Lag0034860 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0034860
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Histone H3
Location	chr3: 11752151 .. 11752561 (+)
RNA-Seq Expression	Lag0034860
Synteny	Lag0034860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGAACGAAGCAAACAGCAAGGAAATCGACGGGAGGGAAGGCGCCGAGGAAGCAGCTGGCAACGAAGGCAGCGAGAAAGTCGGCTCCGGCGACCGGAGGAGTGAAGAAGCCGCACAGATTCAGGCCGGGAACGGTGGCGCTGAGGGAGATCAGGAAGTACCAGAAGAGCACCGAGCTTCTGATCAGGAAGCTTCCGTTTCAGCGGCTGGTGAGGGAGATCGCTCAGGACTTCAAGACCGATTTTCGGTTTCAAAGCAGCGCCGTCGCGGCTCTTCAGGAGGCCGCCGAGGCGTACCTGGTAGGGCTCTTCGAGGACACGAATCTGTGCGCTATTCATGCTAAGAGGGTTACTATTATGCCTAAGGATATCCAGCTTGCTAGGAGAATTAGAGGCGAGAGGGCTTAA

mRNA sequence

ATGGCAAGAACGAAGCAAACAGCAAGGAAATCGACGGGAGGGAAGGCGCCGAGGAAGCAGCTGGCAACGAAGGCAGCGAGAAAGTCGGCTCCGGCGACCGGAGGAGTGAAGAAGCCGCACAGATTCAGGCCGGGAACGGTGGCGCTGAGGGAGATCAGGAAGTACCAGAAGAGCACCGAGCTTCTGATCAGGAAGCTTCCGTTTCAGCGGCTGGTGAGGGAGATCGCTCAGGACTTCAAGACCGATTTTCGGTTTCAAAGCAGCGCCGTCGCGGCTCTTCAGGAGGCCGCCGAGGCGTACCTGGTAGGGCTCTTCGAGGACACGAATCTGTGCGCTATTCATGCTAAGAGGGTTACTATTATGCCTAAGGATATCCAGCTTGCTAGGAGAATTAGAGGCGAGAGGGCTTAA

Coding sequence (CDS)

ATGGCAAGAACGAAGCAAACAGCAAGGAAATCGACGGGAGGGAAGGCGCCGAGGAAGCAGCTGGCAACGAAGGCAGCGAGAAAGTCGGCTCCGGCGACCGGAGGAGTGAAGAAGCCGCACAGATTCAGGCCGGGAACGGTGGCGCTGAGGGAGATCAGGAAGTACCAGAAGAGCACCGAGCTTCTGATCAGGAAGCTTCCGTTTCAGCGGCTGGTGAGGGAGATCGCTCAGGACTTCAAGACCGATTTTCGGTTTCAAAGCAGCGCCGTCGCGGCTCTTCAGGAGGCCGCCGAGGCGTACCTGGTAGGGCTCTTCGAGGACACGAATCTGTGCGCTATTCATGCTAAGAGGGTTACTATTATGCCTAAGGATATCCAGCTTGCTAGGAGAATTAGAGGCGAGAGGGCTTAA

Protein sequence

MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDFRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

Homology

[Close]

BLAST of Lag0034860 vs. NCBI nr
Match: EOY31042.1 (Histone superfamily protein [Theobroma cacao])

HSP 1 Score: 251.9 bits (642), Expect = 3.1e-63
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 85  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 144

Query: 61  LLIRKLPFQRLVREIAQDFKTDFRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTD RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 145 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 204

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 205 MPKDIQLARRIRGERA 220

[Close]

BLAST of Lag0034860 vs. NCBI nr
Match: XP_030970207.1 (uncharacterized protein LOC115990517 [Quercus lobata])

HSP 1 Score: 251.9 bits (642), Expect = 3.1e-63
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 244 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 303

Query: 61  LLIRKLPFQRLVREIAQDFKTDFRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTD RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 304 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 363

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 364 MPKDIQLARRIRGERA 379

[Close]

BLAST of Lag0034860 vs. NCBI nr
Match: XP_018474324.1 (PREDICTED: histone H3-like centromeric protein CSE4 [Raphanus sativus])

HSP 1 Score: 251.9 bits (642), Expect = 3.1e-63
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 162 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 221

Query: 61  LLIRKLPFQRLVREIAQDFKTDFRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTD RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 222 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 281

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 282 MPKDIQLARRIRGERA 297

[Close]

BLAST of Lag0034860 vs. NCBI nr
Match: XP_016690064.1 (histone H3.2 [Gossypium hirsutum])

HSP 1 Score: 251.9 bits (642), Expect = 3.1e-63
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 31  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 90

Query: 61  LLIRKLPFQRLVREIAQDFKTDFRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTD RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 91  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 150

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 151 MPKDIQLARRIRGERA 166

[Close]

BLAST of Lag0034860 vs. NCBI nr
Match: XP_022154562.1 (uncharacterized protein LOC111021800 [Momordica charantia])

HSP 1 Score: 251.9 bits (642), Expect = 3.1e-63
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 223 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 282

Query: 61  LLIRKLPFQRLVREIAQDFKTDFRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTD RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 283 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 342

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 343 MPKDIQLARRIRGERA 358

[Close]

BLAST of Lag0034860 vs. ExPASy Swiss-Prot
Match: P59226 (Histone H3.2 OS=Arabidopsis thaliana OX=3702 GN=HTR2 PE=1 SV=2)

HSP 1 Score: 251.9 bits (642), Expect = 4.1e-66
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDFRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTD RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lag0034860 vs. ExPASy Swiss-Prot
Match: Q6LBE3 (Histone H3.2 OS=Asparagus officinalis OX=4686 PE=2 SV=3)

HSP 1 Score: 251.9 bits (642), Expect = 4.1e-66
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDFRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTD RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lag0034860 vs. ExPASy Swiss-Prot
Match: Q6LCK1 (Histone H3.2 OS=Brassica napus OX=3708 PE=2 SV=3)

HSP 1 Score: 251.9 bits (642), Expect = 4.1e-66
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDFRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTD RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lag0034860 vs. ExPASy Swiss-Prot
Match: Q71T45 (Histone H3.2 OS=Euphorbia esula OX=3993 GN=H3 PE=2 SV=3)

HSP 1 Score: 251.9 bits (642), Expect = 4.1e-66
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDFRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTD RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lag0034860 vs. ExPASy Swiss-Prot
Match: P69246 (Histone H3.2 OS=Zea mays OX=4577 GN=H3C2 PE=1 SV=2)

HSP 1 Score: 251.9 bits (642), Expect = 4.1e-66
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDFRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTD RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of Lag0034860 vs. NCBI nr


Match Name	E-value	Identity	Description
EOY31042.1	3.1e-63	99.26	Histone superfamily protein [Theobroma cacao]	[more]
XP_030970207.1	3.1e-63	99.26	uncharacterized protein LOC115990517 [Quercus lobata]	[more]
XP_018474324.1	3.1e-63	99.26	PREDICTED: histone H3-like centromeric protein CSE4 [Raphanus sativus]	[more]
XP_016690064.1	3.1e-63	99.26	histone H3.2 [Gossypium hirsutum]	[more]
XP_022154562.1	3.1e-63	99.26	uncharacterized protein LOC111021800 [Momordica charantia]	[more]

BLAST of Lag0034860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P59226	4.1e-66	99.26	Histone H3.2 OS=Arabidopsis thaliana OX=3702 GN=HTR2 PE=1 SV=2	[more]
Q6LBE3	4.1e-66	99.26	Histone H3.2 OS=Asparagus officinalis OX=4686 PE=2 SV=3	[more]
Q6LCK1	4.1e-66	99.26	Histone H3.2 OS=Brassica napus OX=3708 PE=2 SV=3	[more]
Q71T45	4.1e-66	99.26	Histone H3.2 OS=Euphorbia esula OX=3993 GN=H3 PE=2 SV=3	[more]
P69246	4.1e-66	99.26	Histone H3.2 OS=Zea mays OX=4577 GN=H3C2 PE=1 SV=2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000164	Histone H3/CENP-A	PRINTS	PR00622	HISTONEH3	coord: 114..135 score: 94.86 coord: 98..114 score: 96.93 coord: 34..55 score: 89.33 coord: 3..17 score: 97.1 coord: 17..31 score: 92.32 coord: 80..98 score: 79.98 coord: 58..75 score: 97.46
IPR000164	Histone H3/CENP-A	SMART	SM00428	h35	coord: 34..136 e-value: 7.9E-74 score: 261.3
IPR000164	Histone H3/CENP-A	PANTHER	PTHR11426	HISTONE H3	coord: 1..136
IPR000164	Histone H3/CENP-A	PROSITE	PS00959	HISTONE_H3_2	coord: 67..75
IPR000164	Histone H3/CENP-A	PROSITE	PS00322	HISTONE_H3_1	coord: 15..21
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 1..132 e-value: 1.6E-53 score: 180.5
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..136 e-value: 1.5E-75 score: 253.5
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 2..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	PANTHER	PTHR11426:SF198	SUBFAMILY NOT NAMED	coord: 1..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0034860.1	Lag0034860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0010369	chromocenter
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity