Lag0035278 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0035278
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr3: 17928155 .. 17928870 (+)
RNA-Seq ExpressionLag0035278
SyntenyLag0035278
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGCCGAAGTGCCCCATAAGTTCAAGATACCCATGTTCAAACCATATGATGGCAAGAAGAACCCCATACAGCACATAGACGCCTACAGGAACTGTATGGACTTCCACGGCGTCTCAGATGCGATCAGGTGTCACGCCTTCTCTTTTACTGTGACACGATCAGCCAAACAATGGTTTCAAAGGTTGAAGAGGAAATTCATCAACTCTTTCAAGGAATTAGCCGAGCATTCCTCTCGTAGTTCATGGGAGCCAGAGAACAGCACAAGCCTCACATCAACCTCTTAACTGTCAAATAACAGTCAGGTGAGAGCTTGTGTGATTATATAATACGTTTTAACGAGGAAGCACTGCAGGTTGAGGGATAAAGTGAGGGGGTAGCCTTAGTAGCCATCACAGTCGGACTGGAGGATGAGTGGTTACTGAATTCAATATGTAAAAGCCAACCTCGCACTTACACTGAGTTTGTCTCCAGAGCACAGAAGTACATGAGTGCAGAGGAGCTGCTTAGATCGAAGAAGGTAGAACACAAGAGGTATTCTTCATTCTACCGAGACCAGAGGAAGGACAAAAGTCAGCGGAATCGTCCAAGTAAAAAATACTCCACTTTTGGGGAAGAGATCATTTCTCATTTCCATCCTTGGGAGCCAAATAGAGGAGGAAAGATTGGAGACTTCAAGAAGACCATCAATTACGGATTTGACCAAGGGAATTAG

mRNA sequence

ATGAAAGCCGAAGTGCCCCATAAGTTCAAGATACCCATGTTCAAACCATATGATGGCAAGAAGAACCCCATACAGCACATAGACGCCTACAGGAACTGTATGGACTTCCACGGCGTCTCAGATGCGATCAGGTGTCACGCCTTCTCTTTTACTGTGACACGATCAGCCAAACAATGGTTTCAAAGAGCACAGAAGTACATGAGTGCAGAGGAGCTGCTTAGATCGAAGAAGGTAGAACACAAGAGGTATTCTTCATTCTACCGAGACCAGAGGAAGGACAAAAGTCAGCGGAATCGTCCAAGTAAAAAATACTCCACTTTTGGGGAAGAGATCATTTCTCATTTCCATCCTTGGGAGCCAAATAGAGGAGGAAAGATTGGAGACTTCAAGAAGACCATCAATTACGGATTTGACCAAGGGAATTAG

Coding sequence (CDS)

ATGAAAGCCGAAGTGCCCCATAAGTTCAAGATACCCATGTTCAAACCATATGATGGCAAGAAGAACCCCATACAGCACATAGACGCCTACAGGAACTGTATGGACTTCCACGGCGTCTCAGATGCGATCAGGTGTCACGCCTTCTCTTTTACTGTGACACGATCAGCCAAACAATGGTTTCAAAGAGCACAGAAGTACATGAGTGCAGAGGAGCTGCTTAGATCGAAGAAGGTAGAACACAAGAGGTATTCTTCATTCTACCGAGACCAGAGGAAGGACAAAAGTCAGCGGAATCGTCCAAGTAAAAAATACTCCACTTTTGGGGAAGAGATCATTTCTCATTTCCATCCTTGGGAGCCAAATAGAGGAGGAAAGATTGGAGACTTCAAGAAGACCATCAATTACGGATTTGACCAAGGGAATTAG

Protein sequence

MKAEVPHKFKIPMFKPYDGKKNPIQHIDAYRNCMDFHGVSDAIRCHAFSFTVTRSAKQWFQRAQKYMSAEELLRSKKVEHKRYSSFYRDQRKDKSQRNRPSKKYSTFGEEIISHFHPWEPNRGGKIGDFKKTINYGFDQGN
Homology
BLAST of Lag0035278 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-11
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 0

Query: 1   MKAEVPHKFKIPMFKPYDGKKNPIQHIDAYRNCMDFHGVSDAIRCHAFSFTVTRSAKQWF 60
           M+ +VP KFK+P  KP+DG   P+ H+DAYR  MD +GVSDAIRC  FS T+  SA+ WF
Sbjct: 90  MREKVPPKFKLPTVKPFDGMTEPVDHLDAYREWMDIYGVSDAIRCRVFSTTLNGSARIWF 149

Query: 61  QRAQK 66
           ++ ++
Sbjct: 150 RQLKR 154

BLAST of Lag0035278 vs. NCBI nr
Match: XP_022147761.1 (uncharacterized protein LOC111016619 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 8.4e-11
Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 0

Query: 1  MKAEVPHKFKIPMFKPYDGKKNPIQHIDAYRNCMDFHGVSDAIRCHAFSFTVTRSAKQWF 60
          MK +VP KFK+P  K YDG  +PI H+D Y    D +G+++AIRC  FSFT+T S + WF
Sbjct: 1  MKEKVPPKFKLPAIKKYDGSTDPIDHLDVYHEWTDIYGITEAIRCRVFSFTLTGSTRIWF 60

Query: 61 QRAQK--YMSAEELLRS 76
          Q+ ++    S +EL R+
Sbjct: 61 QQLKRKSISSFKELARA 77

BLAST of Lag0035278 vs. NCBI nr
Match: XP_024047974.1 (uncharacterized protein LOC112101548 [Citrus clementina] >XP_024953918.1 uncharacterized protein LOC112498174 [Citrus sinensis])

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-09
Identity = 33/76 (43.42%), Postives = 51/76 (67.11%), Query Frame = 0

Query: 1  MKAEVPHKFKIPMFKPYDGKKNPIQHIDAYRNCMDFHGVSDAIRCHAFSFTVTRSAKQWF 60
          M+A  P  F++P  +PYDG+K P++H++ YR+ M+  GVS AI C AF  T++R+A++WF
Sbjct: 24 MRARYPSGFRLPSIEPYDGQKYPMEHVELYRSLMEVQGVSSAILCRAFPLTLSRAARRWF 83

Query: 61 Q--RAQKYMSAEELLR 75
          +  R     S  EL+R
Sbjct: 84 RMLRPNSISSFNELIR 99

BLAST of Lag0035278 vs. NCBI nr
Match: XP_022150613.1 (uncharacterized protein LOC111018708, partial [Momordica charantia])

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-09
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 0

Query: 1   MKAEVPHKFKIPMFKPYDGKKNPIQHIDAYRNCMDFHGVSDAIRCHAFSFTVTRSAKQWF 60
           ++A +P KFK P  KPYDG K+P  +++ +   MDFH  SDAI+C AF   +T SA+ W+
Sbjct: 63  LEAPIPPKFKAPTVKPYDGSKDPKDYVEVFEGLMDFHAASDAIKCRAFQIALTGSARLWY 122

Query: 61  QR 63
           +R
Sbjct: 123 RR 124

BLAST of Lag0035278 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 2.1e-09
Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 0

Query: 1   MKAEVPHKFKIPMFKPYDGKKNPIQHIDAYRNCMDFHGVSDAIRCHAFSFTVTRSAKQWF 60
           M+ +VP KFK+P  K +D   +P+ H+DAYR  MD +GVS+A+RC  FS T+  SA+ WF
Sbjct: 185 MREKVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWF 244

Query: 61  QRAQK 66
           ++ ++
Sbjct: 245 RQLKR 249

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022159109.11.3e-1152.31uncharacterized protein LOC111025548 [Momordica charantia][more]
XP_022147761.18.4e-1146.75uncharacterized protein LOC111016619 [Momordica charantia][more]
XP_024047974.11.2e-0943.42uncharacterized protein LOC112101548 [Citrus clementina] >XP_024953918.1 unchara... [more]
XP_022150613.11.6e-0946.77uncharacterized protein LOC111018708, partial [Momordica charantia][more]
XP_022158830.12.1e-0946.15uncharacterized protein LOC111025293 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0035278.1Lag0035278.1mRNA