V S AIN ++ + D P +E + A + +L + V I GA+W +S
Sbjct: 9 VYVRGVQVPLSTEAINTIYGLGD-PVDEHSEFVEAITEPELATVLETVAIAGAEWNVSSQ 68
Query: 161 EKRTLQATYLRSEANTWIGFIKLRLLPTTHDSTVSRDRVLLAFSILRSMSIDVGKIISSE 220
T + L A W F+K RLLPTTH TVS++RVLL +S+L SI+VG+II E
Sbjct: 69 GAYTCLRSSLNPPAKVWYHFLKSRLLPTTHGKTVSKERVLLLYSMLTGKSINVGQIIHRE 128
Query: 221 ILDDWRKNVGKLFFPNTITMLCQRAGVPEDEDDVPLIDKRIIDTPNLARL 271
I + G LFFP+ IT +C A P ++ L + ID +AR+
Sbjct: 129 ICAYAARKSGALFFPSLITRMCCNARAPYLVNEEKLHNTGEIDAIAVARI 177
BLAST of Lag0035322 vs. NCBI nr
Match:
PON78020.1 (hypothetical protein PanWU01x14_023740 [Parasponia andersonii])
HSP 1 Score: 108.6 bits (270), Expect = 8.7e-20
Identity = 71/177 (40.11%), Postives = 96/177 (54.24%), Query Frame = 0
Query: 101 VVVRGVPVDWSPRAINALFNVQD--FPHTAFNEMMVAPSNDQLNAAVREVGIEGAQWRLS 160
+ VRGV V WS AINA+F + D H+ F E + P +L + V GA+W +S
Sbjct: 32 IYVRGVQVSWSEEAINAVFGLGDPVDEHSEFIENITEP---ELITVLETVAAAGAEWNVS 91
Query: 161 KMEKRTLQATYLRSEANTWIGFIKLRLLPTTHDSTVSRDRVLLAFSILRSMSIDVGKIIS 220
T + L A W F+K RLLPTTH VS+DR+LL S+L SI+VG++I
Sbjct: 92 AQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKIVSKDRMLLLHSMLNGKSINVGRMIH 151
Query: 221 SEILDDWRKNVGKLFFPNTITMLCQRAGVPEDEDDVPLIDKRIIDTPNLARLQRTQE 276
SEI + G LFFP+ IT LC+ A +E+ L + ID +AR+ TQE
Sbjct: 152 SEIRACAAQKTGALFFPSLITRLCRNAPFLVNEE--KLHNTGEIDAIAVARI--TQE 201
BLAST of Lag0035322 vs. ExPASy TrEMBL
Match:
A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)
HSP 1 Score: 115.5 bits (288), Expect = 3.4e-22
Identity = 75/192 (39.06%), Postives = 101/192 (52.60%), Query Frame = 0
Query: 82 EEPRLPYHR-FINNLA--RAKYVVVRGVPVDWSPRAINALFNVQDFPHTAFNEMMVAPSN 141
E+P +P R F NL V VRGV V WS AINA+F + D P +E + +
Sbjct: 80 EDPIVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGD-PVDEHSEFIQNITQ 139
Query: 142 DQLNAAVREVGIEGAQWRLSKMEKRTLQATYLRSEANTWIGFIKLRLLPTTHDSTVSRDR 201
L + V GA+W +S T + L A W F+K RLLPTTH TVS+DR
Sbjct: 140 QDLITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKTVSKDR 199
Query: 202 VLLAFSILRSMSIDVGKIISSEILDDWRKNVGKLFFPNTITMLCQRAGVPEDEDDVPLID 261
+LL S+L SI+VG++I SEI + G LFFP+ IT LC+ A P ++ L +
Sbjct: 200 MLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNARAPFLVNEEKLHN 259
Query: 262 KRIIDTPNLARL 271
ID +AR+
Sbjct: 260 TGEIDAIAVARI 270
BLAST of Lag0035322 vs. ExPASy TrEMBL
Match:
A0A2P5AGA5 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_335450 PE=4 SV=1)
HSP 1 Score: 115.2 bits (287), Expect = 4.5e-22
Identity = 77/197 (39.09%), Postives = 104/197 (52.79%), Query Frame = 0
Query: 82 EEPRLPYHR-FINNLAR--AKYVVVRGVPVDWSPRAINALFNVQDFPHTAFNEMMVAPSN 141
E+P +P R F NL V VRGV V WS AINA+F + D P +E + +
Sbjct: 71 EDPIVPLVREFYANLTDPVENTVYVRGVQVSWSEEAINAVFGLGD-PVDEHSEFIENITE 130
Query: 142 DQLNAAVREVGIEGAQWRLSKMEKRTLQATYLRSEANTWIGFIKLRLLPTTHDSTVSRDR 201
L + V + GA+W +S T + L A W F+K LLPTTH TVS+DR
Sbjct: 131 HDLITVLETVAVAGAEWNVSAQGAYTCIRSALTPAAKVWFHFLKSHLLPTTHGKTVSKDR 190
Query: 202 VLLAFSILRSMSIDVGKIISSEILDDWRKNVGKLFFPNTITMLCQRAGVPEDEDDVPLID 261
+LL S+L SI+VG++I SEI + G LFFP+ IT LC+ A P ++ L +
Sbjct: 191 MLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNARAPFLVNEEKLHN 250
Query: 262 KRIIDTPNLARLQRTQE 276
ID +AR+ TQE
Sbjct: 251 TGEIDAIAVARI--TQE 264
BLAST of Lag0035322 vs. ExPASy TrEMBL
Match:
A0A2P5CPE8 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_135680 PE=4 SV=1)
HSP 1 Score: 109.8 bits (273), Expect = 1.9e-20
Identity = 66/170 (38.82%), Postives = 92/170 (54.12%), Query Frame = 0
Query: 101 VVVRGVPVDWSPRAINALFNVQDFPHTAFNEMMVAPSNDQLNAAVREVGIEGAQWRLSKM 160
V VRGV V S AIN ++ + D P +E + A + +L + V I GA+W +S
Sbjct: 9 VYVRGVQVPLSTEAINTIYGLGD-PVDEHSEFVEAITEPELATVLETVAIAGAEWNVSSQ 68
Query: 161 EKRTLQATYLRSEANTWIGFIKLRLLPTTHDSTVSRDRVLLAFSILRSMSIDVGKIISSE 220
T + L A W F+K RLLPTTH TVS++RVLL +S+L SI+VG+II E
Sbjct: 69 GAYTCLRSSLNPPAKVWYHFLKSRLLPTTHGKTVSKERVLLLYSMLTGKSINVGQIIHRE 128
Query: 221 ILDDWRKNVGKLFFPNTITMLCQRAGVPEDEDDVPLIDKRIIDTPNLARL 271
I + G LFFP+ IT +C A P ++ L + ID +AR+
Sbjct: 129 ICAYAARKSGALFFPSLITRMCCNARAPYLVNEEKLHNTGEIDAIAVARI 177
BLAST of Lag0035322 vs. ExPASy TrEMBL
Match:
A0A2P5DXM3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE=4 SV=1)
HSP 1 Score: 108.6 bits (270), Expect = 4.2e-20
Identity = 71/177 (40.11%), Postives = 96/177 (54.24%), Query Frame = 0
Query: 101 VVVRGVPVDWSPRAINALFNVQD--FPHTAFNEMMVAPSNDQLNAAVREVGIEGAQWRLS 160
+ VRGV V WS AINA+F + D H+ F E + P +L + V GA+W +S
Sbjct: 32 IYVRGVQVSWSEEAINAVFGLGDPVDEHSEFIENITEP---ELITVLETVAAAGAEWNVS 91
Query: 161 KMEKRTLQATYLRSEANTWIGFIKLRLLPTTHDSTVSRDRVLLAFSILRSMSIDVGKIIS 220
T + L A W F+K RLLPTTH VS+DR+LL S+L SI+VG++I
Sbjct: 92 AQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKIVSKDRMLLLHSMLNGKSINVGRMIH 151
Query: 221 SEILDDWRKNVGKLFFPNTITMLCQRAGVPEDEDDVPLIDKRIIDTPNLARLQRTQE 276
SEI + G LFFP+ IT LC+ A +E+ L + ID +AR+ TQE
Sbjct: 152 SEIRACAAQKTGALFFPSLITRLCRNAPFLVNEE--KLHNTGEIDAIAVARI--TQE 201
BLAST of Lag0035322 vs. ExPASy TrEMBL
Match:
A0A2P5BNT0 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_223230 PE=4 SV=1)
HSP 1 Score: 102.4 bits (254), Expect = 3.0e-18
Identity = 63/172 (36.63%), Postives = 91/172 (52.91%), Query Frame = 0
Query: 101 VVVRGVPVDWSPRAINALFNVQDF--PHTAFNEMMVAPSNDQLNAAVREVGIEGAQWRLS 160
V VRGV V S AIN ++ + D H+ F E + P +L + V I GA+W +S
Sbjct: 19 VYVRGVQVPLSAEAINTIYGLGDLVDEHSEFVEDITEP---ELAMVLETVAIAGAEWNVS 78
Query: 161 KMEKRTLQATYLRSEANTWIGFIKLRLLPTTHDSTVSRDRVLLAFSILRSMSIDVGKIIS 220
T + L A W F+K RLLPTTH VS++RVLL +S+L SI++G++I
Sbjct: 79 SQGVYTCLRSSLNPPAKIWYHFLKSRLLPTTHGKIVSKERVLLLYSMLTGKSINMGRMIH 138
Query: 221 SEILDDWRKNVGKLFFPNTITMLCQRAGVPEDEDDVPLIDKRIIDTPNLARL 271
EI + G LFFP+ I +C+ A P ++ L + ID +AR+
Sbjct: 139 REICACAARKSGALFFPSLIIRMCRNARAPYLVNEEKLHNTGEIDAIAVARI 187
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
PON46472.1 | 7.1e-22 | 39.06 | hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii] | [more] |
PON35554.1 | 9.3e-22 | 39.09 | hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii] | [more] |
XP_024971944.1 | 3.0e-20 | 35.75 | uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus] | [more] |
PON62892.1 | 3.9e-20 | 38.82 | hypothetical protein PanWU01x14_135680 [Parasponia andersonii] | [more] |
PON78020.1 | 8.7e-20 | 40.11 | hypothetical protein PanWU01x14_023740 [Parasponia andersonii] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A2P5BCG4 | 3.4e-22 | 39.06 | Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... | [more] |
A0A2P5AGA5 | 4.5e-22 | 39.09 | Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... | [more] |
A0A2P5CPE8 | 1.9e-20 | 38.82 | Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_135680 PE... | [more] |
A0A2P5DXM3 | 4.2e-20 | 40.11 | Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE... | [more] |
A0A2P5BNT0 | 3.0e-18 | 36.63 | Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... | [more] |
Match Name | E-value | Identity | Description | |