Lag0035196 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0035196
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Basic leucine zipper/W2 domain protein
Location	chr3: 16423016 .. 16425245 (-)
RNA-Seq Expression	Lag0035196
Synteny	Lag0035196

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGAGAGAAGAGCCCTGGCTTAAAGATCCTCTGGGTTTGGACTATTGGCACCGCCGCCATTCTTGTTACAAGCGTTGCTCGGATGAGAATGAGGGATATGGAGAACGTTTTCAACTCCGATCAACAACAATCGCTGCAGCAGCAACAAACCTCTTCCACCGATTCGTTTCCCGTCGCCGAAGGAGACTCATCACAGGTTTAGAAGCAATTACGCCTTTGTAATTTAGCTCAAACTGGTAATTTTCTTTTCAAGTTTATAATTAGGGATCTGGGTGTTCGTCAAATCCCATTTTCGGTGGAGTGTATATAATCTGTTTGATGAAATTCCTGAATGGAAGGAACTGTCACATTTTCACTCTGTAATGAACTTCCAATTGCTTTGAATATTTGATGTATCGATTTCAATGAAGTATTTTATGTTTGCTGACACATTTGGTGCATAGACTACCAAGTCTGCCTCTTTGTTGAATTTGGTGTGATGAATGAAGCTTTGTACAATAAGTGTTTATTGAAATTTCTGGATGGAGCTGTCAATTTTCACTTTTATTGAGCTTGCAATTGCTTTGATGTGTCAATCTGAGTGAAATGCATGCTGCTGTTACATTAGTTGCAATTTGGTGTGCATAATAAGGTGAGGCTTTGTGACAGCTTTTCAGGATGGGTTTCATTTTTCCTTATTCAACTGCTCTTTCTATTATCATCCCTCTAAAATAAGTCGTTGTTTGTTTTTCAATGCCCTGGTGCTTCTTTCCTTCCAATTCTCATAGAAACTCTTGTTGATCAAATAGTGTGGTTTTCAAATCCACTAAGTGGGGCAGTTCTTGTCACAAATTAGAACATGTTTTACTGAAATGTGTGAGTGAGGTCCAAAACCCCTTAGAGGAAGGGATACAAGCCAAATATGCAAAAAGATGCTTAAAAAAATTCGATGAAACTAATGATTTTGACAACAAATGTTGGTTTATTCGATTTGGATATATATATGTTGGTCGGTTTGGTCAGTTTTTGTTGGATGGTCAGTTCGGTTAATTTTGTTTTCAAAATCATCTCGTTGGTGTTTTCTTTTTCTTATGTCAATAGATTGATTTATAGAAAATGTCTTTATTTTAGGATGTTGCAGAGGATGCAAATATATCCAAATGAGCACGACCTTGAGTTGAGGTTTGCACAACTTAGCTCTTTCCAGGCCTTAAGATCAAGTTTAATGTTTTGTATGATCATGCTCCTCCTTTACATGGTGGAACCATAACAATTGTGTTGATGAACTGCATGATGATATGATATCTTAGGTGCAAAATGGATTCGACCTTATGCACGTTGTGCACTTATATTATAGGATGTTCTTGAATTGGATCTGTCTCCTTAACAACGACCTTGCCTCCTACATTCTTTTGGATGACAAACACAAAACTGTCTTAGGTTTCTCTCACCAGATCAACCAAATTCAAACCCAAATCTTAGCAAAAATAACAGAGGTCACACAGAATCATTAGGTTTTTCTCACATCTGCCACACAGAATCAAACTCCAGGCTTCTGACAGAAATAACAGAGACCCAATAACTAATTTCAGTAGATGATGGGAATACATAAACTCACACAACAAACCTTATCATTTTCATCATGTGCTGAGTGAGGAGTAGAGCTTCCTAAGAAGCACGGATACGACACGACACGGACACGGTGACACGTCATTTTTTTAAAAAACTAGGACACGGACACGTTTAGAAAATACAATTTTTAAAATATATATCGTTTTTATACCAGAAAGAAGTTCAAAATCAATAAGTTGATGCATTTGTATACTTGAAAAAATGAATCTAATGTATTTTACTCTTAAAATTTATTATTTTTGTCATTTAAGCATTGCGTCTATTTAGTATACTTAACAAGAGTTTGAAATGAACCTACAACTAATGTTTGCCACGTATCAATTGTGCTAACAAGTGTCCGATACGTATCCAACAAGTGTTGGAGTGTCCAAGTGTCCGCACGTGTCGGACACGGACACGCTAGCCAAACTAAAGTGTCTGTGCTTCTTAGAGAGCTTCCGATGGCGAAGTAGGCTGGGGAAGGGCTGAATCAAGCATGTGAGAAGGCAGCCAGATTTGCAGCCGTGGTGATAAAAACCACGGCTGGAAATGAGTTGATGCCAATGGTGACAGACAGCAAAAGCGAGGCAGTGAGTATGCAAACGAGTGGTGCAATTGAGCCAGAAAATTCTTAG

mRNA sequence

ATGGCGAGAGAGAAGAGCCCTGGCTTAAAGATCCTCTGGGTTTGGACTATTGGCACCGCCGCCATTCTTGTTACAAGCGTTGCTCGGATGAGAATGAGGGATATGGAGAACGTTTTCAACTCCGATCAACAACAATCGCTGCAGCAGCAACAAACCTCTTCCACCGATTCGTTTCCCGTCGCCGAAGGAGACTCATCACAGGCTGGGGAAGGGCTGAATCAAGCATGTGAGAAGGCAGCCAGATTTGCAGCCGTGGTGATAAAAACCACGGCTGGAAATGAGTTGATGCCAATGGTGACAGACAGCAAAAGCGAGGCAGTGAGTATGCAAACGAGTGGTGCAATTGAGCCAGAAAATTCTTAG

Coding sequence (CDS)

ATGGCGAGAGAGAAGAGCCCTGGCTTAAAGATCCTCTGGGTTTGGACTATTGGCACCGCCGCCATTCTTGTTACAAGCGTTGCTCGGATGAGAATGAGGGATATGGAGAACGTTTTCAACTCCGATCAACAACAATCGCTGCAGCAGCAACAAACCTCTTCCACCGATTCGTTTCCCGTCGCCGAAGGAGACTCATCACAGGCTGGGGAAGGGCTGAATCAAGCATGTGAGAAGGCAGCCAGATTTGCAGCCGTGGTGATAAAAACCACGGCTGGAAATGAGTTGATGCCAATGGTGACAGACAGCAAAAGCGAGGCAGTGAGTATGCAAACGAGTGGTGCAATTGAGCCAGAAAATTCTTAG

Protein sequence

MAREKSPGLKILWVWTIGTAAILVTSVARMRMRDMENVFNSDQQQSLQQQQTSSTDSFPVAEGDSSQAGEGLNQACEKAARFAAVVIKTTAGNELMPMVTDSKSEAVSMQTSGAIEPENS

Homology

[Close]

BLAST of Lag0035196 vs. NCBI nr
Match: XP_023516467.1 (uncharacterized protein LOC111780326 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108.6 bits (270), Expect = 3.8e-20
Identity = 56/68 (82.35%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTIGTAAILVTSVARMRMRDMENVFNSDQQQSLQQQQTSSTDSFPV 60
          MAR+KSPG+KILWVWT+GTAAILVTSVAR RMRDMEN+ NSDQQ SL  QQTSSTDSF V
Sbjct: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQQTSSTDSFSV 60

Query: 61 AEGDSSQA 69
           EGD+SQA
Sbjct: 61 DEGDASQA 68

[Close]

BLAST of Lag0035196 vs. NCBI nr
Match: XP_038878707.1 (uncharacterized protein LOC120070883 [Benincasa hispida])

HSP 1 Score: 108.6 bits (270), Expect = 3.8e-20
Identity = 57/91 (62.64%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTIGTAAILVTSVARMRMRDMENVFNSDQQQSLQQQQTSSTDSFPV 60
          MAREKSPGLKILWVWT+GTAAIL+TSVARMRMRDMEN+ NSDQQ SL  QQTSSTDSFP+
Sbjct: 1  MAREKSPGLKILWVWTLGTAAILITSVARMRMRDMENIINSDQQPSLHHQQTSSTDSFPI 60

Query: 61 AEGDSSQAGEGLNQACEKAARFAAVVIKTTA 92
           +  S   G+       +   F ++  K  A
Sbjct: 61 TDSFSVDEGDASQVEVAQLGSFVSLKSKLNA 91

[Close]

BLAST of Lag0035196 vs. NCBI nr
Match: XP_022987500.1 (uncharacterized protein LOC111485045 [Cucurbita maxima] >KAG7023767.1 hypothetical protein SDJN02_14793, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.5 bits (267), Expect = 8.4e-20
Identity = 56/68 (82.35%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTIGTAAILVTSVARMRMRDMENVFNSDQQQSLQQQQTSSTDSFPV 60
          MAR+KSPG+KILWVWT+GTAAILVTSVAR RMRDMEN+ NSDQQ SL  QQTSSTDSF V
Sbjct: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQQTSSTDSFSV 60

Query: 61 AEGDSSQA 69
           EGD SQA
Sbjct: 61 DEGDVSQA 68

[Close]

BLAST of Lag0035196 vs. NCBI nr
Match: KAG7022194.1 (hypothetical protein SDJN02_15924, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-18
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTIGTAAILVTSVARMRMRDMENVFNSDQQQSL--QQQQTSSTDSF 60
          MAREKSPGLKILWVWT+GTAAILVTSVARMRMRDME++  SDQQQ    QQ+QTSSTDSF
Sbjct: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60

Query: 61 PVAEGDSSQ 68
           V EGD+S+
Sbjct: 61 FVGEGDTSE 69

[Close]

BLAST of Lag0035196 vs. NCBI nr
Match: XP_022933307.1 (uncharacterized protein LOC111440489 [Cucurbita moschata])

HSP 1 Score: 101.3 bits (251), Expect = 6.0e-18
Identity = 54/69 (78.26%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTIGTAAILVTSVARMRMRDMENVFNSDQQQSL--QQQQTSSTDSF 60
          MAREKSPGLKILWVWT+GTAAILVTSVARMRMRDME++  SDQQQ    QQ+QTSSTDSF
Sbjct: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60

Query: 61 PVAEGDSSQ 68
           V EG++S+
Sbjct: 61 FVGEGETSE 69

The following BLAST results are available for this feature:

BLAST of Lag0035196 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023516467.1	3.8e-20	82.35	uncharacterized protein LOC111780326 [Cucurbita pepo subsp. pepo]	[more]
XP_038878707.1	3.8e-20	62.64	uncharacterized protein LOC120070883 [Benincasa hispida]	[more]
XP_022987500.1	8.4e-20	82.35	uncharacterized protein LOC111485045 [Cucurbita maxima] >KAG7023767.1 hypothetic...	[more]
KAG7022194.1	2.1e-18	79.71	hypothetical protein SDJN02_15924, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022933307.1	6.0e-18	78.26	uncharacterized protein LOC111440489 [Cucurbita moschata]	[more]

BLAST of Lag0035196 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0035196.1	Lag0035196.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane