Lag0035023 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0035023
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr3: 13718964 .. 13719272 (-)
RNA-Seq ExpressionLag0035023
SyntenyLag0035023
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGAGATTGATTTAAAGCGAAAGCATTGTGCCAACTTGCGTACAAGATTGATATATGGATTTGATACTCTAGCTAGTAAATCCTCTTCAACGGTTTTTTCGTACAGGCTAAGGTCTATTGGCTTTCTTGCTTATGCGGTACTTCGACTACTAAGCCTCGCTTACGCACCGAAAAAGATCGTCGATAGGAAAGCTCTGTTACGCACCAACGACGGCTCCTTCTCTTTACCTTTCTTGTCCTCTACCTCAGTCCTTTGCTGGCTTGAATTAATTCCATCTCTGTTTCTTGATTTTAAAAGTGTCTAA

mRNA sequence

ATGAACGAGATTGATTTAAAGCGAAAGCATTGTGCCAACTTGCGTACAAGATTGATATATGGATTTGATACTCTAGCTAGTAAATCCTCTTCAACGGTTTTTTCGTACAGGCTAAGGTCTATTGGCTTTCTTGCTTATGCGGTACTTCGACTACTAAGCCTCGCTTACGCACCGAAAAAGATCGTCGATAGGAAAGCTCTGTTACGCACCAACGACGGCTCCTTCTCTTTACCTTTCTTGTCCTCTACCTCAGTCCTTTGCTGGCTTGAATTAATTCCATCTCTGTTTCTTGATTTTAAAAGTGTCTAA

Coding sequence (CDS)

ATGAACGAGATTGATTTAAAGCGAAAGCATTGTGCCAACTTGCGTACAAGATTGATATATGGATTTGATACTCTAGCTAGTAAATCCTCTTCAACGGTTTTTTCGTACAGGCTAAGGTCTATTGGCTTTCTTGCTTATGCGGTACTTCGACTACTAAGCCTCGCTTACGCACCGAAAAAGATCGTCGATAGGAAAGCTCTGTTACGCACCAACGACGGCTCCTTCTCTTTACCTTTCTTGTCCTCTACCTCAGTCCTTTGCTGGCTTGAATTAATTCCATCTCTGTTTCTTGATTTTAAAAGTGTCTAA

Protein sequence

MNEIDLKRKHCANLRTRLIYGFDTLASKSSSTVFSYRLRSIGFLAYAVLRLLSLAYAPKKIVDRKALLRTNDGSFSLPFLSSTSVLCWLELIPSLFLDFKSV
Homology
[Close]
BLAST of Lag0035023 vs. NCBI nr
Match: VAI85562.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 77.4 bits (189), Expect = 7.9e-11
Identity = 40/52 (76.92%), Postives = 42/52 (80.77%), Query Frame = 0 

Query: 39 RSIGFLAYAVLRLLSLAYAPKKIVDRKALLRTNDGSFSLPFLSSTSVLCWLE 91
          RSIGF+AY VLR  SLAYAP+KIVDRK LL TNDG FSLP  S TSV CWLE
Sbjct: 5  RSIGFIAYVVLRPRSLAYAPRKIVDRKDLLCTNDGPFSLPLSSHTSVHCWLE 56

[Close]
BLAST of Lag0035023 vs. NCBI nr
Match: VAI24700.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 77.4 bits (189), Expect = 7.9e-11
Identity = 40/52 (76.92%), Postives = 42/52 (80.77%), Query Frame = 0 

Query: 39 RSIGFLAYAVLRLLSLAYAPKKIVDRKALLRTNDGSFSLPFLSSTSVLCWLE 91
          RSIGF+AY VLR  SLAYAP+KIVDRK LL TNDG FSLP  S TSV CWLE
Sbjct: 5  RSIGFIAYVVLRPRSLAYAPRKIVDRKDLLCTNDGPFSLPLSSHTSVHCWLE 56

[Close]
BLAST of Lag0035023 vs. NCBI nr
Match: VAI60895.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-10
Identity = 39/52 (75.00%), Postives = 42/52 (80.77%), Query Frame = 0 

Query: 39 RSIGFLAYAVLRLLSLAYAPKKIVDRKALLRTNDGSFSLPFLSSTSVLCWLE 91
          RSIGF+AY VLR  SLAYAP+KIVDRK LL TNDG FSLP  S TSV CW+E
Sbjct: 5  RSIGFIAYVVLRPRSLAYAPRKIVDRKDLLCTNDGPFSLPLSSHTSVHCWIE 56

[Close]
BLAST of Lag0035023 vs. NCBI nr
Match: VAH23508.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-10
Identity = 40/52 (76.92%), Postives = 42/52 (80.77%), Query Frame = 0 

Query: 39 RSIGFLAYAVLRLLSLAYAPKKIVDRKALLRTNDGSFSLPFLSSTSVLCWLE 91
          RSIGF+AY VLRL SLAYA +KIVDRK LL TNDG FSLP  S TSV CWLE
Sbjct: 5  RSIGFIAYVVLRLRSLAYALRKIVDRKDLLCTNDGPFSLPLSSHTSVHCWLE 56

[Close]
BLAST of Lag0035023 vs. NCBI nr
Match: VAH46681.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 71.2 bits (173), Expect = 5.7e-09
Identity = 38/52 (73.08%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 39 RSIGFLAYAVLRLLSLAYAPKKIVDRKALLRTNDGSFSLPFLSSTSVLCWLE 91
          RSIGF+AY VLR  SLAYA +KIVDRK LL TNDG FSLP  S TSV CW E
Sbjct: 5  RSIGFIAYVVLRPRSLAYARRKIVDRKDLLCTNDGPFSLPLSSHTSVHCWPE 56

The following BLAST results are available for this feature:
BLAST of Lag0035023 vs. NCBI nr
Match NameE-valueIdentityDescription
VAI85562.17.9e-1176.92unnamed protein product [Triticum turgidum subsp. durum][more]
VAI24700.17.9e-1176.92unnamed protein product [Triticum turgidum subsp. durum][more]
VAI60895.11.3e-1075.00unnamed protein product [Triticum turgidum subsp. durum][more]
VAH23508.11.8e-1076.92unnamed protein product [Triticum turgidum subsp. durum][more]
VAH46681.15.7e-0973.08unnamed protein product [Triticum turgidum subsp. durum][more]
BLAST of Lag0035023 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0035023.1Lag0035023.1mRNA