Lag0035282 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0035282
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr3: 17995349 .. 17998821 (+)
RNA-Seq Expression	Lag0035282
Synteny	Lag0035282

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAACTCATTGCATAGGATTCCTCCACCTGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTAGGTCGTATCACATAGTGTCACCAGGATAAGGCTGGGATAAGGTACCCAGCCTTATCCATATACTATAGACCTTTTAGGTTGTTACTTGGACACCGATCCCCATATGTCCCCACATACTAGTCCAAGTTTCATTTAAACAACCCTGGATCTTAGTTTATTGGATTTAGGGTTTATTAATGCAAACTCGATTATTCAATAACCAATTTACTGAATTACTCAAATAACGCTTTATTGAAATCGATTAATTTGTTTCATTTACTATCTACGAGTTTTAGGGCATAAAACCCAACAAAAACCACTCTAACTACTGTGTTACAATTTTAGTGCCAACCACATGGTGGCAAAGAAGTTTTCCATGCTAAAACAAAATACATAGAGATTGACCATCACTTTATCAAAGAAAAAGCATTGTTCGTGGTCATCTAATTACAAAATTTGTGTCATCCACTGATTAAGTAATTCATATATTTATGAAAGCACTACGAAAGGAAAATTGTAAGGGTCTAAGGAGCAAACTAGACATGTATGAGATACCCACTAGTTTGGGGAAGATGTGAATTTCTAGATTTAGTTTACTCTTCATCTGTCACAATTACATGACAGTAAAAATGGCAATCAATCTCATTTACATTCCAAAAACTGATGTGTAGGAAGATTGAACTTTCTGGAGACATGAAAATCTAAAAGAAATAAACCCACAATTCAACTCCATATAAATATAATCAACCTCTCAATACTCGGTTCATTCCCACACAAATCAATAGAATTCTACATATATTATTTCCTCTACATCATTATAACTCCTTCCTTTACTGTTAGGGTCTGACTTACCTTATGAGGACCACTACTTTATTATATAACTAATTCTAAGTTGTATTTTTTCTATCTTTCTATGGAGGGTAGGCGTCAAAAGTGATCATAGCTCACCGATAATTGACATGTATACTCGATTAAGAGGTCAAAGGTTCGAATCTCCAACCTTCAAATGTTATTGGACTCACAAAAAGAATATGGAGAGTAGGTGTTTCTCTTCTTTGGTCGATTAAGAAACGATATATATCTAAAGAAGATATATAGAAGTAGTTCTTGGACATCATCTATGAAACATATATCAATTAAAAAAACTTCAAGAACATAGATGGGTGAGATAAAGGAGAATTAGAAAATGAGGGTTTTGATCTTGAAAAAATCTATTTGATAACTTGCATTTTTATCCAACTTAAATGTATAGTTCAATTAGTTAAGGTATTAGTAACTTTTTGGATCGTAGATTCAAACATTACACCCGTGTTTGAACTGACATATTTGAGTTACCTATTGTACAACTCACTTACCATTTAGATTAGGATTCCAAATTGAATTTCACAACCGATTGTCCAATAATGGAACCGTTTCTTTCTGATCTCCATCAAAAGCTTGCTGTGATTATTCATATATAGAGAGAGAAAGAGAGATGGATTAATTAAAAAAAAAAAAAAAAAAAACCTTCCAATTTATGTAAGATGCTTTTTTGGGACAGTACATCTCAGTGTGTTTGAGATTTCCTTTCTTGACCATTATAAAACAGATTCAGTCAAATGATGAAGTCAGTTCATTTGTTTTATTTTTCAGAAAGTATATCATTAGAAATAGGATTTTTACTCTAAACATGGTAATGTGAGTCAGCTTTCATCTTAAATTTTTAATTTTTTTTTTTTTTATCAAATTTAACCTTGGTATGGATAAGTGTTGGCAATATTTACAGTTGTTTACCTATTCATTTTAACAAGTTACAAAAGATGATGATAATAATAAATAAATAAAAGCCTCCCAACATACTAATCTCAACAAAAATCAATGCACTACATCAAGCTCATCCATTTGAACAAAAAGTTTGTCAATATAGTGTTATCTTTATCTAAAGCTCAATCACTTTTTGTGTCAAGTCCATCAGGAGGATATTTTTCAATCAATTCTTCAAATATAAGCCTAATAGAAGGTAACAATTGCATCATCTATCCGAGTCATTGAAAGCCTACGGTAAGAAAATTGATCCACATTAACAAGTTCAGGGACAATAGTTGAGTTTTTCCTTTAAAAATATGGGAGGGGTAAGGAACTTTCAAACTATAAACAAGGCTACTAATGTGTTATCTTGTTAAAAATTATACTTAGGTTGGCTAAGTAATTTCAATTTATTATTCTCTTCATTTATTTTATTATTATTATTGTTATTATTTTGAATTCAACCATGAATGTATATACGGGATGCTCCAGTAAAGGAGGTGTGACGTCTGAGTGAGAGGGATCCTAAGGACATGAAAGTATGGTCAAGATAAACTTAAAAAGAATTGATAGATACTATCTATACCAACAATGTGCACCTTCCTTTTCGGTGGCTCATTCATAGGAACTTCGAAGTTAAGCGTGCTTGGCTTGTCACCTCTTGGGAATCTTTCCTAGGAAGCATGTGAGTGAGGACAAAGCATGCTAAAAGGATCCCGTGTTGGTTTGTGGGGACCGTCTTCACTCTTAGAAGGGATACAAAAAAGCATGGTGATGTGGCGAAGTCGCAAGAGAATGTTGGGGTCGTTCAGGTGTTGAATTTGAAAATCCTAGACTTGAGACATACATAATATGCATATATTAACCCAATTGAATTATGTTCATGTTGCGTATTATTCCCTCCCTTTAACCTTTTTATATGTTAAACAAGGATTTATGCAGATTCAACATAATTGGGATATGAAACTGATGTAAATGTAGTAAAAAGTAAAATACACGATAATCAATGGGTTTTAAGTGTAGCATTAATAACTTATTACTATGATTGCAATCTATTAATGTGTAAGCTAATCAAGGATTACTATACTTATATAAATTGATGTTTATTACATAAAATAGAAACGTATATTTATATGCCAGTTAGTGATTGTACTAAAAAAAAAAGTCAATTGGTGGTTAATTAGTTTTTAAAAAATGATTTTATACTTGTGGTTATATATATATTTTGTTAAATGCTACATTTGTTATTTTGTATTAAAAAAATACATAATTATTTTCTATACCTTAAAAAAAATAATTTCTTAATGAAGTTCATCCTCTTTCAAAATATATATATATATATATATATAAATTATGATACCCATCCAAATTTTCGTATTAACTTATTGACCTTCTTTAAAGATGAATATAGTATTGAATAAAAGATGTATCAAATATTGTTATAGGTAATTGTGGACCGCTCCGATATACAAGGAGCTGACGATGACAACTCGACACGAGTTCAGAAACAAGACCGAAACATGGACTCCGGAGGCGAAACGGGCCAAAAGGTCGGACCAAGGTCAGAGGGATCTGCTCGGCCTCGACCTTGGGCCAAGGTCGAGGCCCGCTTGCGCGGGTAG

mRNA sequence

ATGCAAACTCATTGCATAGGATTCCTCCACCTGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTAATTGTGGACCGCTCCGATATACAAGGAGCTGACGATGACAACTCGACACGAGTTCAGAAACAAGACCGAAACATGGACTCCGGAGGCGAAACGGGCCAAAAGGTCGGACCAAGGTCAGAGGGATCTGCTCGGCCTCGACCTTGGGCCAAGGTCGAGGCCCGCTTGCGCGGGTAG

Coding sequence (CDS)

ATGCAAACTCATTGCATAGGATTCCTCCACCTGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTAATTGTGGACCGCTCCGATATACAAGGAGCTGACGATGACAACTCGACACGAGTTCAGAAACAAGACCGAAACATGGACTCCGGAGGCGAAACGGGCCAAAAGGTCGGACCAAGGTCAGAGGGATCTGCTCGGCCTCGACCTTGGGCCAAGGTCGAGGCCCGCTTGCGCGGGTAG

Protein sequence

MQTHCIGFLHLHVSYMDALDHCICIEYKVIVDRSDIQGADDDNSTRVQKQDRNMDSGGETGQKVGPRSEGSARPRPWAKVEARLRG

Homology

[Close]

BLAST of Lag0035282 vs. NCBI nr
Match: TYJ98643.1 (hypothetical protein E5676_scaffold507G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 6.0e-04
Identity = 21/28 (75.00%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 1  MQTHCIGFLHLHVSYMDALDHCICIEYK 29
          MQTHCIG+ H HV+YMDALD C+CI+YK
Sbjct: 1  MQTHCIGYPHSHVAYMDALDQCVCIKYK 28

[Close]

BLAST of Lag0035282 vs. NCBI nr
Match: KAA0047449.1 (hypothetical protein E6C27_scaffold498G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 6.0e-04
Identity = 21/28 (75.00%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 1  MQTHCIGFLHLHVSYMDALDHCICIEYK 29
          MQTHCIG+ H HV+YMDALD C+CI+YK
Sbjct: 1  MQTHCIGYPHSHVAYMDALDQCVCIKYK 28

The following BLAST results are available for this feature:

BLAST of Lag0035282 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98643.1	6.0e-04	75.00	hypothetical protein E5676_scaffold507G00280 [Cucumis melo var. makuwa]	[more]
KAA0047449.1	6.0e-04	75.00	hypothetical protein E6C27_scaffold498G00520 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0035282 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0035282.1	Lag0035282.1	mRNA