Lag0035221 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0035221
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCRIB domain-containing protein
Locationchr3: 16896199 .. 16897818 (-)
RNA-Seq ExpressionLag0035221
SyntenyLag0035221
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGATTGGTTCTTCTTCCTTTCTCTGTGGGATGCATCTCTGAATCAAGTGTTGCTGTGGGAATTCAACATAATTCAAGATCCAAACCACCTCAGCCAATCTCTTCTCCTAGATCAAGTCTTTTCTCTTTCCTCTCTCTCTCTTTTTTTTTTTTGATCTTACGGGCACGGGCGGAGTCAGGAATTTTCTTAGAGAGTGATAAAGTTTTGGAGTCGGTTTCGTATCTTATCCAGATTCAATTTCCCATATGGATTTATTGGGGTTTTTTTTTTTTTGTTGGGTAGGATTAGTTTTTGTGAAATGGTAATTAGATTGTGTTTGGATCGTGTGACGACCCATCAAGTGGAAATTTTGAAATCATTGTTGGTCTGTTTTTAGTAAGTTTAGGTTCTAAATTTTCTACCAAACAAATATAATAATAGAGCATGAAATACAACTCTTTGTTTCATTGTCTTATAATTTTATTCTTAAAATCTTATGTTTTTTTGTTTGTTTGTTAAGAAGGTGAGAAAGATGAAGATGGGGAAGAAGTTGCTGATGAAACACTATTAGAAGAGAGCTTGAAGAACTCACAGAGGTTCACAGCACTTGCAAAGCCTAATATAGGAGTTGGCTTTCATAGGCTTTACAAAGGTTTCAAGAACTTCTCTCAATTATTTGGTGAGTTGTGTTTTTCCTTTTTCCTTATTTTATTATTATTTTTTAAAAAATAATGATTTTTTTCTAATATATTGGAATACTTTTTCCTAACTTGGTTTAGTTCTAAAAAATTTCAAATGAAAAAAAAAAAAATTGTTTGAGACTTAAACTTCTTTAAATAAAATATTCAAAATTTTCATGTCATTTTCAAATTTTACTCTCAAAATCTTTCTTCATATCCTAATCTAATTTAATTTCAAAACCGATGGTGAAATCCTAATTAAAATTTAAATATTTTGGGGAAAAAGGGGGGGGGGGGTGATTTTCAAAATTTTTTTATTTTTTATTTAAAATTATTTGGACTAAATTTTAAAAGTGTTTTTAAAGTATTGTAAACCAAAATAAAGGAAACATTGAGGGAAAAAATTACTGTTTTCAAAATTGGACTACAATTTTTTAATGTAAAAAAAAAAAAAACAAACAAAAACTAAACAAAAAGGTTGCTAATTAGTAAACCAGCCATATTTTTCTTTTTAAAAAACATTACCAAATTACACCTTAATCTTTAAAATTTGGCTAAAATTTTAGAAAACAAAGAAATATACTAAAATAACATATCAAATCATTTCCACCCTAATAAAGAAAAACTTGATATATATTAAATCAAAACCCTAATCATTTTTTTTTCCTTTTGGGTAATATGATATTATTTTGAAAAAGTGTACAAAGAGGAGATGGAAGAAATGGAAATGGAAATGGAAATAGGATCTCCCAAAGATGTGAAGCATGTGACACACATTGGCTGTGATGCCACCACAAGATCAGATGATAATAATGCCAATCCTTTCATTGATTGGGAAACTCTTCTTGCTTCTGACCTTCTCTCTGTTCCCTCCTCCACTTCTTGGAGCCAATTTGAACATCAACTTTCAAACCCCACACATCATTTACCTAATATTGTACATCATTCCATTTGA

mRNA sequence

ATGGAGAGATTGGTTCTTCTTCCTTTCTCTGTGGGATGCATCTCTGAATCAAGTGTTGCTGTGGGAATTCAACATAATTCAAGATCCAAACCACCTCAGCCAATCTCTTCTCCTAGATCAAAAGGTGAGAAAGATGAAGATGGGGAAGAAGTTGCTGATGAAACACTATTAGAAGAGAGCTTGAAGAACTCACAGAGGTTCACAGCACTTGCAAAGCCTAATATAGGAGTTGGCTTTCATAGGCTTTACAAAGGTTTCAAGAACTTCTCTCAATTATTTGTGTACAAAGAGGAGATGGAAGAAATGGAAATGGAAATGGAAATAGGATCTCCCAAAGATGTGAAGCATGTGACACACATTGGCTGTGATGCCACCACAAGATCAGATGATAATAATGCCAATCCTTTCATTGATTGGGAAACTCTTCTTGCTTCTGACCTTCTCTCTGTTCCCTCCTCCACTTCTTGGAGCCAATTTGAACATCAACTTTCAAACCCCACACATCATTTACCTAATATTGTACATCATTCCATTTGA

Coding sequence (CDS)

ATGGAGAGATTGGTTCTTCTTCCTTTCTCTGTGGGATGCATCTCTGAATCAAGTGTTGCTGTGGGAATTCAACATAATTCAAGATCCAAACCACCTCAGCCAATCTCTTCTCCTAGATCAAAAGGTGAGAAAGATGAAGATGGGGAAGAAGTTGCTGATGAAACACTATTAGAAGAGAGCTTGAAGAACTCACAGAGGTTCACAGCACTTGCAAAGCCTAATATAGGAGTTGGCTTTCATAGGCTTTACAAAGGTTTCAAGAACTTCTCTCAATTATTTGTGTACAAAGAGGAGATGGAAGAAATGGAAATGGAAATGGAAATAGGATCTCCCAAAGATGTGAAGCATGTGACACACATTGGCTGTGATGCCACCACAAGATCAGATGATAATAATGCCAATCCTTTCATTGATTGGGAAACTCTTCTTGCTTCTGACCTTCTCTCTGTTCCCTCCTCCACTTCTTGGAGCCAATTTGAACATCAACTTTCAAACCCCACACATCATTTACCTAATATTGTACATCATTCCATTTGA

Protein sequence

MERLVLLPFSVGCISESSVAVGIQHNSRSKPPQPISSPRSKGEKDEDGEEVADETLLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNFSQLFVYKEEMEEMEMEMEIGSPKDVKHVTHIGCDATTRSDDNNANPFIDWETLLASDLLSVPSSTSWSQFEHQLSNPTHHLPNIVHHSI
Homology
BLAST of Lag0035221 vs. NCBI nr
Match: XP_011660226.1 (CRIB domain-containing protein RIC4 isoform X3 [Cucumis sativus])

HSP 1 Score: 261.9 bits (668), Expect = 3.9e-66
Identity = 143/179 (79.89%), Postives = 150/179 (83.80%), Query Frame = 0

Query: 1   MERLVLLPFSVGCISESSVAVGIQHNSRSKPPQPISSPRSKGEKDEDG-EEVADETLLEE 60
           MERLVLLPFSVGCISE+SVAVGIQHNS +  P PISSP SKGEKDEDG EE+  E+LLEE
Sbjct: 5   MERLVLLPFSVGCISETSVAVGIQHNSTTSKPHPISSPTSKGEKDEDGKEEIGCESLLEE 64

Query: 61  SLKNSQRFTALAKPNIGVGFHRLYKGFKNFSQLFVYKEEMEEMEMEMEIGSPKDVKHVTH 120
           SLKNSQRFTALAKPNIGVGFHRLYKGFKN SQLFVYKEEMEEMEMEMEIGSP DVKHVTH
Sbjct: 65  SLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMEMEIGSPTDVKHVTH 124

Query: 121 IGCDATTRSDDNNANPFIDWETLLASDLLSVPSSTSWSQFEHQLSNPTHHLPNIVHHSI 179
           IGCDATTR D   AN FI WETLLA        S+SW QF+ QLSNP  HLPNI+ HSI
Sbjct: 125 IGCDATTRED--AANSFIAWETLLA--------SSSWRQFDDQLSNP-KHLPNILGHSI 172

BLAST of Lag0035221 vs. NCBI nr
Match: XP_008443702.1 (PREDICTED: CRIB domain-containing protein RIC4 isoform X1 [Cucumis melo] >XP_008443703.1 PREDICTED: CRIB domain-containing protein RIC4 isoform X1 [Cucumis melo] >XP_008443705.1 PREDICTED: CRIB domain-containing protein RIC4 isoform X1 [Cucumis melo] >XP_008443706.1 PREDICTED: CRIB domain-containing protein RIC4 isoform X1 [Cucumis melo] >XP_008443707.1 PREDICTED: CRIB domain-containing protein RIC4 isoform X1 [Cucumis melo] >XP_008443708.1 PREDICTED: CRIB domain-containing protein RIC4 isoform X1 [Cucumis melo])

HSP 1 Score: 259.6 bits (662), Expect = 2.0e-65
Identity = 142/179 (79.33%), Postives = 149/179 (83.24%), Query Frame = 0

Query: 1   MERLVLLPFSVGCISESSVAVGIQHNSRSKPPQPISSPRSKGEKDEDG-EEVADETLLEE 60
           MERLVLLPFSVGCISE+SVAVGIQHNS +  P PISSP SKGEKDEDG EE+  E  LEE
Sbjct: 5   MERLVLLPFSVGCISETSVAVGIQHNSTTSKPHPISSPTSKGEKDEDGKEEIGCERSLEE 64

Query: 61  SLKNSQRFTALAKPNIGVGFHRLYKGFKNFSQLFVYKEEMEEMEMEMEIGSPKDVKHVTH 120
           SLKNSQRFTALAKPNIGVGFHRLYKGFKN SQLFVYKEEMEEMEMEMEIGSP DVKHVTH
Sbjct: 65  SLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMEMEIGSPTDVKHVTH 124

Query: 121 IGCDATTRSDDNNANPFIDWETLLASDLLSVPSSTSWSQFEHQLSNPTHHLPNIVHHSI 179
           IGCDAT RS+D  AN FI WETLLA        S+SW QF+ QLSNP  HLPNI+ HSI
Sbjct: 125 IGCDATARSED-AANSFIAWETLLA--------SSSWRQFDDQLSNP-KHLPNILGHSI 173

BLAST of Lag0035221 vs. NCBI nr
Match: XP_038880090.1 (CRIB domain-containing protein RIC4-like isoform X1 [Benincasa hispida])

HSP 1 Score: 259.2 bits (661), Expect = 2.6e-65
Identity = 144/180 (80.00%), Postives = 150/180 (83.33%), Query Frame = 0

Query: 1   MERLVLLPFSVGCISESSVAVGIQHNSRS-KPPQPISSPRSKGEKDEDG-EEVADETLLE 60
           MERLVLLPFSVGCISESSVAVGIQHN+ S   P PISSP SKGEKDEDG EEV  ETLLE
Sbjct: 5   MERLVLLPFSVGCISESSVAVGIQHNNASTSKPHPISSPTSKGEKDEDGKEEVGGETLLE 64

Query: 61  ESLKNSQRFTALAKPNIGVGFHRLYKGFKNFSQLFVYKEEMEEMEMEMEIGSPKDVKHVT 120
           ESLKNSQRFTALAKPNIGVGFHRLYKGFKN SQLFVYK+EMEEMEM+MEIGSP DVKHVT
Sbjct: 65  ESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKDEMEEMEMDMEIGSPTDVKHVT 124

Query: 121 HIGCDATTRSDDNNANPFIDWETLLASDLLSVPSSTSWSQFEHQLSNPTHHLPNIVHHSI 179
           HIGCDATTR D   AN FI WETLLA        S+SW QF+ QLSNP  HLPNI+ HSI
Sbjct: 125 HIGCDATTRDD---ANSFIAWETLLA--------SSSWRQFDDQLSNP-KHLPNILGHSI 172

BLAST of Lag0035221 vs. NCBI nr
Match: XP_004139106.1 (CRIB domain-containing protein RIC4 isoform X4 [Cucumis sativus])

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-63
Identity = 141/179 (78.77%), Postives = 148/179 (82.68%), Query Frame = 0

Query: 1   MERLVLLPFSVGCISESSVAVGIQHNSRSKPPQPISSPRSKGEKDEDG-EEVADETLLEE 60
           MERLVLLPFSVGCISE+SVAVGIQHNS +  P PISSP S  EKDEDG EE+  E+LLEE
Sbjct: 5   MERLVLLPFSVGCISETSVAVGIQHNSTTSKPHPISSPTS-SEKDEDGKEEIGCESLLEE 64

Query: 61  SLKNSQRFTALAKPNIGVGFHRLYKGFKNFSQLFVYKEEMEEMEMEMEIGSPKDVKHVTH 120
           SLKNSQRFTALAKPNIGVGFHRLYKGFKN SQLFVYKEEMEEMEMEMEIGSP DVKHVTH
Sbjct: 65  SLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMEMEIGSPTDVKHVTH 124

Query: 121 IGCDATTRSDDNNANPFIDWETLLASDLLSVPSSTSWSQFEHQLSNPTHHLPNIVHHSI 179
           IGCDATTR D   AN FI WETLLA        S+SW QF+ QLSNP  HLPNI+ HSI
Sbjct: 125 IGCDATTRED--AANSFIAWETLLA--------SSSWRQFDDQLSNP-KHLPNILGHSI 171

BLAST of Lag0035221 vs. NCBI nr
Match: XP_038880092.1 (CRIB domain-containing protein RIC4-like isoform X2 [Benincasa hispida])

HSP 1 Score: 250.8 bits (639), Expect = 9.1e-63
Identity = 142/180 (78.89%), Postives = 148/180 (82.22%), Query Frame = 0

Query: 1   MERLVLLPFSVGCISESSVAVGIQHNSRS-KPPQPISSPRSKGEKDEDG-EEVADETLLE 60
           MERLVLLPFSVGCISESSVAVGIQHN+ S   P PISSP S  EKDEDG EEV  ETLLE
Sbjct: 5   MERLVLLPFSVGCISESSVAVGIQHNNASTSKPHPISSPTS-SEKDEDGKEEVGGETLLE 64

Query: 61  ESLKNSQRFTALAKPNIGVGFHRLYKGFKNFSQLFVYKEEMEEMEMEMEIGSPKDVKHVT 120
           ESLKNSQRFTALAKPNIGVGFHRLYKGFKN SQLFVYK+EMEEMEM+MEIGSP DVKHVT
Sbjct: 65  ESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKDEMEEMEMDMEIGSPTDVKHVT 124

Query: 121 HIGCDATTRSDDNNANPFIDWETLLASDLLSVPSSTSWSQFEHQLSNPTHHLPNIVHHSI 179
           HIGCDATTR D   AN FI WETLLA        S+SW QF+ QLSNP  HLPNI+ HSI
Sbjct: 125 HIGCDATTRDD---ANSFIAWETLLA--------SSSWRQFDDQLSNP-KHLPNILGHSI 171

BLAST of Lag0035221 vs. ExPASy Swiss-Prot
Match: Q9FFD5 (CRIB domain-containing protein RIC4 OS=Arabidopsis thaliana OX=3702 GN=RIC4 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-19
Identity = 65/155 (41.94%), Postives = 89/155 (57.42%), Query Frame = 0

Query: 1   MERLVLLPFSVGCISESSVAVGIQHNSRSKPPQPISSPRSKGEKDEDGEEVADETLLEES 60
           MERLV+LPFS+GCIS SSVAV            P+S P           +V  E   E++
Sbjct: 5   MERLVVLPFSIGCISVSSVAV----------LSPLSKPH-----HHHSRQVIREQEEEDN 64

Query: 61  LKNSQRFTALAKPNIGVGFHRLYKGFKNFSQLFVYK-EEMEEMEME-MEIGSPKDVKHVT 120
           +KN  +F A++KP I +G +R++K FK  SQLF  K EE EE+E   MEIG P +VKHV+
Sbjct: 65  MKNVFKFLAVSKPEISIGINRIFKSFKTISQLFADKDEEKEEVETSGMEIGVPTNVKHVS 124

Query: 121 HIGCDATTRSDDNNANPFIDWETLLASDLLSVPSS 154
           HIG ++   +      P   WE L+  +LL+  +S
Sbjct: 125 HIGWESGLTA---ATGPGKGWEDLIPPELLAAAAS 141

BLAST of Lag0035221 vs. ExPASy Swiss-Prot
Match: Q8GYU0 (CRIB domain-containing protein RIC2 OS=Arabidopsis thaliana OX=3702 GN=RIC2 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-09
Identity = 38/95 (40.00%), Postives = 53/95 (55.79%), Query Frame = 0

Query: 43  EKDEDGEEVADETLLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNFSQLFV-YKEEMEE 102
           E D  G    D T +E +   +         NI  G +R+ + FK+FS  F+ Y+EE +E
Sbjct: 14  ESDAKGSFRKDYTKMENNNNGA---------NISDGIYRIIRSFKSFSHFFIRYEEETKE 73

Query: 103 MEMEMEIGSPKDVKHVTHIGCDATTRSDDNNANPF 137
            E EMEIG P DVKH++HIG D T  + DN ++ F
Sbjct: 74  REAEMEIGFPTDVKHLSHIGVDGTMTTFDNTSSSF 99

BLAST of Lag0035221 vs. ExPASy Swiss-Prot
Match: Q9M0Y9 (CRIB domain-containing protein RIC10 OS=Arabidopsis thaliana OX=3702 GN=RIC10 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.4e-04
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 0

Query: 82  LYKGFKNFSQLFVYKEEMEEMEMEMEIGSPKDVKHVTHIGCDATTRS 129
           +YKGFK  SQ+F  ++E +    E+EIG P DVKHV HIG + ++ S
Sbjct: 8   IYKGFKCISQIFAVEKERD----EIEIGFPTDVKHVAHIGWEGSSGS 50

BLAST of Lag0035221 vs. ExPASy Swiss-Prot
Match: F4IVV0 (CRIB domain-containing protein RIC1 OS=Arabidopsis thaliana OX=3702 GN=RIC1 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.6e-04
Identity = 25/55 (45.45%), Postives = 31/55 (56.36%), Query Frame = 0

Query: 82  LYKGFKNFSQLFVYKEEMEEMEMEMEIGSPKDVKHVTHIGCDATTRSDDNNANPF 137
           L KG +  +Q+F      EE E EM+IG P DVKHV HIG D  T +  +  N F
Sbjct: 8   LLKGLRYITQIF-----DEEKEQEMQIGFPTDVKHVAHIGSDGPTNTTPSWMNDF 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011660226.13.9e-6679.89CRIB domain-containing protein RIC4 isoform X3 [Cucumis sativus][more]
XP_008443702.12.0e-6579.33PREDICTED: CRIB domain-containing protein RIC4 isoform X1 [Cucumis melo] >XP_008... [more]
XP_038880090.12.6e-6580.00CRIB domain-containing protein RIC4-like isoform X1 [Benincasa hispida][more]
XP_004139106.11.4e-6378.77CRIB domain-containing protein RIC4 isoform X4 [Cucumis sativus][more]
XP_038880092.19.1e-6378.89CRIB domain-containing protein RIC4-like isoform X2 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Q9FFD51.3e-1941.94CRIB domain-containing protein RIC4 OS=Arabidopsis thaliana OX=3702 GN=RIC4 PE=1... [more]
Q8GYU02.1e-0940.00CRIB domain-containing protein RIC2 OS=Arabidopsis thaliana OX=3702 GN=RIC2 PE=1... [more]
Q9M0Y93.4e-0448.94CRIB domain-containing protein RIC10 OS=Arabidopsis thaliana OX=3702 GN=RIC10 PE... [more]
F4IVV07.6e-0445.45CRIB domain-containing protein RIC1 OS=Arabidopsis thaliana OX=3702 GN=RIC1 PE=1... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000095CRIB domainPFAMPF00786PBDcoord: 107..132
e-value: 4.1E-5
score: 23.9
IPR000095CRIB domainPROSITEPS50108CRIBcoord: 108..121
score: 8.430938
IPR036936CRIB domain superfamilyGENE3D3.90.810.10CRIB domaincoord: 104..149
e-value: 5.1E-5
score: 25.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..53
NoneNo IPR availablePANTHERPTHR46931:SF6CRIB DOMAIN-CONTAINING PROTEIN RIC4coord: 1..174
IPR044509CRIB domain-containing protein RIC2/4PANTHERPTHR46931CRIB DOMAIN-CONTAINING PROTEIN RIC2coord: 1..174

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0035221.1Lag0035221.1mRNA