Lag0035165 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0035165
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr3: 16018467 .. 16019920 (-)
RNA-Seq Expression	Lag0035165
Synteny	Lag0035165

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAAGATCCTCCACTGCTGTCCTGCAATGAATACAACAAAGTGGTCCAACCAAGGTGGACCACCTCTCGAGACCCAATCCAAGGTCTTAGCTCTTTCGTGCATAACCTACACACACAAAGAACTTAACCTTCTTCGGAATTTCACCTTCCACATAGAGGAAAAAATAGAACCACAACAAGCATGTTTGGGCTTCCTCTTCATAAACGTCAGGCCTAAACAGAAACCATTGATAGTCGCATGAAACACTTTCTTGGAAATGGAAAGGATATATCTTTTTGGCACGATCTTTGGGTGGAAATTGGCACATTGGCAGAATCTTTTCCCAAGATATGTGGGCTCTCAAATTGACTAGACCAATCCATAGCAGGTGTTTGTGTTCATGAAACAAAACCATGGATTTGGAATTTAGAAGGTACCTAACAAATGATGAAATTACTAAATTGGCCACCCTATTGCTCATACCATCCATGGTAAGCCTCAAAGAGATGCTAGATTCATGCATCGAAATGGCCCATAGATCCTACTAGAAAATTCACCGCTAGATCATTGATGATGATGGATTTAGTTAGTGTATAATGTGTAGGAAAATTCAAAATCCCAATGCCATCTTTTTGCCCATGACTTGTTTGTATGAATCTATTGGAATGAGATGGTCAATGCATTTGACTGGTCCACATGTATGCTTGACAACAACATGGATTTTCTAGCTCTAATTCTTGTCGAGCATCCATTTAAAGGAACAAAAGCAACTGTTTGGTTGGCTACAGATAGAGCTTTTCTTTGGAATCTCTTTGGAGAAAGGAACAACGGGGGTTTTAACTTTTAGTTTTCCTCTTTTGATGGAGAGATTATTTTGGAACTTTTTATGGAAGGAGGGAGCATCTAGAACAGGCATCCATCTTGTGAATTGGAACAAAATTCTTCTCTCCTTGGACAAGGGAAGTCTCAATCTATGTTCCTTGAAAGATGAGAAAAAAGCACTCTTTGTAAAATGGATATGGTGTTACAACAATGAAAGAGATGCTATATGGAGGAAACTTATCAAAGGTAAATATGGATCAACATCCGATTGTGTATAGACAAATTTAAACACAACCAAGGGGCCTTGAAAATCCATCATCAAGCATCAAGTGGGTTTTTTTTTTTTTTTTTTAATAATAAATATTTTAACCTTATTTTTATTGAATTACCATCAAGTGGGAGATGATGCAACGACCCCTGTTTGGATCGCCCTTTGGTTATTTCCACTGGCTTCCCAATTCCCCTTGTTATACAGGTTATCTAAACATAAACCGACCACGATAAAGGATGTACGAAATTTTGAATTACTGGGACCTATCATTTGGCAGGAACTTGAAGGATGAAGAGGCAATTGAATGGGAAGAACCTGTATTTGCCCTCTCTCGAGTTTCTCTCATAAAGGGAAGATTCTTGGATATGGACAACTAG

mRNA sequence

ATGTTCAAGATCCTCCACTGCTGTCCTGCAATGAATACAACAAAGTGGTCCAACCAAGGTGGACCACCTCTCGAGACCCAATCCAAGATAGAGCTTTTCTTTGGAATCTCTTTGGAGAAAGGAACAACGGGGGTTTTAACTTTTAGTTTTCCTCTTTTGATGGAGAGATTATTTTGGAACTTTTTATGGAAGGAGGGAGCATCTAGAACAGGCATCCATCTTGTGAATTGGAACAAAATTCTTCTCTCCTTGGACAAGGGAAGTCTCAATCTATGTTCCTTGAAAGATGAGAAAAAAGCACTCTTTGTAAAATGGATATGGTGTTACAACAATGAAAGAGATGCTATATGGAGGAAACTTATCAAAGTGGGAGATGATGCAACGACCCCTGTTTGGATCGCCCTTTGGTTATTTCCACTGGCTTCCCAATTCCCCTTGTTATACAGGAACTTGAAGGATGAAGAGGCAATTGAATGGGAAGAACCTGTATTTGCCCTCTCTCGAGTTTCTCTCATAAAGGGAAGATTCTTGGATATGGACAACTAG

Coding sequence (CDS)

ATGTTCAAGATCCTCCACTGCTGTCCTGCAATGAATACAACAAAGTGGTCCAACCAAGGTGGACCACCTCTCGAGACCCAATCCAAGATAGAGCTTTTCTTTGGAATCTCTTTGGAGAAAGGAACAACGGGGGTTTTAACTTTTAGTTTTCCTCTTTTGATGGAGAGATTATTTTGGAACTTTTTATGGAAGGAGGGAGCATCTAGAACAGGCATCCATCTTGTGAATTGGAACAAAATTCTTCTCTCCTTGGACAAGGGAAGTCTCAATCTATGTTCCTTGAAAGATGAGAAAAAAGCACTCTTTGTAAAATGGATATGGTGTTACAACAATGAAAGAGATGCTATATGGAGGAAACTTATCAAAGTGGGAGATGATGCAACGACCCCTGTTTGGATCGCCCTTTGGTTATTTCCACTGGCTTCCCAATTCCCCTTGTTATACAGGAACTTGAAGGATGAAGAGGCAATTGAATGGGAAGAACCTGTATTTGCCCTCTCTCGAGTTTCTCTCATAAAGGGAAGATTCTTGGATATGGACAACTAG

Protein sequence

MFKILHCCPAMNTTKWSNQGGPPLETQSKIELFFGISLEKGTTGVLTFSFPLLMERLFWNFLWKEGASRTGIHLVNWNKILLSLDKGSLNLCSLKDEKKALFVKWIWCYNNERDAIWRKLIKVGDDATTPVWIALWLFPLASQFPLLYRNLKDEEAIEWEEPVFALSRVSLIKGRFLDMDN

Homology

[Close]

BLAST of Lag0035165 vs. NCBI nr
Match: CAN69768.1 (hypothetical protein VITISV_022063 [Vitis vinifera])

HSP 1 Score: 78.2 bits (191), Expect = 8.2e-11
Identity = 40/107 (37.38%), Postives = 55/107 (51.40%), Query Frame = 0


Query: 52  LLMERLFWNFLWKEGASRTGIHLVNWNKILLSLDKGSLNLCSLKDEKKALFVKWIWCYNN 111
           L +E++  +FLW+ GA     H+VNW+ + L   KG L +  L    K L  KWIW +  
Sbjct: 84  LRLEKIQRDFLWEGGALEKKPHVVNWDIVCLDKRKGGLRVRRLNSLNKTLLCKWIWRFAK 143

Query: 112 ERDAIWRKLIKVGDDATTPVWIALWL--FPLASQFPLLYRNLKDEEA 157
           ERDA+WR++I VG+      W   W    PL    P L+     EEA
Sbjct: 144 ERDALWREVIYVGNGRRVKFWKDGWCGDEPLCVSLPSLFALASSEEA 190

[Close]

BLAST of Lag0035165 vs. NCBI nr
Match: KAF5460976.1 (hypothetical protein F2P56_020808 [Juglans regia])

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-10
Identity = 47/158 (29.75%), Postives = 70/158 (44.30%), Query Frame = 0


Query: 16  WSNQGGPPLETQSKIELFFGI--SLEKGTTGVLTFSFPLLMERLFWNFLWKEGASRTGIH 75
           WS+ GGP         ++ GI   +E+   GV        +E+ F +FLW         H
Sbjct: 154 WSSSGGP----HKSKAMWDGIVEKIERKLAGVAH-----RLEKTFRDFLWGSLEDEKKFH 213

Query: 76  LVNWNKILLSLDKGSLNLCSLKDEKKALFVKWIWCYNNERDAIWRKLI------------ 135
           L+ W  +   L  G L LC+L+   KAL  KW+W Y+ ER A+WR+++            
Sbjct: 214 LIKWENVCTPLSNGGLGLCNLRTFNKALLGKWLWRYHRERGALWREIVDVKYGSMQGGWF 273

Query: 136 KVGDDATTPVWIALWLFPLASQ--FPLLYRNLKDEEAI 158
            VG       W   W   +A +  FP  +R   D++AI
Sbjct: 274 AVGRGTQVSFWHDTWCGEVALKIAFPSRFRIAFDKDAI 302

[Close]

BLAST of Lag0035165 vs. NCBI nr
Match: RVW80570.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-09
Identity = 43/121 (35.54%), Postives = 58/121 (47.93%), Query Frame = 0


Query: 52  LLMERLFWNFLWKEGASRTGIHLVNWNKILLSLDKGSLNLCSLKDEKKALFVKWIWCYNN 111
           L +ER+   FLW  GA    IHLV W  + L  D G L + SL    KAL  KW W +  
Sbjct: 106 LRLERIQREFLWGGGALERKIHLVKWELVCLEKDNGGLGVKSLSILNKALLCKWSWRFAM 165

Query: 112 ERDAIWRKLI--KVGDDATTPVWIALWL------FPLASQFPLLYRNLKDEEAIEWEEPV 165
           ER+A W ++I  K G++     WI  W        PL   FP L+     ++A  W + V
Sbjct: 166 EREAFWNQVIRGKYGEEQGGDAWIKFWKDIWCGDEPLCVSFPSLFALAVSKDA--WVKDV 224

[Close]

BLAST of Lag0035165 vs. NCBI nr
Match: KAE8714051.1 (Myosin-15 [Hibiscus syriacus])

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-09
Identity = 28/70 (40.00%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 60   NFLWKEGASRTGIHLVNWNKILLSLDKGSLNLCSLKDEKKALFVKWIWCYNNERDAIWRK 119
            NFLW EG+S++ IH VNW ++ LS+++G L +  L    + L  KW+W + NE+D++W+ 
Sbjct: 1559 NFLWGEGSSKSRIHWVNWKRVCLSIEEGGLGVLDLNFANRVLLGKWVWKFANEKDSLWKN 1618

Query: 120  LIKVGDDATT 130
            +I    +A+T
Sbjct: 1619 MICSIHNAST 1628

[Close]

BLAST of Lag0035165 vs. NCBI nr
Match: KAE8691187.1 (hypothetical protein F3Y22_tig00110890pilonHSYRG00015 [Hibiscus syriacus])

HSP 1 Score: 73.2 bits (178), Expect = 2.6e-09
Identity = 28/70 (40.00%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 60   NFLWKEGASRTGIHLVNWNKILLSLDKGSLNLCSLKDEKKALFVKWIWCYNNERDAIWRK 119
            NFLW EG+S++ IH VNW ++ LS+++G L +  L    + L  KW+W + NE+D++W+ 
Sbjct: 1712 NFLWGEGSSKSRIHWVNWKRVCLSVEEGGLGVLDLNFANRVLLGKWVWKFANEKDSLWKN 1771

Query: 120  LIKVGDDATT 130
            +I    +A+T
Sbjct: 1772 MICSIHNAST 1781

The following BLAST results are available for this feature:

BLAST of Lag0035165 vs. NCBI nr


Match Name	E-value	Identity	Description
CAN69768.1	8.2e-11	37.38	hypothetical protein VITISV_022063 [Vitis vinifera]	[more]
KAF5460976.1	1.8e-10	29.75	hypothetical protein F2P56_020808 [Juglans regia]	[more]
RVW80570.1	1.5e-09	35.54	putative ribonuclease H protein [Vitis vinifera]	[more]
KAE8714051.1	2.0e-09	40.00	Myosin-15 [Hibiscus syriacus]	[more]
KAE8691187.1	2.6e-09	40.00	hypothetical protein F3Y22_tig00110890pilonHSYRG00015 [Hibiscus syriacus]	[more]

BLAST of Lag0035165 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0035165.1	Lag0035165.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding