Lag0035276 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0035276
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	(1->3)-beta-glucan endohydrolase
Location	chr3: 17917768 .. 17919798 (+)
RNA-Seq Expression	Lag0035276
Synteny	Lag0035276

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGGACCCAATCAAGCTAGGCCAGAAAGAGAAGTGAAGACCTTTGAGTCCAAAAGGTGTTTGGGCTTCCAGGAGTCGTTCCCTTTGGCCTGTGGGAGCTTTAATCACCGGGCTTGGGTCCGCAGACGAACGATACAGGTAAAGAAAACCCTAGCTTTGGGAAAGGTAAAAAAAACCTCTCCTAATCTTGAAAAGGGGATCAATCAACCAGTTTTACTAGCTCTCTTACTTCGTCACTCTATTGATTCTTCATTGTTTAATTTGCAACATTCTCTCTGATAACTGACTTAAGCATCGGAGTGTGTGTAGCAAGCACCACACCAGTGTGCAATGTTTGCTCCATATTTGTAGGTCACGTCTTCCTCGTCTTCTACAAATTCACTGTTGGTGTCACGTGAAGGTTAGATGAGTTGCATGGCCGGATTTTGTCATCAACATTATACATTATTTCCAACTCGATCTCAACTATTTCTTAAGTCGATATTTTTGTCGGAGTATAAAAATATCAACAATACATTAAAAACGGTAGTCCATACTTCATAACATGAAAAATAATAAATATACATACTTCAAAAAATTGAACTAATTATTTTTTATATATATTTGGAAAATAGAAATGGAAAATAGAATTATATGGAGTGAAAGGATCCTTATATTATATTATAAAGTTAAGTGCTTTTTTTTTTTTTTTATTAACTAAGTTAAGTGTTTTAATTTCTCTCAAGTTAATCGGTCCAAATTAATTTTAAGGAAACTTATAAGCTAACTTAAGAGTTTAAATTATTTGAATCTAATCTACCCTAATAAAAAATTATAACCTATTTCAAAATTTAGACAAATCGAGTTGAATCGTGTCAAATCCGTCCTCTTTTCTTCTAACCATATATTTATTGACAAGTTGGAAAAATGTTTCCAACCACTCATTGATAAGAATTTAGCAATTGGGATTTTTCTATGTCCACTCAAAAGGGTCAGTGTGGGGTGTGTTTAATTTCTTTCTATTGACTTATCCCAAGTCTTCAACAAGAGGGAGTCATGAACCAAAAGAGAATGCAAAGTTTCATTATAAAAGGAGAAAAACATAAAAGCATTAATATGAGCATATATAGAACACAACATTTTTTTCTTTTAAACCTATATTTTCCTTTGTGTTATTATTGCTCTATCCATGGCCAACTTGTTCTCCAATGCCAAAGCCCTTTCTTCTTTCTTCTTATCACTTCTTTGGTTGCTTTTTGCAAACATACAGCTAACAAGTTAGTCTCTCTCTCACACATGAATGTTTCTACTTTATGCAATACACCTACATTATATTATGCATATAACAATCTACATCCCATTTCATTCATATTTTCAGGTTTAATATTTTCTACTTTTCTTTTCTTTTGATGTATTTTTTTAGTTCAACAACATTTGAGTGTGGAGGGATTTAAACCTCTAACCTGTTAGTCATAGTACATGTCAATTATCACTAAGCTATGTTCATTCTGACATTTTTTTTTAGCAATATTTTGTCTAAATCTAGAGTGCAATTCGATGAAATTGCAAGTTGAGGGTAAAATTAAAATTGATACCCGTTATTAAATTGAGGGTAAAAATTGGTTTCTTAAAGCTAATTGAGAAACATAGCATTAATGTGTGTGCATATGATTAATTAAGCATAAATTAAGGTTTATCCAATTTGACTCAGGTGCTAATCTGCCATTATTCCAACCAGAAGTTGCCAACCTTAATTATAATCAGAGCAACATTGGAAGAACAATAATGCAACTTTACAATCCGACCACACAGTTTGTTGTGGACAATAGCTTGCCATTGCTGGTCAACTTGTACCCTTACTTGAGTTATATCAACAAACCTAGTACGGCTCTCAGCTATGCACTTTTACAAGGACGTCGGCTGTTGCTGATGGCAAATTTGTTCATCAAAATTTGTTCCATGTCGTTTTGGACATGTGTTGTTTTGTTCTGTGTTGGACAAGTCCAATGCCGGAGGTTTTGGAGACTTTTGTATCCTACGGTGGTTGGCTGA

mRNA sequence

TTTGGACCCAATCAAGCTAGGCCAGAAAGAGAAGTGAAGACCTTTGAGTCCAAAAGGTGTTTGGGCTTCCAGGAGTCGTTCCCTTTGGCCTGTGGGAGCTTTAATCACCGGGCTTGGGTCCGCAGACGAACGATACAGGTCACGTCTTCCTCGTCTTCTACAAATTCACTGTTGGTGTCACGTGAAGGTGCTAATCTGCCATTATTCCAACCAGAAGTTGCCAACCTTAATTATAATCAGAGCAACATTGGAAGAACAATAATGCAACTTTACAATCCGACCACACAGTTTGTTGTGGACAATAGCTTGCCATTGCTGGTCAACTTGTACCCTTACTTGAGTTATATCAACAAACCTAGTACGGCTCTCAGCTATGCACTTTTACAAGGACGTCGGCTGTTGCTGATGGCAAATTTGTTCATCAAAATTTGTTCCATGTCGTTTTGGACATGTGTTGTTTTGTTCTGTGTTGGACAAGTCCAATGCCGGAGGTTTTGGAGACTTTTGTATCCTACGGTGGTTGGCTGA

Coding sequence (CDS)

TTTGGACCCAATCAAGCTAGGCCAGAAAGAGAAGTGAAGACCTTTGAGTCCAAAAGGTGTTTGGGCTTCCAGGAGTCGTTCCCTTTGGCCTGTGGGAGCTTTAATCACCGGGCTTGGGTCCGCAGACGAACGATACAGGTCACGTCTTCCTCGTCTTCTACAAATTCACTGTTGGTGTCACGTGAAGGTGCTAATCTGCCATTATTCCAACCAGAAGTTGCCAACCTTAATTATAATCAGAGCAACATTGGAAGAACAATAATGCAACTTTACAATCCGACCACACAGTTTGTTGTGGACAATAGCTTGCCATTGCTGGTCAACTTGTACCCTTACTTGAGTTATATCAACAAACCTAGTACGGCTCTCAGCTATGCACTTTTACAAGGACGTCGGCTGTTGCTGATGGCAAATTTGTTCATCAAAATTTGTTCCATGTCGTTTTGGACATGTGTTGTTTTGTTCTGTGTTGGACAAGTCCAATGCCGGAGGTTTTGGAGACTTTTGTATCCTACGGTGGTTGGCTGA

Protein sequence

FGPNQARPEREVKTFESKRCLGFQESFPLACGSFNHRAWVRRRTIQVTSSSSSTNSLLVSREGANLPLFQPEVANLNYNQSNIGRTIMQLYNPTTQFVVDNSLPLLVNLYPYLSYINKPSTALSYALLQGRRLLLMANLFIKICSMSFWTCVVLFCVGQVQCRRFWRLLYPTVVG

Homology

[Close]

BLAST of Lag0035276 vs. NCBI nr
Match: XP_038895085.1 (glucan endo-1,3-beta-glucosidase, basic isoform-like [Benincasa hispida])

HSP 1 Score: 56.2 bits (134), Expect = 3.2e-04
Identity = 25/56 (44.64%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 79  NQSNIGRTIMQLYNPTTQFVVDNSLPLLVNLYPYLSYINKPSTALSYALLQGRRLL 135
           +Q +     + + NPT +F++DNS PLLVNLYPY SY+  P   L YA+  G  L+
Sbjct: 176 SQGSFDTNYLPILNPTFRFLLDNSSPLLVNLYPYFSYVTTPRMGLDYAIFTGTSLI 231

[Close]

BLAST of Lag0035276 vs. NCBI nr
Match: XP_008459107.1 (PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Cucumis melo])

HSP 1 Score: 55.1 bits (131), Expect = 7.2e-04
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 88  MQLYNPTTQFVVDNSLPLLVNLYPYLSYINKPSTALSYALLQGRRLLL 136
           + + NPT +F++DN+ PLLVNLYPY SY+  PS  L YA+  G  L++
Sbjct: 186 LPILNPTIRFLLDNNSPLLVNLYPYFSYVGTPSMELDYAIFTGTSLVV 233

[Close]

BLAST of Lag0035276 vs. NCBI nr
Match: KAA0043333.1 (glucan endo-1,3-beta-glucosidase, basic isoform-like [Cucumis melo var. makuwa] >TYK02663.1 glucan endo-1,3-beta-glucosidase, basic isoform-like [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 7.2e-04
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 88  MQLYNPTTQFVVDNSLPLLVNLYPYLSYINKPSTALSYALLQGRRLLL 136
           + + NPT +F++DN+ PLLVNLYPY SY+  PS  L YA+  G  L++
Sbjct: 123 LPILNPTIRFLLDNNSPLLVNLYPYFSYVGTPSMELDYAIFTGTSLVV 170

The following BLAST results are available for this feature:

BLAST of Lag0035276 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895085.1	3.2e-04	44.64	glucan endo-1,3-beta-glucosidase, basic isoform-like [Benincasa hispida]	[more]
XP_008459107.1	7.2e-04	50.00	PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Cucumis melo]	[more]
KAA0043333.1	7.2e-04	50.00	glucan endo-1,3-beta-glucosidase, basic isoform-like [Cucumis melo var. makuwa] ...	[more]

BLAST of Lag0035276 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.20.20.80	Glycosidases	coord: 68..145 e-value: 3.9E-6 score: 28.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0035276.1	Lag0035276.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016798	hydrolase activity, acting on glycosyl bonds