Lag0035310 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0035310
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr3: 18571015 .. 18571873 (-)
RNA-Seq ExpressionLag0035310
SyntenyLag0035310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACAAGAAAAATAGCCAGAGGATGCGCGAGAGGGACAGACAGAAGTTGTACCAGAAAAAGGTAATGAGCAGGAGGTGCAAGAGGCTCGTGTTGAGGTTATCATGCCGAAAGTGTCGCGACGTCCGCCGCCGGAAGCAAAAGGTCGGTCCTGTCAAGGTAGTCCGAACTGATACTTCGTCACCACCGTCGACGAATTCTGAGAAAGAGGACACAGAGAGAGAAGAACTGGAGAAAAAAGAGGTTGAAGACAAATCAAGAGAAAAAGGCAGAGGAGGAAGTTCTGCCCCAACAAAGGGACGACAGGGGCAAAGGTGTTGCTGCAGCATCGTCTGAGCCTGACGAAATAGAAGAGCTGCAGCTGTCGTATGCCCGCTTCGTCAACAACTTGGCTCGAGCAAAATATATTGAGATGTTAAAAAGGGATTTCTTGTTTGAACGAGGTTTTGGCGAGGATCTGCCACCGTTTTTGAGGACCGACATTACAAACCACAGCTGTGAGTTGTTTTGTTAAAAGCTTGAATCTGTGGATGCGCATGTAGTGAACGAATTTTATGCAAATATTGATGACGAAGAGGGTTTCCAAGTTATCGCTCGAGGTATAGCAGTTGACTGGAGTCCTGGTGCTATTAACTCCCTATACAACCTTCGGGATTTCCCCCACGCAGGATACAATGAGATGGTTGTGGCGCCATCTAATGAGCAATTAAACGCTGTTGTTCTGGAAGTTGGTGTTGAAGGGGCACAGTGGAGACTTTCAAAAACAGAGATAAGGACATTCCAGGGCAGCCTATCTAAAGAAGGAAGCAAATACATGGATGGGATTCATCAAGCAAAGGTTGCTTCCAACGACTCATGA

mRNA sequence

ATGCACAAGAAAAATAGCCAGAGGATGCGCGAGAGGGACAGACAGAAGTTGTACCAGAAAAAGGTAATGAGCAGGAGGTGCAAGAGGCTCGTGTTGAGGTTATCATGCCGAAAGTGTCGCGACGTCCGCCGCCGGAAGCAAAAGGTCGGTCCTGTCAAGGTAGTCCGAACTGATACTTCGTCACCACCGTCGACGAATTCTGAGAAAGAGGACACAGAGAGAGAAGAACTGGAGAAAAAAGAGGTTGAAGACAAATCAAGAGAAAAAGGCAGAGGAGGAAGTTCTGCCCCAACAAAGGGACGACAGGGGCAAAGGGATTTCTTGTTTGAACGAGGTTTTGGCGAGGATCTGCCACCGTTTTTGAGGACCGACATTACAAACCACAGCTTGAACGAATTTTATGCAAATATTGATGACGAAGAGGGTTTCCAAGTTATCGCTCGAGGTATAGCAGTTGACTGGAGTCCTGGTGCTATTAACTCCCTATACAACCTTCGGGATTTCCCCCACGCAGGATACAATGAGATGGTTGTGGCGCCATCTAATGAGCAATTAAACGCTGTTGTTCTGGAAGTTGGTGTTGAAGGGGCACAGTGGAGACTTTCAAAAACAGAGATAAGGACATTCCAGGGCAGCCTATCTAAAGAAGGAAGCAAATACATGGATGGGATTCATCAAGCAAAGGTTGCTTCCAACGACTCATGA

Coding sequence (CDS)

ATGCACAAGAAAAATAGCCAGAGGATGCGCGAGAGGGACAGACAGAAGTTGTACCAGAAAAAGGTAATGAGCAGGAGGTGCAAGAGGCTCGTGTTGAGGTTATCATGCCGAAAGTGTCGCGACGTCCGCCGCCGGAAGCAAAAGGTCGGTCCTGTCAAGGTAGTCCGAACTGATACTTCGTCACCACCGTCGACGAATTCTGAGAAAGAGGACACAGAGAGAGAAGAACTGGAGAAAAAAGAGGTTGAAGACAAATCAAGAGAAAAAGGCAGAGGAGGAAGTTCTGCCCCAACAAAGGGACGACAGGGGCAAAGGGATTTCTTGTTTGAACGAGGTTTTGGCGAGGATCTGCCACCGTTTTTGAGGACCGACATTACAAACCACAGCTTGAACGAATTTTATGCAAATATTGATGACGAAGAGGGTTTCCAAGTTATCGCTCGAGGTATAGCAGTTGACTGGAGTCCTGGTGCTATTAACTCCCTATACAACCTTCGGGATTTCCCCCACGCAGGATACAATGAGATGGTTGTGGCGCCATCTAATGAGCAATTAAACGCTGTTGTTCTGGAAGTTGGTGTTGAAGGGGCACAGTGGAGACTTTCAAAAACAGAGATAAGGACATTCCAGGGCAGCCTATCTAAAGAAGGAAGCAAATACATGGATGGGATTCATCAAGCAAAGGTTGCTTCCAACGACTCATGA

Protein sequence

MHKKNSQRMRERDRQKLYQKKVMSRRCKRLVLRLSCRKCRDVRRRKQKVGPVKVVRTDTSSPPSTNSEKEDTEREELEKKEVEDKSREKGRGGSSAPTKGRQGQRDFLFERGFGEDLPPFLRTDITNHSLNEFYANIDDEEGFQVIARGIAVDWSPGAINSLYNLRDFPHAGYNEMVVAPSNEQLNAVVLEVGVEGAQWRLSKTEIRTFQGSLSKEGSKYMDGIHQAKVASNDS
Homology
[Close]
BLAST of Lag0035310 vs. NCBI nr
Match: MBA0853900.1 (hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-04
Identity = 28/81 (34.57%), Postives = 45/81 (55.56%), Query Frame = 0 

Query: 130 LNEFYANIDDEEGFQVIARGIAVDWSPGAINSLYNLRDFPHAGYNEMVVAPSNEQLNAVV 189
           ++EFYAN+   E  +V  RGI V  S  AIN  + L +F   GY+ ++     E L  ++
Sbjct: 10  VHEFYANLTSNELTEVSVRGIKVPISSNAINEFFELPNFEDDGYSSLMRNIEAENLQEIL 69

Query: 190 LEVGVEGAQWRLSKTEIRTFQ 211
            E+ + G++W +SK E   F+
Sbjct: 70  KELTILGSKWTVSKNETHIFR 90

[Close]
BLAST of Lag0035310 vs. ExPASy TrEMBL
Match: A0A7J9L5C3 (Uncharacterized protein (Fragment) OS=Gossypium schwendimanii OX=34291 GN=Goshw_023672 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.5e-05
Identity = 28/81 (34.57%), Postives = 45/81 (55.56%), Query Frame = 0 

Query: 130 LNEFYANIDDEEGFQVIARGIAVDWSPGAINSLYNLRDFPHAGYNEMVVAPSNEQLNAVV 189
           ++EFYAN+   E  +V  RGI V  S  AIN  + L +F   GY+ ++     E L  ++
Sbjct: 10  VHEFYANLTSNELTEVSVRGIKVPISSNAINEFFELPNFEDDGYSSLMRNIEAENLQEIL 69

Query: 190 LEVGVEGAQWRLSKTEIRTFQ 211
            E+ + G++W +SK E   F+
Sbjct: 70  KELTILGSKWTVSKNETHIFR 90

[Close]
BLAST of Lag0035310 vs. ExPASy TrEMBL
Match: A0A2P5CXV1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.1e-04
Identity = 34/114 (29.82%), Postives = 56/114 (49.12%), Query Frame = 0 

Query: 104 QRDFLFERGFGEDLPPFLRTDITNHS---------------LNEFYANIDDEEGFQVIAR 163
           ++ F+ +     + PPF+   IT H+               + EFYAN+ + +   V  R
Sbjct: 37  EKGFVGDNSKPLEKPPFIADVITQHNWQLFCAHPEDPIVPLVREFYANMTNPDDDTVYVR 96

Query: 164 GIAVDWSPGAINSLYNLRDFPHAGYNEMVVAPSNEQLNAVVLEVGVEGAQWRLS 203
           G+ V  S  AIN++Y L D P   ++E V A +  +L  V+  V + GA+W +S
Sbjct: 97  GVQVLLSSEAINTIYGLGD-PIDEHSEFVEAITEPELATVLETVAIAGAEWNVS 149

The following BLAST results are available for this feature:
BLAST of Lag0035310 vs. NCBI nr
Match NameE-valueIdentityDescription
MBA0853900.11.1e-0434.57hypothetical protein [Gossypium schwendimanii][more]
BLAST of Lag0035310 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0035310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J9L5C35.5e-0534.57Uncharacterized protein (Fragment) OS=Gossypium schwendimanii OX=34291 GN=Goshw_... [more]
A0A2P5CXV16.1e-0429.82Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE... [more]
BLAST of Lag0035310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0035310.1Lag0035310.1mRNA