Lag0035081 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0035081
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr3: 14614751 .. 14615284 (+)
RNA-Seq Expression	Lag0035081
Synteny	Lag0035081

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGATGGAGAGATGTGGCGAATGAAGTGATATATGGTACATGAAAAGCTTACTTTTTTAATCTCTTACTTGCAATTTTCGAATTTCGAAAAGCTCAGCTTAGACAACGCAAACAAAAAATGAAAAAATAAATAAATGAAAGACGAATAAGAATAAGACAGTCATGGAGAAAAAGACGATGAGACATAAAAAATAAAAATGAAGTTATTAATTTAGTATTAATAATATACTTTTTTAATTGGACATTATGTTTCTTTTTCCTCTACAAATTTTGTAGTTTTTTGTTAGATAAAAATTTTGTGCATTTAGTTAATCAAGAACGAAAGTTGGGGACTCGAAGACGATCAGATATCGTCCTAGTCTCAACCATAAATGATGCCGACCAGGGATTGGCGGATGTTGCTTTAAGGACTCCGCCAGAACCTTATGAGAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCGTAAGGTTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGACTTAA

mRNA sequence

ATGAAGAGATGGAGAGATGTGGCGAATGAAGTGATATATGTTAATCAAGAACGAAAGTTGGGGACTCGAAGACGATCAGATATCGTCCTAGTCTCAACCATAAATGATGCCGACCAGGGATTGGCGGATGTTGCTTTAAGGACTCCGCCAGAACCTTATGAGAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCGTAAGGTTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGACTTAA

Coding sequence (CDS)

ATGAAGAGATGGAGAGATGTGGCGAATGAAGTGATATATGTTAATCAAGAACGAAAGTTGGGGACTCGAAGACGATCAGATATCGTCCTAGTCTCAACCATAAATGATGCCGACCAGGGATTGGCGGATGTTGCTTTAAGGACTCCGCCAGAACCTTATGAGAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCGTAAGGTTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGACTTAA

Protein sequence

MKRWRDVANEVIYVNQERKLGTRRRSDIVLVSTINDADQGLADVALRTPPEPYEKSKSLGSGGSMVVRLKLKGIDGRAPPGVEPAT

Homology

[Close]

BLAST of Lag0035081 vs. NCBI nr
Match: KAE8652002.1 (hypothetical protein Csa_021689 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 4.1e-29
Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 12  IYVNQERKLGTRRRSDIVLVSTINDADQGLADVALRTPPEPYEKSKSLGSGGSMVVRLKL 71
           +++NQERKLG RRRSD VLVSTINDADQGLADVALRTPP PYEKSKSLGSGGSMV RLKL
Sbjct: 38  VFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKL 97

Query: 72  KGIDGRAPPGVEPA 86
           KGIDGRAPPGVEPA
Sbjct: 98  KGIDGRAPPGVEPA 111

[Close]

BLAST of Lag0035081 vs. NCBI nr
Match: KAG6484325.1 (hypothetical protein ZIOFF_061128 [Zingiber officinale])

HSP 1 Score: 135.6 bits (340), Expect = 2.1e-28
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 12  IYVNQERKLGTRRRSDIVLVSTINDADQGLADVALRTPPEPYEKSKSLGSGGSMVVRLKL 71
           +++NQERKLG RRRSD VLVSTINDADQG ADVALRTPP PYEKSKSLGSGGSMV RLKL
Sbjct: 330 VFINQERKLGARRRSDTVLVSTINDADQGSADVALRTPPAPYEKSKSLGSGGSMVARLKL 389

Query: 72  KGIDGRAPPGVEPA 86
           KGIDGRAPPGVEPA
Sbjct: 390 KGIDGRAPPGVEPA 403

[Close]

BLAST of Lag0035081 vs. NCBI nr
Match: THU64758.1 (hypothetical protein C4D60_Mb01t29820 [Musa balbisiana] >THU64761.1 hypothetical protein C4D60_Mb01t29850 [Musa balbisiana])

HSP 1 Score: 135.6 bits (340), Expect = 2.1e-28
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 12 IYVNQERKLGTRRRSDIVLVSTINDADQGLADVALRTPPEPYEKSKSLGSGGSMVVRLKL 71
          +++NQERKLG RRRSD VLVSTINDADQG ADVALRTPP PYEKSKSLGSGGSMV RLKL
Sbjct: 21 VFINQERKLGARRRSDTVLVSTINDADQGSADVALRTPPAPYEKSKSLGSGGSMVARLKL 80

Query: 72 KGIDGRAPPGVEPA 86
          KGIDGRAPPGVEPA
Sbjct: 81 KGIDGRAPPGVEPA 94

[Close]

BLAST of Lag0035081 vs. NCBI nr
Match: KAG6466666.1 (hypothetical protein ZIOFF_075520 [Zingiber officinale])

HSP 1 Score: 135.6 bits (340), Expect = 2.1e-28
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 12  IYVNQERKLGTRRRSDIVLVSTINDADQGLADVALRTPPEPYEKSKSLGSGGSMVVRLKL 71
           +++NQERKLG RRRSD VLVSTINDADQG ADVALRTPP PYEKSKSLGSGGSMV RLKL
Sbjct: 633 VFINQERKLGARRRSDTVLVSTINDADQGSADVALRTPPAPYEKSKSLGSGGSMVARLKL 692

Query: 72  KGIDGRAPPGVEPA 86
           KGIDGRAPPGVEPA
Sbjct: 693 KGIDGRAPPGVEPA 706

[Close]

BLAST of Lag0035081 vs. NCBI nr
Match: KAG6466662.1 (hypothetical protein ZIOFF_075511 [Zingiber officinale])

HSP 1 Score: 135.6 bits (340), Expect = 2.1e-28
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 12  IYVNQERKLGTRRRSDIVLVSTINDADQGLADVALRTPPEPYEKSKSLGSGGSMVVRLKL 71
           +++NQERKLG RRRSD VLVSTINDADQG ADVALRTPP PYEKSKSLGSGGSMV RLKL
Sbjct: 445 VFINQERKLGARRRSDTVLVSTINDADQGSADVALRTPPAPYEKSKSLGSGGSMVARLKL 504

Query: 72  KGIDGRAPPGVEPA 86
           KGIDGRAPPGVEPA
Sbjct: 505 KGIDGRAPPGVEPA 518

The following BLAST results are available for this feature:

BLAST of Lag0035081 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652002.1	4.1e-29	90.54	hypothetical protein Csa_021689 [Cucumis sativus]	[more]
KAG6484325.1	2.1e-28	89.19	hypothetical protein ZIOFF_061128 [Zingiber officinale]	[more]
THU64758.1	2.1e-28	89.19	hypothetical protein C4D60_Mb01t29820 [Musa balbisiana] >THU64761.1 hypothetical...	[more]
KAG6466666.1	2.1e-28	89.19	hypothetical protein ZIOFF_075520 [Zingiber officinale]	[more]
KAG6466662.1	2.1e-28	89.19	hypothetical protein ZIOFF_075511 [Zingiber officinale]	[more]

BLAST of Lag0035081 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34410	INTRON-ENCODED HOMING ENDONUCLEASE, PUTATIVE-RELATED	coord: 12..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0035081.1	Lag0035081.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
molecular_function	GO:0004519	endonuclease activity