Lag0035305 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0035305
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionIntegrase catalytic domain-containing protein
Locationchr3: 18436709 .. 18437158 (+)
RNA-Seq ExpressionLag0035305
SyntenyLag0035305
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAACCACCCATGATAGCACGATATCAGTAGATAGAGTGATGTTACTCTATTGCATTATGAAGGGGTTGGAGATCAATATTGGGAGCATAATTAGGGATGAGATTCTAGCCTGTGGAAGAAAACGAGCACGTAAAGTTTTCTTTGGATCACTCATCACCCAGCTTTGTCAAAGGGTGAAGATAGTTTCGGGCAAGGACGATGAGCGTCATTTCTTCAAGCCGACCATTGACCTGTCCTTGATCGGGAAGCTGCAACAGAACAACATCCAGAAGAAAGATAAAGACTCCACATCTCAGGCTACTCCACCATCAGGGTCGAATATAGCTTCTCCATCCCAGGACACTCCTATTACAGGGCCCTCTCTGTCATCGAAAGCCTTAGCCATTACCTACCGCCAGTTAGATCAAATCAGGGAAAACCTGAAGACATATTGGGCATATGCATAG

mRNA sequence

ATGCCAACCACCCATGATAGCACGATATCAGTAGATAGAGTGATGTTACTCTATTGCATTATGAAGGGGTTGGAGATCAATATTGGGAGCATAATTAGGGATGAGATTCTAGCCTGTGGAAGAAAACGAGCACGTAAAGTTTTCTTTGGATCACTCATCACCCAGCTTTGTCAAAGGGTGAAGATAGTTTCGGGCAAGGACGATGAGCGTCATTTCTTCAAGCCGACCATTGACCTGTCCTTGATCGGGAAGCTGCAACAGAACAACATCCAGAAGAAAGATAAAGACTCCACATCTCAGGCTACTCCACCATCAGGGTCGAATATAGCTTCTCCATCCCAGGACACTCCTATTACAGGGCCCTCTCTGTCATCGAAAGCCTTAGCCATTACCTACCGCCAGTTAGATCAAATCAGGGAAAACCTGAAGACATATTGGGCATATGCATAG

Coding sequence (CDS)

ATGCCAACCACCCATGATAGCACGATATCAGTAGATAGAGTGATGTTACTCTATTGCATTATGAAGGGGTTGGAGATCAATATTGGGAGCATAATTAGGGATGAGATTCTAGCCTGTGGAAGAAAACGAGCACGTAAAGTTTTCTTTGGATCACTCATCACCCAGCTTTGTCAAAGGGTGAAGATAGTTTCGGGCAAGGACGATGAGCGTCATTTCTTCAAGCCGACCATTGACCTGTCCTTGATCGGGAAGCTGCAACAGAACAACATCCAGAAGAAAGATAAAGACTCCACATCTCAGGCTACTCCACCATCAGGGTCGAATATAGCTTCTCCATCCCAGGACACTCCTATTACAGGGCCCTCTCTGTCATCGAAAGCCTTAGCCATTACCTACCGCCAGTTAGATCAAATCAGGGAAAACCTGAAGACATATTGGGCATATGCATAG

Protein sequence

MPTTHDSTISVDRVMLLYCIMKGLEINIGSIIRDEILACGRKRARKVFFGSLITQLCQRVKIVSGKDDERHFFKPTIDLSLIGKLQQNNIQKKDKDSTSQATPPSGSNIASPSQDTPITGPSLSSKALAITYRQLDQIRENLKTYWAYA
Homology
BLAST of Lag0035305 vs. NCBI nr
Match: MCI09484.1 (hypothetical protein [Trifolium medium])

HSP 1 Score: 79.3 bits (194), Expect = 3.0e-11
Identity = 50/151 (33.11%), Postives = 84/151 (55.63%), Query Frame = 0

Query: 1   MPTTHDSTISVDRVMLLYCIMKGLEINIGSIIRDEILACGRKRARK--VFFGSLITQLCQ 60
           MPTTH+ T++  R++LL+CI+ G +IN+G II  EI+ C  K++ +  ++F  LIT+LC+
Sbjct: 40  MPTTHNETVNKARLVLLHCIIAGQKINVGRIIHQEIVNCSAKKSNEGMLYFPCLITELCK 99

Query: 61  RVKI-VSGKDDERHFFKPTIDLSLIGKLQQNNIQKKDKDSTSQATPPSGSNIASPSQDTP 120
           +  + VSG+D+    F+PT          Q  I+   K +T +           P Q  P
Sbjct: 100 KNLVHVSGRDE---VFQPT------NSFDQKAIETLLKGNTGR----------KPRQQLP 159

Query: 121 ITGPSLSSKALAITYRQLDQIRENLKTYWAY 149
               S ++ + A+   +  + R+N+KTYWA+
Sbjct: 160 EATTSAAAVSQAVDAEEFMKFRKNMKTYWAW 171

BLAST of Lag0035305 vs. NCBI nr
Match: XP_024971944.1 (uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus])

HSP 1 Score: 74.7 bits (182), Expect = 7.5e-10
Identity = 37/103 (35.92%), Postives = 64/103 (62.14%), Query Frame = 0

Query: 2   PTTHDSTISVDRVMLLYCIMKGLEINIGSIIRDEILACGRKRARKVFFGSLITQLCQRVK 61
           PTTHDS+ISV++++LLYC++ G  IN+G ++   IL C ++R  K+FF SLI +L  +  
Sbjct: 350 PTTHDSSISVEKIILLYCVVTGRTINVGKVVEKAILYCSKRRQGKLFFPSLIHKLLMQAG 409

Query: 62  IVSGKDD---ERHFFKPTIDLSLIGKLQQNNIQKKDKDSTSQA 102
           +    DD   +    K TID+  + KL++ + + ++    ++A
Sbjct: 410 VPEYTDDLVIKECEEKWTIDMKAVSKLRERSERGRELPGVTRA 452

BLAST of Lag0035305 vs. NCBI nr
Match: PON59596.1 (hypothetical protein PanWU01x14_158080 [Parasponia andersonii])

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-09
Identity = 39/108 (36.11%), Postives = 63/108 (58.33%), Query Frame = 0

Query: 1   MPTTHDSTISVDRVMLLYCIMKGLEINIGSIIRDEILACGRKRARKVFFGSLITQLCQRV 60
           +PTTH  T+S DR++LLY ++ G  IN+G +I  EI AC  +++  +FF SLITQLC+  
Sbjct: 57  LPTTHGKTVSKDRMLLLYSMLTGKSINVGRMIHSEIRACAARKSGALFFPSLITQLCRNA 116

Query: 61  KIVSGKDDERHFFKPTIDLSLIGKL-QQNNIQKKDKDSTSQATPPSGS 108
           +     ++E+      ID   + ++ Q+   +   + STS+ T  S S
Sbjct: 117 RAPFLVNEEKLHITGEIDAIAVARITQEGQTELTQQPSTSRPTVASSS 164

BLAST of Lag0035305 vs. NCBI nr
Match: KAF4375842.1 (hypothetical protein G4B88_026421 [Cannabis sativa])

HSP 1 Score: 68.6 bits (166), Expect = 5.4e-08
Identity = 46/148 (31.08%), Postives = 75/148 (50.68%), Query Frame = 0

Query: 1    MPTTHDSTISVDRVMLLYCIMKGLEINIGSIIRDEILACGRKRARKVFFGSLITQLCQRV 60
            +PT+HDST+S +R+ +LYCI+KG +IN+G +I  EI  C  +   K+FF  LIT+ C+  
Sbjct: 886  LPTSHDSTVSRERMWMLYCIVKGKKINVGKVIAKEIFECAHRVKGKLFFSCLITEKCRCA 945

Query: 61   KIVSGKDDERHFFKPTIDLSLIGKLQQNNIQKKDKDSTSQATPPSGSNIASPSQDTPITG 120
             +    D++               + +  +   + D   + T PS +  AS S+D P+  
Sbjct: 946  NVPMLNDED--------------PVPRKGVVSFEPDRAPKRTTPS-TTTASTSRD-PMDE 1005

Query: 121  PSLSSKALAITYRQLDQIRENLKTYWAY 149
                 +AL        Q+ E L+T+W Y
Sbjct: 1006 RLSKHEALQ------QQMCERLQTHWNY 1011

BLAST of Lag0035305 vs. NCBI nr
Match: PON78020.1 (hypothetical protein PanWU01x14_023740 [Parasponia andersonii])

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-07
Identity = 45/149 (30.20%), Postives = 73/149 (48.99%), Query Frame = 0

Query: 1   MPTTHDSTISVDRVMLLYCIMKGLEINIGSIIRDEILACGRKRARKVFFGSLITQLCQRV 60
           +PTTH   +S DR++LL+ ++ G  IN+G +I  EI AC  ++   +FF SLIT+LC+  
Sbjct: 116 LPTTHGKIVSKDRMLLLHSMLNGKSINVGRMIHSEIRACAAQKTGALFFPSLITRLCRNA 175

Query: 61  KIVSGKDDERHFFKPTIDLSLIGKLQQNNIQKKDKDSTSQATPPSGSNIASPSQDTPITG 120
             +   ++E+      ID   + ++ Q        +ST Q   PS S  A+ S       
Sbjct: 176 PFL--VNEEKLHNTGEIDAIAVARITQEG----PTESTQQ---PSSSRPAAASSSRTNGD 235

Query: 121 PSLSSKALAITYRQLDQIRENLKTYWAYA 150
                KAL     Q +   +  + +WAY+
Sbjct: 236 VLQQLKALEQRLSQQEHTHKQQQQFWAYS 255

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
MCI09484.13.0e-1133.11hypothetical protein [Trifolium medium][more]
XP_024971944.17.5e-1035.92uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus][more]
PON59596.11.7e-0936.11hypothetical protein PanWU01x14_158080 [Parasponia andersonii][more]
KAF4375842.15.4e-0831.08hypothetical protein G4B88_026421 [Cannabis sativa][more]
PON78020.12.0e-0730.20hypothetical protein PanWU01x14_023740 [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0035305.1Lag0035305.1mRNA