Lag0034997 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0034997
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	UBN2_3 domain-containing protein
Location	chr3: 13426688 .. 13427074 (-)
RNA-Seq Expression	Lag0034997
Synteny	Lag0034997

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAACACTGAGATTTCGCCGATCGCAGAGAAGCCCGATGGTGAAGATCCTTCCAAATCAGGTGCACCGGAGAACTCTAGCTCGAGGAAGACCGACAAAGGAAAAGAAATTATTGTGGAGCAAAACCCTTACCAGGTGATGTACAAAAATCAATCACTTGGAACACCCACCTTCACGAATCTCCTCAACCAGGTGACTTCCATCAAACTCGACCGAACGAACTACCTTCTCTGGCAGAACATAGTCATCCCTATCCTCAAGAGTTACAAGCTTGAAGGCCATCTATCCGGAAAGACACAGACACCAGAACAAACGATTATTATACCTCCCTCAAAAGAAGAACCACTCGGCCTGGAAATCCCAAATTCGGAGCATGATATCTAG

mRNA sequence

ATGACCAACACTGAGATTTCGCCGATCGCAGAGAAGCCCGATGGTGAAGATCCTTCCAAATCAGGTGCACCGGAGAACTCTAGCTCGAGGAAGACCGACAAAGGAAAAGAAATTATTGTGGAGCAAAACCCTTACCAGGTGATGTACAAAAATCAATCACTTGGAACACCCACCTTCACGAATCTCCTCAACCAGGTGACTTCCATCAAACTCGACCGAACGAACTACCTTCTCTGGCAGAACATAGTCATCCCTATCCTCAAGAGTTACAAGCTTGAAGGCCATCTATCCGGAAAGACACAGACACCAGAACAAACGATTATTATACCTCCCTCAAAAGAAGAACCACTCGGCCTGGAAATCCCAAATTCGGAGCATGATATCTAG

Coding sequence (CDS)

ATGACCAACACTGAGATTTCGCCGATCGCAGAGAAGCCCGATGGTGAAGATCCTTCCAAATCAGGTGCACCGGAGAACTCTAGCTCGAGGAAGACCGACAAAGGAAAAGAAATTATTGTGGAGCAAAACCCTTACCAGGTGATGTACAAAAATCAATCACTTGGAACACCCACCTTCACGAATCTCCTCAACCAGGTGACTTCCATCAAACTCGACCGAACGAACTACCTTCTCTGGCAGAACATAGTCATCCCTATCCTCAAGAGTTACAAGCTTGAAGGCCATCTATCCGGAAAGACACAGACACCAGAACAAACGATTATTATACCTCCCTCAAAAGAAGAACCACTCGGCCTGGAAATCCCAAATTCGGAGCATGATATCTAG

Protein sequence

MTNTEISPIAEKPDGEDPSKSGAPENSSSRKTDKGKEIIVEQNPYQVMYKNQSLGTPTFTNLLNQVTSIKLDRTNYLLWQNIVIPILKSYKLEGHLSGKTQTPEQTIIIPPSKEEPLGLEIPNSEHDI

Homology

[Close]

BLAST of Lag0034997 vs. NCBI nr
Match: KAA0066132.1 (putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa] >TYK15175.1 putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 2.4e-09
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 53  SLGTPTFTNLLNQVTSIKLDRTNYLLWQNIVIPILKSYKLEGHLSGKTQTPEQTIIIPPS 112
           S   P    +LNQ+T+IKLDR+NYLLW+ + +PILK YKLEGHL+G+   PE+ + I  S
Sbjct: 18  SFTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGHLTGEKPCPEKFVTITSS 77

[Close]

BLAST of Lag0034997 vs. NCBI nr
Match: XP_031745012.1 (uncharacterized protein LOC116405217 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 9.3e-09
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 53  SLGTPTFTNLLNQVTSIKLDRTNYLLWQNIVIPILKSYKLEGHLSGKTQTPEQTIIIP 111
           +   P    +LNQ+ S+KLDR NYLLWQ + +PILKSYKL+GHL+ + Q P + II P
Sbjct: 14  NFSNPPLNQILNQLASVKLDRGNYLLWQTLALPILKSYKLQGHLTEENQCPPKFIINP 71

[Close]

BLAST of Lag0034997 vs. NCBI nr
Match: KAA0026100.1 (uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 7.8e-08
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 57  PTFTNLLNQVTSIKLDRTNYLLWQNIVIPILKSYKLEGHLSGKTQTPEQTII 109
           P    +LNQ+ ++KLDR NYLLW+ + +PILK YKLEGHL+G+T  P   ++
Sbjct: 21  PPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHLTGETPCPSHFVL 72

[Close]

BLAST of Lag0034997 vs. NCBI nr
Match: KAA0060627.1 (Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 7.8e-08
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 47  VMYKNQSLGTPTFTNLLNQVTSIKLDRTNYLLWQNIVIPILKSYKLEGHLSGKTQTPEQT 106
           V +   +   P    LLNQ++S+KLDR NYLLW+ + +PI+KSYK EGHL+G+   P + 
Sbjct: 8   VEFLTTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKF 67

Query: 107 I 108
           I
Sbjct: 68  I 68

[Close]

BLAST of Lag0034997 vs. NCBI nr
Match: TYK02246.1 (uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 7.8e-08
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 47  VMYKNQSLGTPTFTNLLNQVTSIKLDRTNYLLWQNIVIPILKSYKLEGHLSGKTQTPEQT 106
           V +   +   P    LLNQ++S+KLDR NYLLW+ + +PI+KSYK EGHL+G+   P + 
Sbjct: 8   VEFLTTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKF 67

Query: 107 I 108
           I
Sbjct: 68  I 68

The following BLAST results are available for this feature:

BLAST of Lag0034997 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066132.1	2.4e-09	53.33	putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. mak...	[more]
XP_031745012.1	9.3e-09	53.45	uncharacterized protein LOC116405217 [Cucumis sativus]	[more]
KAA0026100.1	7.8e-08	51.92	uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa]	[more]
KAA0060627.1	7.8e-08	47.54	Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa]	[more]
TYK02246.1	7.8e-08	47.54	uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0034997 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0034997.1	Lag0034997.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0016772	transferase activity, transferring phosphorus-containing groups