Lag0034996 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0034996
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGag/pol polyprotein-maize retrotransposon Hopscotch
Locationchr3: 13424971 .. 13425606 (-)
RNA-Seq ExpressionLag0034996
SyntenyLag0034996
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACGAATACTTAGACACTATAAAAAGGTACTTCGACAACCTTCAAGTAGCTGGTTTTCCAATGGACATGAGGAATTTTGTGTCCCATGTCACTTCTGGATTAGATGAAGAATACACTCCCATAGTATGTGTGATAAGAAGTCAAAACTTCTCATGGAGTGAGATACAACTTGAACTTTTTTCATTTGAGCAAACATTGGAGAGGCTACAGGCACTCAAAGGCAATATCTCAGTGAACCTCAACTCAACTCACCTCCCCTCTGTCAATGTAGCTAATGCTGAAGGCACAAGACAACCATCTCACGGTCAAAATACCAACCATTTCCAGTCGAGTAGAAACGACTCCTCTGCTAACAACAACCATCAGAATCGAGGATATGGTTCAAAGAGAGGAAATAGGTATTGAGCCAGAGGCAGATATTCTCCTTATCCACCCAACAACCGACCCATCTGTCAACTGTGTGGGAAAATGGGGCATACGGTTGTAATTTGTCATCACAGGTATGATAAAGCTGATTGTTCACCTTCTGGAGCTCCTCCCGCCAACACTGCCCATTCTTCACCACCGGAGTCAAGCACCACCAATCCCACAACCTTGATGGCCTATCCTGAGACTCTCCAAGATCCATCGTAG

mRNA sequence

ATGCACGAATACTTAGACACTATAAAAAGGTACTTCGACAACCTTCAAGTAGCTGGTTTTCCAATGGACATGAGGAATTTTGTGTCCCATGTCACTTCTGGATTAGATGAAGAATACACTCCCATAGTATGTGTGATAAGAAGTCAAAACTTCTCATGGAGTGAGATACAACTTGAACTTTTTTCATTTGAGCAAACATTGGAGAGGCTACAGGCACTCAAAGGCAATATCTCAGTGAACCTCAACTCAACTCACCTCCCCTCTGTCAATGTAGCTAATGCTGAAGGCACAAGACAACCATCTCACGGTCAAAATACCAACCATTTCCAGTCGAGTAGAAACGACTCCTCTGCTAACAACAACCATCAGAATCGAGGATATGGTTCAAAGAGAGGAAATAGGTATGATAAAGCTGATTGTTCACCTTCTGGAGCTCCTCCCGCCAACACTGCCCATTCTTCACCACCGGAGTCAAGCACCACCAATCCCACAACCTTGATGGCCTATCCTGAGACTCTCCAAGATCCATCGTAG

Coding sequence (CDS)

ATGCACGAATACTTAGACACTATAAAAAGGTACTTCGACAACCTTCAAGTAGCTGGTTTTCCAATGGACATGAGGAATTTTGTGTCCCATGTCACTTCTGGATTAGATGAAGAATACACTCCCATAGTATGTGTGATAAGAAGTCAAAACTTCTCATGGAGTGAGATACAACTTGAACTTTTTTCATTTGAGCAAACATTGGAGAGGCTACAGGCACTCAAAGGCAATATCTCAGTGAACCTCAACTCAACTCACCTCCCCTCTGTCAATGTAGCTAATGCTGAAGGCACAAGACAACCATCTCACGGTCAAAATACCAACCATTTCCAGTCGAGTAGAAACGACTCCTCTGCTAACAACAACCATCAGAATCGAGGATATGGTTCAAAGAGAGGAAATAGGTATGATAAAGCTGATTGTTCACCTTCTGGAGCTCCTCCCGCCAACACTGCCCATTCTTCACCACCGGAGTCAAGCACCACCAATCCCACAACCTTGATGGCCTATCCTGAGACTCTCCAAGATCCATCGTAG

Protein sequence

MHEYLDTIKRYFDNLQVAGFPMDMRNFVSHVTSGLDEEYTPIVCVIRSQNFSWSEIQLELFSFEQTLERLQALKGNISVNLNSTHLPSVNVANAEGTRQPSHGQNTNHFQSSRNDSSANNNHQNRGYGSKRGNRYDKADCSPSGAPPANTAHSSPPESSTTNPTTLMAYPETLQDPS
Homology
BLAST of Lag0034996 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-11
Identity = 62/179 (34.64%), Postives = 93/179 (51.96%), Query Frame = 0

Query: 1   MHEYLDTIKRYFDNLQVAGFPMDMRNFVSHVTSGLDEEYTPIVCVIRSQ-NFSWSEIQLE 60
           M EYL  +K + DNL +AG  + +R+ VS V +GLDEEY PIV  ++ + N SWSE+  E
Sbjct: 168 MIEYLKLMKSHADNLALAGSSVSVRDLVSQVLTGLDEEYNPIVVAVQGKVNLSWSEMHAE 227

Query: 61  LFSFEQTLERLQALKGNISVNLNSTHLPSVNVANAEGTRQPSHGQNTNHFQSSRNDSSAN 120
           L ++E+ LE   +LK  I +  N T  PSVN  +    +       TN   ++ N+S  +
Sbjct: 228 LLTYEKRLEYQNSLKSGIPI--NQTQTPSVNYVDGRSFQ-------TNQRTNNGNNSHGS 287

Query: 121 NNHQNRGY-GSKRGNRYDKADCSPSGAPPANTAHSSPPESSTTNPTTLMAYPETLQDPS 178
           N H+  GY     G R       P+       ++S P   +  + +T +  PET+ DPS
Sbjct: 288 NTHRGGGYQRGSFGQRNRGRGPQPTQHKNFTPSNSGPNVFAAHHTSTTVTTPETVIDPS 337

BLAST of Lag0034996 vs. NCBI nr
Match: XP_038875081.1 (uncharacterized protein LOC120067610 [Benincasa hispida])

HSP 1 Score: 75.9 bits (185), Expect = 4.0e-10
Identity = 49/124 (39.52%), Postives = 74/124 (59.68%), Query Frame = 0

Query: 1   MHEYLDTIKRYFDNLQVAGFPMDMRNFVSHVTSGLDEEYTPIVCVIRSQNFS-WSEIQLE 60
           M EYL   K+Y DNL  AG PM   + +S V SGLDEEY P+V  ++S+  + WS++Q +
Sbjct: 42  MSEYLTLTKKYADNLAFAGPPMSPPDLISQVLSGLDEEYNPVVVAVKSKGTTRWSDLQSD 101

Query: 61  LFSFEQTLERLQALKGNISVNLN---STHLPSVNVANAEGTRQPSHGQNTNHFQSSRNDS 120
           L S+E+ LE   A+K NI+   N   S++ PSVNV       Q S    +N +++S  ++
Sbjct: 102 LLSYEKRLEYQLAIKTNITGMTNVSISSNSPSVNVV------QNSPSTLSNPYRNSYGNN 159

BLAST of Lag0034996 vs. NCBI nr
Match: TXG47862.1 (hypothetical protein EZV62_027156 [Acer yangbiense])

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-08
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 0

Query: 1   MHEYLDTIKRYFDNLQVAGFPMDMRNFVSHVTSGLD-EEYTPIVCVI-RSQNFSWSEIQL 60
           M +YL   KR  DNL +AG P+ +++ VS + +GLD  EY P+VC I   ++ SW ++Q 
Sbjct: 184 MSDYLKMAKRLTDNLALAGRPVPLKDLVSQILNGLDSHEYNPLVCQINEKEDISWIDLQA 243

Query: 61  ELFSFEQTLERLQALKGNISVNLNSTHLPSVNVANAEGTRQPSHGQNT 107
           +L S+E+ LE++ A  G  S+NL       V   N  G    + GQ T
Sbjct: 244 KLLSYEKRLEQMNA--GIASINLGQAAANFVGTKNIGGQSVQNRGQGT 289

BLAST of Lag0034996 vs. NCBI nr
Match: TXG47047.1 (hypothetical protein EZV62_026341 [Acer yangbiense])

HSP 1 Score: 70.1 bits (170), Expect = 2.2e-08
Identity = 39/101 (38.61%), Postives = 59/101 (58.42%), Query Frame = 0

Query: 1   MHEYLDTIKRYFDNLQVAGFPMDMRNFVSHVTSGLD-EEYTPIVCVI-RSQNFSWSEIQL 60
           M +YL   KR  DNL +AG P+ + + VS + +GLD  EY P+VC I   ++ SW ++Q 
Sbjct: 286 MSDYLKMAKRLIDNLALAGRPVPLEDLVSQILNGLDSHEYNPLVCQINEKEDISWIDLQA 345

Query: 61  ELFSFEQTLERLQALKGNISVNLNSTHLPSVNVANAEGTRQ 100
           +L S+E+ LE++ A  G  S+NL       V   N  GT++
Sbjct: 346 KLLSYEKRLEQMNA--GISSINLGQATANFVGTKNIGGTQE 384

BLAST of Lag0034996 vs. NCBI nr
Match: QWX09785.1 (hydroxymethylglutaryl-CoA synthase [Pistacia terebinthus subsp. palaestina])

HSP 1 Score: 68.2 bits (165), Expect = 8.3e-08
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 0

Query: 1   MHEYLDTIKRYFDNLQVAGFPMDMRNFVSHVTSGLDEEYTPIVCVI-RSQNFSWSEIQLE 60
           M EYL T+K + DNL +AG P+ + + ++ +  GLD EYTPIV  +   ++ SW E+Q  
Sbjct: 161 MEEYLTTMKAFSDNLTLAGSPISLSDLITQILIGLDAEYTPIVVHLGDKESLSWIELQTT 220

Query: 61  LFSFEQTLERLQALK-GNISVNLNSTHL 87
           L +FE  LE+L   + G I+++  + H+
Sbjct: 221 LLTFESRLEQLNTYQNGGINLSQATAHI 248

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022151683.11.6e-1134.64uncharacterized protein LOC111019598 [Momordica charantia][more]
XP_038875081.14.0e-1039.52uncharacterized protein LOC120067610 [Benincasa hispida][more]
TXG47862.11.7e-0837.96hypothetical protein EZV62_027156 [Acer yangbiense][more]
TXG47047.12.2e-0838.61hypothetical protein EZV62_026341 [Acer yangbiense][more]
QWX09785.18.3e-0838.64hydroxymethylglutaryl-CoA synthase [Pistacia terebinthus subsp. palaestina][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..177
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..128
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..177

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0034996.1Lag0034996.1mRNA