Lag0034754 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0034754
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr3: 10454504 .. 10454812 (-)
RNA-Seq Expression	Lag0034754
Synteny	Lag0034754

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACATTGATGCTTCGTGGCTTAAAGATCGAAAAGTGGGAGGGATTGGTTGGATAGTTCGTGACTCTTCAGGATTTCTGATTGGAATCGACAGCAAACACATGACAATAAATTGGGGGATCAAGAACCTTGAAGCGAATGCAATTCTAAAGGGGGCGAAAGCTTATCTTAATTGGTGCTCCCGCTATTTCAGTGGTTTCAAGTCTCCTTTGGCGGTAGAGACAGATGCGCATGTTGTGGTCAGGGCCATCTCCAGCGAGGCGATCAATCTCTCGGAGCTATCCATGATTACCTCTACCATCCGTTAA

mRNA sequence

ATGAACATTGATGCTTCGTGGCTTAAAGATCGAAAAGTGGGAGGGATTGGTTGGATAGTTCGTGACTCTTCAGGATTTCTGATTGGAATCGACAGCAAACACATGACAATAAATTGGGGGATCAAGAACCTTGAAGCGAATGCAATTCTAAAGGGGGCGAAAGCTTATCTTAATTGGTGCTCCCGCTATTTCAGTGGTTTCAAGTCTCCTTTGGCGGTAGAGACAGATGCGCATGTTGTGGTCAGGGCCATCTCCAGCGAGGCGATCAATCTCTCGGAGCTATCCATGATTACCTCTACCATCCGTTAA

Coding sequence (CDS)

ATGAACATTGATGCTTCGTGGCTTAAAGATCGAAAAGTGGGAGGGATTGGTTGGATAGTTCGTGACTCTTCAGGATTTCTGATTGGAATCGACAGCAAACACATGACAATAAATTGGGGGATCAAGAACCTTGAAGCGAATGCAATTCTAAAGGGGGCGAAAGCTTATCTTAATTGGTGCTCCCGCTATTTCAGTGGTTTCAAGTCTCCTTTGGCGGTAGAGACAGATGCGCATGTTGTGGTCAGGGCCATCTCCAGCGAGGCGATCAATCTCTCGGAGCTATCCATGATTACCTCTACCATCCGTTAA

Protein sequence

MNIDASWLKDRKVGGIGWIVRDSSGFLIGIDSKHMTINWGIKNLEANAILKGAKAYLNWCSRYFSGFKSPLAVETDAHVVVRAISSEAINLSELSMITSTIR

Homology

[Close]

BLAST of Lag0034754 vs. NCBI nr
Match: XP_013632606.1 (PREDICTED: uncharacterized protein LOC106338098 [Brassica oleracea var. oleracea])

HSP 1 Score: 55.1 bits (131), Expect = 4.2e-04
Identity = 28/87 (32.18%), Postives = 46/87 (52.87%), Query Frame = 0


Query: 2   NIDASWLKDRKVGGIGWIVRDSSGFLIGIDSKHMTINWGIKNLEANAILKGAKAYLNWCS 61
           N DASW K+  +GG+GWI+RD  G L+   ++ + +   +   EA AI        +W  
Sbjct: 148 NTDASWSKETMIGGVGWILRDHQGLLLWAGARKLPMMRSVIETEAEAI--------SWAI 207

Query: 62  RYFSGF-KSPLAVETDAHVVVRAISSE 88
           +   GF    + +ETD+ V+ R ++ E
Sbjct: 208 QTLVGFGYKTVIIETDSLVLARMLNGE 226

[Close]

BLAST of Lag0034754 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 55.1 bits (131), Expect = 4.2e-04
Identity = 31/92 (33.70%), Postives = 54/92 (58.70%), Query Frame = 0


Query: 1   MNIDASWLKDRKVGGIGWIVRDSSGFLIGIDSKHMTINWGIKNLEANAILKGAKAYLNWC 60
           +N DASW ++R+VGGIGWI+ D  G ++   +  +     I  LE   I++G + ++N  
Sbjct: 115 LNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQ-FINMQ 174

Query: 61  SRYFSGFKSPLAVETDAHVVVRAISSEAINLS 93
           SR      SP+ +E+D+  V+R +  E ++L+
Sbjct: 175 SR------SPIYLESDSVEVIRLMKKEDVDLT 199

[Close]

BLAST of Lag0034754 vs. NCBI nr
Match: XP_013694754.1 (uncharacterized protein LOC106398790 [Brassica napus])

HSP 1 Score: 54.3 bits (129), Expect = 7.2e-04
Identity = 26/87 (29.89%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 2   NIDASWLKDRKVGGIGWIVRDSSGFLIGIDSKHMTINWGIKNLEANAILKGAKAYLNWCS 61
           N DA+W+++ +VGG+GW++RD +G ++   +K +     +   E  A        L W  
Sbjct: 148 NTDATWMQETEVGGVGWVLRDHNGDMLWAGAKRLPDMGSVHETEMEA--------LRWAI 207

Query: 62  RYFSGF-KSPLAVETDAHVVVRAISSE 88
           R  +GF    +  E+D+ V+VR +++E
Sbjct: 208 RTLAGFGYRNVTFESDSQVLVRMLNNE 226

[Close]

BLAST of Lag0034754 vs. NCBI nr
Match: KAG6599977.1 (hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 53.9 bits (128), Expect = 9.3e-04
Identity = 22/57 (38.60%), Postives = 34/57 (59.65%), Query Frame = 0


Query: 1  MNIDASWLKDRKVGGIGWIVRDSSGFLIGIDSKHMTINWGIKNLEANAILKGAKAYL 58
          +N  ASW ++   GG+ W++ DS G  I I+ K +   W +K LE  A+++G K YL
Sbjct: 8  LNSYASWSEEAGKGGVSWVIHDSLGSSICIECKELRRKWLVKMLEGKAMIEGLKTYL 64

The following BLAST results are available for this feature:

BLAST of Lag0034754 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_013632606.1	4.2e-04	32.18	PREDICTED: uncharacterized protein LOC106338098 [Brassica oleracea var. oleracea...	[more]
XP_022143317.1	4.2e-04	33.70	uncharacterized protein LOC111013216 [Momordica charantia]	[more]
XP_013694754.1	7.2e-04	29.89	uncharacterized protein LOC106398790 [Brassica napus]	[more]
KAG6599977.1	9.3e-04	38.60	hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0034754 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 2..102 e-value: 5.2E-9 score: 36.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0034754.1	Lag0034754.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity