Lag0034870 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0034870
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	CCHC-type domain-containing protein
Location	chr3: 11876996 .. 11882223 (-)
RNA-Seq Expression	Lag0034870
Synteny	Lag0034870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCAGGCCTACCTCTCAAAGTCCAAAAGGCTTCTGCAGAAGGATCATCACTTGAAGAATCTTCTTAAATGGTAAGAAAATGTTCTATGCTGCATGTAATGAGTTCATTTCAAGCTTTCTAAGTTTCTTGACTTTTTGCTTGCATTTCCTTGTTCAGTTATATTTGAAGCGTGACATCAACTTGGCAAGATCCTCAAACAGTTGAAATGAAATGCTAACCAGGTTCATATTCAGCTCATTTCTTGCCCCACCTTTTAGTTTTTATAACATGTCACCGGCAAGTTTTATTTATATGCTTCATGGAAGCATACGTGATGATGGTGGTTTGTTGGGTTATGAATGATGATACAGGATTACGTGCTCAGCCCTAGTAGCATCTCAATTTTTTTAACCATTTTAAACTTGTTAACCATGTTTTCTTCCATTCCTTTGGGTAAATCAATTTCAAAAGTGAGATAGATTGTAAATAGGTTTAAATTTTCATTTGGTCTCAAAACTTTCATGTGCACTCTATTTTGGTCCTTGGACTTTCAAAACTTATGCCTAAGTTAAACTTTACATAAAAAAAAAAAACTATTTTTAATATATGTTGTTAATTTTTTAAAAAATTATTTAACAAGCATTTGATATTGGCATTATTACTTACTTGACGAGTAGATGTTTGCATATATAAATATTTGCCACATGTTGTTAGGTTGAAAACATGTCTATCAAAGAAAGGACTAAAATAGTATTCATACAAAATCTAGGAACTAAAATAGAACATTAGTACTGTTACAAGTTTGAAGACCAAAATAAGATTTAAACCATATTATAAATGACTTTCTTTCCTCTTACTCATTGTGACCATAGAACCAGAAATTATTAAGAACCTTTGTTACCTTTCCTTTGACCTTTGTCTTATGCACATCATCTACTTCATCAATGTGATCATATACTCTTTTCCCAGACTTTGGAAATGGCCTGCCGATTGTTAAGGTTCCCACAGGAAGGAAGGGCTTCAAGATTCATGTTCTGAAAAATGATCTTGTGGTAACTGGTAAGGATGGCATTTCAAATTGGCTTCCCTATCATTTTCTGAGAGAACCAAAAAGAAAAGCTTTCTATCAATCCATGGTTTCATAACTGGGGCTGAGGGAATTTCTAGTGGAGTGGTAAAATGCACAGAGAACTATGAAGTTTACCACTGACAAAAGCATTCTGCTAGTTTGACACTGACTTTGAAAGATGAAAGCTAGAGAAGCGAATGAGATTAGATATCCCAAAAGTCCTAGCTATAAATGATGAGTATTAGGTGTTGCGCATATCGACATCGACTTGTATTTCGATGGATGAAAGATCGATGAAGGTGTTGAAATATGGATTTTGAAAAGCAAAAGGAGAGGAGATGGTTGGCCTTGGTTTCTCATCTGAGATCTCATGAAGATGATGAAAAACATCCCACAACCATTTAACATGAGGCAAGTTATTTCTTGCAAATCAACTGACAAGATGCATGGAACCATAAGTTCCAGTATGTTTACATGACTTTTGAGAATATTGTTACAGTTCCTTTTTTATGATGCAAGTTACTTAAAGTCAAATTAGAAGCCATTTTGTATCATATTTAAGGGATTTTTGTGTTTGAACTATGAAAAAAGTTACACAGGTTGGGGTTGTGATCGAGACAGGCTGGAGGTGTAGTCACAATTATAGTTTAAAAAGGTCTAAGTTGAATCCATATTTAAGATCATATTTTGAATATGAATGATGAATGTATAATTAATATTTTTTTTTAAATCAAATACAAGACAACAGTAGTAGGGATGTATAGAAAATTTCAAGAACAAGCAAGGGCATAAGAGTACCCTAATATAGATAATTTTTTTTTTTCTTCTCAAAATAAAATTTGAACTAAGGTTGGAGTTAGAGATGGAGGTAATAATAATCTTTTTTTTTTTTTTTTTTTTTTTAATAATCGAGATAAATGTAAGGATGAAGACATGAAATATAAAATAAAAACCAAATATTTTAATTTAGGATCAAACTCAACGTTGAAATTGATATATCAAAGGGTGTGATATTCATTATAGTAATTTTTTTTTTTTAAAAAAAAAGTTCAAGGTTTGAATTCATAGTGAGAGAGTTACCTCGCGCCTTTTCTACCCATCCATCCACGTCACTTTCAGGTACATACATTCTTTTGCTAAAAGCTGTTCAAACTCTTCCAAAGAACAGAGTGTGAGTTACTTTAGCATCGACGTACTCGAACACCAATTCAAACTACTTCACTATCTCCCAACTCAGAAATCGTTTTAAACGGAGATCCTTCACTCTCTTCAAATAGATTTCGAGTCAACCGAATCCAATCACAACGCTTGGCTAACTCGGAGGCATACCATATCAAATCAAAACATCGAACGCGTAATCGGCTGAGGAATTCGAGCGAGTGAAGATGGTAACATGACTTCTTTCTTTTCTTTGACAAAAAGGAAAAGAAATGGTAAGTAGAGAAGAGGAAGGATGTGTGATGTGTGATGTGTGATGTGTGAGAGTCCACGTGAACAGTTGTGGGCAGATTAGGAGACAGAAGGAATAAAGAACAATATTGAGTGTTGTCCTTTGGCTTTGGCCTTCATCTTAGGGTTTGGTTTTGGCTTTGTCTTTCTGTTGCAATTCACATGTCAAAGTCTCAAGTCTCTGACTGAAAAAGCAATGTCCCATTTGCTAAGAGTTGTGTGTGATTGCTTTCACCCATGCCAGACACCCATTATCACACTCAATGCCAACTTAGTATGTTTTAATCATCATTCCACTATTATTTTACCCTTTAATGTAGCGTCGGTCCGGAAACACTTTTCGTCTTTGTACTTTTGTTGAAGCAACGATTTAGTCATCGTAAGGTTTAGTATTCATAACGATTTAGTTTATGTATTTCCGAATTTGTTGTGTAGTTCGTGAAATTTGGTGTGTAGCTATTTAGTCTGTGTAGTTTGAAGTTTGTATTGGTTTAGTCTCTCTTGTGTAAAATGTTGTTAATTTGTAGTGGGGTTTCTTATGGTATGTGTAAAATGATAAATTACTTAAGGACCAAAGTTGTTTATAACGGCAAGAACTTAGTTGATATATAATAAAATTTGATATTTCACTTTGATGAGATTTTTCACGATAAGGACTAAATCATTACAAATTTTTAAATTACGACAGAGACTTATAAATTGTTACTTACTAAAGTTCAAGTTCTAAATTGTTATGAATTTGAAAGCACAATTTAGTTCCTATTGTTTAAAAAAAAAACCAATTTAATCTCTTACCTTTTAACAATTTTCATTTTTCAATTATATCCTTCTTGTTGGTAAATGTTGAAATTGACCTATGACAAGCTTATATAACATGATACTTAATAAACATACAGATATAGAAGTGGAGATTGACTACCAACTTCTTAAAAATTGGATTTTCTATCAACTTCTTAAATTTTTTTTTTTTTTTTGAATAGGTCAACTTCTTAAAAATTTGTCAAAGAAATTAAAAAAAAAAAAATCTCTCTAATAAGAATTTGAAATATGTCAAGGACTTGTAAAAAGGATATTTGAGAAATTTAATCAAGGTAAATGTTTTCTCATTTTTGGTACAATATATGCATTTTGCAGGCAAATGTAAATTTAATCAAGGATGACAATGTATGTAGGATCTATAAAGAGATTTCAAACACAATGAGGTCATGATGTTTGAAGTTAAAATATATAGTCATGAGTTAGAAGTTAAATTTTATCTAACTAAGTAAACTCAACTCAATATTATATGGGCTTCCATCTCAAAACCAATTGGTGGGTTCACCATTCTTGGATGGATTGGACCGAATACCCGTTTGGGGTTCTAATACCATATTATATTATATGAGCTTCCATCTCAAAACCAATTGGCAATGAGTAGAGTGACCATTGAAACTTATATATTGTGAGGTCTCCACCAATCTTTCCGATGTGGGATCCTCAACAAATATGACATGCTTATGAGTAATGAAACTACTTATTATTGTATATTTTTTAGACTCTCTTTAGTATAAATGCTTTTGTGGCCTTAATAATAAACAATATGAATACTGATGAATGGTGAATTTCGATAATAAAATTGAACTTACATAGTTAAGTAAATAGGCAAAATTGAATCTTTGTCTACATTTTTTTTTATTTCAACCTGTGGTGCGGTGATAACCCTCTTAATTAAAGGTATATGTCTTAAACAGTTGAGCTATACTCAAATTGACATTTTTGTTTTGTACTATTATCAAAACATTAAGGTATTAAAAAAATAATAAATAAAAAAATCTTCTATAAACTTTGTCTCCATATTTTTAATCTTATTCTATAAATTTATTGGGCCTTTTGAATATTGAATCACTTTTTTTATTTTACTATGGGTACTACATATATACAAATATCTAATAGACATTTGGAACGTAATAATTTGATTTCTCACTTTTTAAATTTGGTTTGCGATCATTATTAAACAAAGTAGTGTTAAAAACTTTGGTTTGATTAAATGAGTTTGTGCTATTTTAGTTGACAATCTACGTGTTAGGTTTTTGACAAAACATTGGAAGAGCACAAATCTCACATCTGAATGATATAAGAAAAGGATGAGTTTTAACTATTATAAAAGGAGTTTGTGGCTTTTGTTTCAAACCATCCCAATTAGAAACATTTTTTTTTTTTTTGTGGTAATTGAGATGAAAGAAAGAATGATGTGTGATTGTAACATTTTTCACTTTTTTTTTTTTTTTTTTTTTTGAGTTTTCACGTAAATTCTTGTGTTTCCTTATCATTGTTGTTATTTTCTTTCAATTCTCTCAGTTATTTTTTTGCTTATTCTTGTGGTAGAAGTAGTTTTTTTTTTCTTCCAAATAAGTGGTATGAGAACTTTTAGGTTCATAGTTTCTTGATTTCTAAGTATGCCCTGCAGTCTTTTGTCACTATTCACAAATTTGCTAAAAAGTAAAGTAGATATGTCAAATTTTATGAGCCTATTTAAGTTTGATGTAGAAATTTGATAGAAGGATCGACTTCGGCGTGTGGCAAGTGCAAGTCAAGGATGTGCTAATACAATCTGGGTTACATAAGGCCTCGGAGGGAAGACCAAGCAGTGGTGCTACTGAAGAGTTAACTGGTGGTGATGGTCCAATAAAGTCCAACGATGGTTCCAACAAAGGTCCTAAGAAGTCCATTATAAGCGATGAAGATTAA

mRNA sequence

ATGATGCAGGCCTACCTCTCAAAGTCCAAAAGGCTTCTGCAGAAGGATCATCACTTGAAGAATCTTCTTAAATGGTTCATATTCAGCTCATTTCTTGCCCCACCTTTTAGTTTTTATAACATGTCACCGGCAAGTTTTATTTATATGCTTCATGGAAGCATACGTGATGATGGTGACTTTGGAAATGGCCTGCCGATTGTTAAGGTTCCCACAGGAAGGAAGGGCTTCAAGATTCATGTTCTGAAAAATGATCTTGTGGCAAATGTAAATTTAATCAAGGATGACAATAAATTTGATAGAAGGATCGACTTCGGCGTGTGGCAAGTGCAAGTCAAGGATGTGCTAATACAATCTGGGTTACATAAGGCCTCGGAGGGAAGACCAAGCAGTGGTGCTACTGAAGAGTTAACTGGTGGTGATGGTCCAATAAAGTCCAACGATGGTTCCAACAAAGGTCCTAAGAAGTCCATTATAAGCGATGAAGATTAA

Coding sequence (CDS)

ATGATGCAGGCCTACCTCTCAAAGTCCAAAAGGCTTCTGCAGAAGGATCATCACTTGAAGAATCTTCTTAAATGGTTCATATTCAGCTCATTTCTTGCCCCACCTTTTAGTTTTTATAACATGTCACCGGCAAGTTTTATTTATATGCTTCATGGAAGCATACGTGATGATGGTGACTTTGGAAATGGCCTGCCGATTGTTAAGGTTCCCACAGGAAGGAAGGGCTTCAAGATTCATGTTCTGAAAAATGATCTTGTGGCAAATGTAAATTTAATCAAGGATGACAATAAATTTGATAGAAGGATCGACTTCGGCGTGTGGCAAGTGCAAGTCAAGGATGTGCTAATACAATCTGGGTTACATAAGGCCTCGGAGGGAAGACCAAGCAGTGGTGCTACTGAAGAGTTAACTGGTGGTGATGGTCCAATAAAGTCCAACGATGGTTCCAACAAAGGTCCTAAGAAGTCCATTATAAGCGATGAAGATTAA

Protein sequence

MMQAYLSKSKRLLQKDHHLKNLLKWFIFSSFLAPPFSFYNMSPASFIYMLHGSIRDDGDFGNGLPIVKVPTGRKGFKIHVLKNDLVANVNLIKDDNKFDRRIDFGVWQVQVKDVLIQSGLHKASEGRPSSGATEELTGGDGPIKSNDGSNKGPKKSIISDED

Homology

[Close]

BLAST of Lag0034870 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia])

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-12
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 94  DDNKFDRRIDFGVWQVQVKDVLIQSGLHKASEGRPSSGATEELTGGDGPIKSNDGSNKGP 153
           D  KFD  I+FG+WQVQVKDVLIQS LHKA +GRPS GA+E+L+   GP++S+ GS++G 
Sbjct: 305 DVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPMESSGGSSRGS 364

Query: 154 KKSIISDED 163
           KKS +S ED
Sbjct: 365 KKSSMSYED 373

[Close]

BLAST of Lag0034870 vs. NCBI nr
Match: XP_022154929.1 (uncharacterized protein LOC111022075 [Momordica charantia])

HSP 1 Score: 81.6 bits (200), Expect = 6.6e-12
Identity = 38/59 (64.41%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 94  DDNKFDRRIDFGVWQVQVKDVLIQSGLHKASEGRPSSGATEELTGGDGPIKSNDGSNKG 153
           D  KFD  I+FG+WQVQVKDV+IQSGLHKA +GRPS  A+E+L+G  GP++S+DGS++G
Sbjct: 155 DVEKFDEMINFGLWQVQVKDVMIQSGLHKALKGRPSEDASEKLSGDGGPMESSDGSDRG 213

[Close]

BLAST of Lag0034870 vs. NCBI nr
Match: PHT30042.1 (hypothetical protein CQW23_30347 [Capsicum baccatum])

HSP 1 Score: 65.5 bits (158), Expect = 4.9e-07
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 97  KFDRRIDFGVWQVQVKDVLIQSGLHKASEGRPSSGATEELTGGDGPIKSNDGSNKGPKKS 156
           KFD RI+FG+WQVQVKDVLIQSGLHKA + RP+S        GD   + ++ S+K  KKS
Sbjct: 9   KFDGRINFGLWQVQVKDVLIQSGLHKALKERPTS------EKGDKDSEKSE-SSKDSKKS 67

Query: 157 IISDED 163
           IISDE+
Sbjct: 69  IISDEE 67

[Close]

BLAST of Lag0034870 vs. NCBI nr
Match: PHT58503.1 (hypothetical protein CQW23_00866 [Capsicum baccatum])

HSP 1 Score: 62.8 bits (151), Expect = 3.2e-06
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 97  KFDRRIDFGVWQVQVKDVLIQSGLHKASEGRPSSGATEELTGGDGPIKSNDGSNKGPKKS 156
           KFD RI+FG+WQVQVKDVLIQSGLHK  + RP+SG       GD   + ++ S+K  +KS
Sbjct: 9   KFDGRINFGLWQVQVKDVLIQSGLHKVLKERPTSGK------GDKDSEKSE-SSKDSEKS 67

Query: 157 IISDED 163
            ISDE+
Sbjct: 69  RISDEE 67

[Close]

BLAST of Lag0034870 vs. NCBI nr
Match: KAF3648859.1 (hypothetical protein FXO37_19241 [Capsicum annuum] >PHT69902.1 hypothetical protein T459_25006 [Capsicum annuum])

HSP 1 Score: 62.8 bits (151), Expect = 3.2e-06
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 97  KFDRRIDFGVWQVQVKDVLIQSGLHKASEGRPSSGATEELTGGDGPIKSNDGSNKGPKKS 156
           KFD RI+FG+WQVQVKDVLIQSGLHKA + RP+SG       GD   K  + S++  +KS
Sbjct: 255 KFDGRINFGLWQVQVKDVLIQSGLHKALKERPTSGK------GDKDSKKFE-SSEDSEKS 313

Query: 157 IISDED 163
            ISDE+
Sbjct: 315 RISDEE 313

The following BLAST results are available for this feature:

BLAST of Lag0034870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139673.1	1.0e-12	62.32	uncharacterized protein LOC111010521 [Momordica charantia]	[more]
XP_022154929.1	6.6e-12	64.41	uncharacterized protein LOC111022075 [Momordica charantia]	[more]
PHT30042.1	4.9e-07	59.09	hypothetical protein CQW23_30347 [Capsicum baccatum]	[more]
PHT58503.1	3.2e-06	56.06	hypothetical protein CQW23_00866 [Capsicum baccatum]	[more]
KAF3648859.1	3.2e-06	57.58	hypothetical protein FXO37_19241 [Capsicum annuum] >PHT69902.1 hypothetical prot...	[more]

BLAST of Lag0034870 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0034870.1	Lag0034870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034645	cellular macromolecule biosynthetic process
biological_process	GO:0044271	cellular nitrogen compound biosynthetic process
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0010467	gene expression
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0006979	response to oxidative stress
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0020037	heme binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004601	peroxidase activity
molecular_function	GO:0008270	zinc ion binding