Lag0034940 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0034940
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionMuDRA-like transposase
Locationchr3: 12678710 .. 12679236 (-)
RNA-Seq ExpressionLag0034940
SyntenyLag0034940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCACCAATCTTGCGGAGTGCACTAACTCAGTGTTGAAAGATGCACGAGAGCTCCCAATCACCGCATTCATGAATCATATCAGAGGGTGGCTACAAGCAAAATACTACAAACGCGGGAATAAGCACTCTAGTAACCCGAGCCAGTGGTCGAAGTTTGCAACGAAAAATTTGGAAAAAGCAGAGGAGAAGTGACGGAGGCACGTGGTCAAACCTATTGCTCGATATGAGTTTGATGTCGAGGACGGACATCTGGGTGGAGTGTCAACCTTCACGCTAGAACATGCACCTGTCATGAATTTGAGTATTACGAACTTCCATGCTCCCATGCGATCGCTGCATGCATTTATGGACATATAGACTATCATACACTTTGTTCCAGAGTCTACCATGTGGATTCTTTGATAAATGCATATGCACAGCCCATACAACCCCTTGGGCATGAGTCGAAGTGGAAGAGGTCACCTCAATTCGTCGATGTGGAAGTCTTGCCTCCTCGAAGAGTGTCTAGAGTTGGTCGTCGTTAA

mRNA sequence

ATGTCCACCAATCTTGCGGAGTGCACTAACTCAGTGTTGAAAGATGCACGAGAGCTCCCAATCACCGCATTCATGAATCATATCAGAGGGTGGCTACAAGCAAAATACTACAAACGCGGGAATAAGCACTCTAGTAACCCGAGCCAGTGGTCGAAAGTCTACCATGTGGATTCTTTGATAAATGCATATGCACAGCCCATACAACCCCTTGGGCATGAGTCGAAGTGGAAGAGGTCACCTCAATTCGTCGATGTGGAAGTCTTGCCTCCTCGAAGAGTGTCTAGAGTTGGTCGTCGTTAA

Coding sequence (CDS)

ATGTCCACCAATCTTGCGGAGTGCACTAACTCAGTGTTGAAAGATGCACGAGAGCTCCCAATCACCGCATTCATGAATCATATCAGAGGGTGGCTACAAGCAAAATACTACAAACGCGGGAATAAGCACTCTAGTAACCCGAGCCAGTGGTCGAAAGTCTACCATGTGGATTCTTTGATAAATGCATATGCACAGCCCATACAACCCCTTGGGCATGAGTCGAAGTGGAAGAGGTCACCTCAATTCGTCGATGTGGAAGTCTTGCCTCCTCGAAGAGTGTCTAGAGTTGGTCGTCGTTAA

Protein sequence

MSTNLAECTNSVLKDARELPITAFMNHIRGWLQAKYYKRGNKHSSNPSQWSKVYHVDSLINAYAQPIQPLGHESKWKRSPQFVDVEVLPPRRVSRVGRR
Homology
BLAST of Lag0034940 vs. NCBI nr
Match: XP_022151004.1 (uncharacterized protein LOC111019024 [Momordica charantia])

HSP 1 Score: 82.4 bits (202), Expect = 2.4e-12
Identity = 50/135 (37.04%), Postives = 69/135 (51.11%), Query Frame = 0

Query: 1   MSTNLAECTNSVLKDARELPITAFMNHIRGWLQAKYYKRGNKHSS--------------- 60
           M+TN+AE  N++ + AR+LP+TA ++HIRG LQ  +Y R    +S               
Sbjct: 113 MTTNIAESVNALFRHARKLPVTALLDHIRGKLQNWFYDRRTLAASRSTILSDYAENICQE 172

Query: 61  --------------------NP-SQWSKVYHVDSLINAYAQPIQPLGHESKWKRSPQFVD 100
                               NP S   + Y  +S I AYA+PI P+GH S W  SP+FV+
Sbjct: 173 FDYFKIPCSHAIAAAMMRNINPYSLCDEAYTTNSWILAYAEPIFPVGHVSTWNSSPEFVN 232

BLAST of Lag0034940 vs. NCBI nr
Match: XP_022144014.1 (uncharacterized protein LOC111013803 [Momordica charantia])

HSP 1 Score: 77.4 bits (189), Expect = 7.7e-11
Identity = 46/125 (36.80%), Postives = 66/125 (52.80%), Query Frame = 0

Query: 1   MSTNLAECTNSVLKDARELPITAFMNHIRG-----------------WLQAKYYK----- 60
           M+TN+AE  N++ +   +LP+TA ++HIRG                   +  Y+K     
Sbjct: 1   MTTNIAESVNALFRHVSKLPVTALLDHIRGTGRQPDEIVDLNAMTCSCREFDYFKIPCSH 60

Query: 61  ---RGNKHSSNP-SQWSKVYHVDSLINAYAQPIQPLGHESKWKRSPQFVDVEVLPPRRVS 100
              R    + NP S   + Y  +S I AYA+PI P+GH S W  SP+FV++ V PP+ V 
Sbjct: 61  AIVRAMMRNINPYSLCDEAYTTNSWILAYAEPIFPVGHVSTWNSSPEFVNIPVKPPKTVP 120

BLAST of Lag0034940 vs. NCBI nr
Match: KAA0061196.1 (MuDRA-like transposase [Cucumis melo var. makuwa] >TYK06248.1 MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 5.0e-10
Identity = 44/133 (33.08%), Postives = 70/133 (52.63%), Query Frame = 0

Query: 1   MSTNLAECTNSVLKDARELPITAFMNHIRGWLQAKYYKR---GNKHSSNPSQWSKV---- 60
           M+TN+AE  NS+LK+ R+L I +F+ H+R  LQ  +++R   G K +S  ++W+K+    
Sbjct: 147 MTTNIAESMNSILKEPRDLSIASFLEHVRALLQHWFWERREEGIKVTSTLTKWAKLVIQK 206

Query: 61  -----------------YHVDSL-----------INAYAQPIQPLGHESKWKRSPQFVDV 99
                            +  + L            NAYA+ + P+G++S WK S  +V +
Sbjct: 207 KQEGALTMKTKECTCKEFQAEQLPCSHAIAAARDCNAYAEAVYPVGNQSDWKTSEDYVHM 266

BLAST of Lag0034940 vs. NCBI nr
Match: XP_022156977.1 (uncharacterized protein LOC111023804 [Momordica charantia])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 47/150 (31.33%), Postives = 68/150 (45.33%), Query Frame = 0

Query: 1   MSTNLAECTNSVLKDARELPITAFMNHIRGWLQAKYYKRGNKH----------------- 60
           M+TN+AE  N++ + AR+LP+TA ++HIR  + A+Y     +H                 
Sbjct: 1   MTTNIAESVNALFRHARKLPVTALLDHIRENMYAEYSDSARRHIVDNIDQFHFQVRDDNL 60

Query: 61  ---------------------------------SSNP-SQWSKVYHVDSLINAYAQPIQP 100
                                            + NP S   + Y  +S I AYA+PI P
Sbjct: 61  DGIVDLNAMTCSCWEFDYFKIPCSHAIAAATMRNINPYSLCDEAYTTNSWILAYAEPIFP 120

BLAST of Lag0034940 vs. NCBI nr
Match: XP_022156122.1 (uncharacterized protein LOC111023087 [Momordica charantia])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 48/150 (32.00%), Postives = 70/150 (46.67%), Query Frame = 0

Query: 1   MSTNLAECTNSVLKDARELPITAFMNHIRGWLQAKYYKRGNKH----------------- 60
           M+TN+AE  N++ + AR+LP+TA ++HIR  + AK      +H                 
Sbjct: 244 MTTNIAESVNALFRHARKLPVTALLDHIREEMIAKASDNARRHIVMNIDQFNFEVRDGNL 303

Query: 61  ---------------------------------SSNP-SQWSKVYHVDSLINAYAQPIQP 100
                                            S NP +   +VY V+S + AYA+PI P
Sbjct: 304 NGDVDLQSQTCTCREFDYFKVSCSDAIAAASSRSINPYTLCDEVYTVNSWMLAYAEPIFP 363

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022151004.12.4e-1237.04uncharacterized protein LOC111019024 [Momordica charantia][more]
XP_022144014.17.7e-1136.80uncharacterized protein LOC111013803 [Momordica charantia][more]
KAA0061196.15.0e-1033.08MuDRA-like transposase [Cucumis melo var. makuwa] >TYK06248.1 MuDRA-like transpo... [more]
XP_022156977.11.1e-0931.33uncharacterized protein LOC111023804 [Momordica charantia][more]
XP_022156122.11.1e-0932.00uncharacterized protein LOC111023087 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0034940.1Lag0034940.1mRNA