Lag0035297 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATACACTGACTTCAGCTAATCCCTCTGCTTCCAGCATTGATGGATCAGAGGCACAGAACTCTCGGAGTCCTTATTTCCTACACCACAGTGATACTTCGAATCTGGTACTTGTCTCTGAACTTCTTACTGATGAGAATTACGTACCTTGGAGTTGATCGATGGTGTTGGCGCTTTCAATCAAGAACAAATTAGGTTTCATAGATGGATCAATAGTTAAACCTAGTGGACAGCTCTTGCCGCTTTGGGCGAGGAATAATAATATTGTGATAGCATGGATCTTGAATTCAGTATCGAAAAGTATATCATCGAGCATCCTGTGCACCGATTCAGCCCAGACAATCTGGCTTGATCTTAAGGATCGGTTTGCCAAGAAGAATGGACCTCGAATCTTCCACCTCAAGCAAGAAATGAGCACTCTCCGCCAAGAACAACAAGCGGTAACCATGTACTATGCCAAACTCAAGAGCCTCTGGGATGAATATGTGACTTTTCGACCTGGATGTACTTGTGGTGCCTGTACTTGTGGAGGAATGCAATCAATTAAAACATTCTTCCAATTCGAGCATCTGCTTAATTTCCTAATGGGACTCAATGATATTTATGGGCATTCATGACCGCAGATTCTATTGATGGATCCACCCCCTGCTGTGAACAAAGCTTTTTCCCTAATTGTCCAAGAAGAAGAGCAACACGTTCATCTTCCAATTGTCCAAATTGAATTTGTTCACACGAGACTTCGGGGACGGAGACACGTGGAATAAACAATATATTTGTATTTATGTAATATGCGTGTGGGTGTACAATCTCTAACTTTAATCCTCTGATTCTCTCTCTTAAATATATAAACTTTGGTCTCTAGCTTCTTAATCTTCTTGGGCTGGTTTGTTGAGCTTCTTGGATGATCGGCTTGCTAGGTTGATGATCTCTTGGATCGGCCTGTTGGCTTGATGATCTTTTTGGATGATCGGCCTGCTGGCTTAATGATCTCTTGGATCGGCCTGTTGTGACTTATTGATCTTCTTGGATGATCGGCATGTTGGCTTGTTGATCTTCTTGGATGATCAGTCTACTGGCTTAATGATCTGTTCGATCGGTTGGCTTGTTGATCTTCTTGGATGATCGGCCTGCTGACTTGTTGATCTTCTTGATCGGTCGGTTGGCTTGTTGATCTCTTGGATGATCGGCCTGCTGACTTGTTGATCTTCTTGATCGGTCAGTTGGCTTGTTGATCTCTTGGATCAGCCTGTTGGCTTGATGATCTGTTGGATCGGCTTGTTAGCTTGTTGATCCTCTTGGATGATCGGCCTGCTGACTTGTTTATCTTCTTGATCGGTCGGTTGGCTTGTTGATCTCTTTTTAGAGTCTTCTAGTAATCAAACCTTCTGAGTCTTGAGTTGGTTGAATTCTGAATCTTGGATCTTCTGAATTCTCTAGACTCTCTGACTTCTAATGACTCTGGACTCTGGCAGAATTCTCTGGACTATGAGTTCTCTGATCTGAATCTCCGAATCTGA ATGGATACACTGACTTCAGCTAATCCCTCTGCTTCCAGCATTGATGGATCAGAGGCACAGAACTCTCGGAGTCCTTATTTCCTACACCACAGTGATACTTCGAATCTGAACAAATTAGGTTTCATAGATGGATCAATAGTTAAACCTAGTGGACAGCTCTTGCCGCTTTGGGCGAGGAATAATAATATTGTGATAGCATGGATCTTGAATTCAGTATCGAAAAGTATATCATCGAGCATCCTGTGCACCGATTCAGCCCAGACAATCTGGCTTGATCTTAAGGATCGGTTTGCCAAGAAGAATGGACCTCGAATCTTCCACCTCAAGCAAGAAATGAGCACTCTCCGCCAAGAACAACAAGCGGTAACCATGTACTATGCCAAACTCAAGAGCCTCTGGGATGAATATGTGACTTTTCGACCTGGATGTACTTGTGGTGCCTCCTGTTGGCTTGATGATCTGTTGGATCGGCTTGTTAGCTTGTTGATCCTCTTGGATGATCGGCCTGCTGACTTGTTTATCTTCTTGATCGACTCTCTGACTTCTAATGACTCTGGACTCTGGCAGAATTCTCTGGACTATGAGTTCTCTGATCTGAATCTCCGAATCTGA ATGGATACACTGACTTCAGCTAATCCCTCTGCTTCCAGCATTGATGGATCAGAGGCACAGAACTCTCGGAGTCCTTATTTCCTACACCACAGTGATACTTCGAATCTGAACAAATTAGGTTTCATAGATGGATCAATAGTTAAACCTAGTGGACAGCTCTTGCCGCTTTGGGCGAGGAATAATAATATTGTGATAGCATGGATCTTGAATTCAGTATCGAAAAGTATATCATCGAGCATCCTGTGCACCGATTCAGCCCAGACAATCTGGCTTGATCTTAAGGATCGGTTTGCCAAGAAGAATGGACCTCGAATCTTCCACCTCAAGCAAGAAATGAGCACTCTCCGCCAAGAACAACAAGCGGTAACCATGTACTATGCCAAACTCAAGAGCCTCTGGGATGAATATGTGACTTTTCGACCTGGATGTACTTGTGGTGCCTCCTGTTGGCTTGATGATCTGTTGGATCGGCTTGTTAGCTTGTTGATCCTCTTGGATGATCGGCCTGCTGACTTGTTTATCTTCTTGATCGACTCTCTGACTTCTAATGACTCTGGACTCTGGCAGAATTCTCTGGACTATGAGTTCTCTGATCTGAATCTCCGAATCTGA MDTLTSANPSASSIDGSEAQNSRSPYFLHHSDTSNLNKLGFIDGSIVKPSGQLLPLWARNNNIVIAWILNSVSKSISSSILCTDSAQTIWLDLKDRFAKKNGPRIFHLKQEMSTLRQEQQAVTMYYAKLKSLWDEYVTFRPGCTCGASCWLDDLLDRLVSLLILLDDRPADLFIFLIDSLTSNDSGLWQNSLDYEFSDLNLRI Homology
BLAST of Lag0035297 vs. NCBI nr
Match: XP_038895765.1 (uncharacterized protein LOC120083929 [Benincasa hispida]) HSP 1 Score: 179.9 bits (455), Expect = 2.2e-41 Identity = 87/149 (58.39%), Postives = 108/149 (72.48%), Query Frame = 0
BLAST of Lag0035297 vs. NCBI nr
Match: KAA0032807.1 (UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK30365.1 UBN2_3 domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 173.7 bits (439), Expect = 1.6e-39 Identity = 86/152 (56.58%), Postives = 104/152 (68.42%), Query Frame = 0
BLAST of Lag0035297 vs. NCBI nr
Match: XP_008457013.1 (PREDICTED: uncharacterized protein LOC103496792 [Cucumis melo]) HSP 1 Score: 173.3 bits (438), Expect = 2.1e-39 Identity = 86/152 (56.58%), Postives = 104/152 (68.42%), Query Frame = 0
BLAST of Lag0035297 vs. NCBI nr
Match: XP_022154973.1 (uncharacterized protein LOC111022117 [Momordica charantia]) HSP 1 Score: 169.1 bits (427), Expect = 4.0e-38 Identity = 83/159 (52.20%), Postives = 111/159 (69.81%), Query Frame = 0
BLAST of Lag0035297 vs. NCBI nr
Match: XP_022154608.1 (uncharacterized protein LOC111021831 [Momordica charantia]) HSP 1 Score: 161.4 bits (407), Expect = 8.3e-36 Identity = 83/171 (48.54%), Postives = 114/171 (66.67%), Query Frame = 0
BLAST of Lag0035297 vs. ExPASy TrEMBL
Match: A0A5A7SU21 (UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold575G00310 PE=4 SV=1) HSP 1 Score: 173.7 bits (439), Expect = 7.8e-40 Identity = 86/152 (56.58%), Postives = 104/152 (68.42%), Query Frame = 0
BLAST of Lag0035297 vs. ExPASy TrEMBL
Match: A0A1S3C5T4 (uncharacterized protein LOC103496792 OS=Cucumis melo OX=3656 GN=LOC103496792 PE=4 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 1.0e-39 Identity = 86/152 (56.58%), Postives = 104/152 (68.42%), Query Frame = 0
BLAST of Lag0035297 vs. ExPASy TrEMBL
Match: A0A6J1DLQ9 (uncharacterized protein LOC111022117 OS=Momordica charantia OX=3673 GN=LOC111022117 PE=4 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 1.9e-38 Identity = 83/159 (52.20%), Postives = 111/159 (69.81%), Query Frame = 0
BLAST of Lag0035297 vs. ExPASy TrEMBL
Match: A0A6J1DKR8 (uncharacterized protein LOC111021831 OS=Momordica charantia OX=3673 GN=LOC111021831 PE=4 SV=1) HSP 1 Score: 161.4 bits (407), Expect = 4.0e-36 Identity = 83/171 (48.54%), Postives = 114/171 (66.67%), Query Frame = 0
BLAST of Lag0035297 vs. ExPASy TrEMBL
Match: A0A7J0FKC9 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein OS=Actinidia rufa OX=165716 GN=Acr_13g0000100 PE=4 SV=1) HSP 1 Score: 151.4 bits (381), Expect = 4.1e-33 Identity = 80/166 (48.19%), Postives = 101/166 (60.84%), Query Frame = 0
BLAST of Lag0035297 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 74.3 bits (181), Expect = 1.2e-13 Identity = 37/113 (32.74%), Postives = 63/113 (55.75%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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