Lag0034714 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0034714
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Mediator of RNA polymerase II transcription subunit 13
Location	chr3: 10099406 .. 10100182 (-)
RNA-Seq Expression	Lag0034714
Synteny	Lag0034714

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTTCTCAGTTGTAAACTAAGAAAGTACATTGCAATAGCTGTCATATGGCATGTCTATCATTTGAAATATCCTGAGTTCCTTGAGCTGCGTGGAGAAATATTTGTGCAATGTATTTCAGGTTTTGCAGCAGTAATTTTTCTCAGTACTTACCTAAAGTCTTTTACAGGTGGAAATCAAAGCAGTGTACATACAGGTCCGTCCGTGTATCTTGAAGGCTTCACCCCTGTTAAATCTCTTGGTTCCACATCTTCTTCTTACATACTAATCCCATCACCTAGTCTGCGTTTCCTTCCTTCAAACCCTCTTCAGCTTCCCACATGCCTCACTGCCGAATCTCCACCTTTAGCACATCTCCTCCACAGCAAGGGCTCAGCAATTCCACTTTCCACTGGATTTGCCATTTCAAGAGCTGTGCCCTCAATGAGAAAGGATTCTCGGAGCAACATGAAAGAGGAATGGCCATCAGCCCTTTCGGTTAGTCTCATCGATTATTACGGAAATAATATCACACAAGAAAAGAATGTCCGCGGTATCAAGCAAGTGGGAAGAAGTTCAAGCGTGGAATCTAGAGACTTCGAAATAGAGACACATTTGATCCTTGAGTCTGTCATAGCAGAGCTTCATGCCTTATCATGGATGACTGTAAGCCCAGCGTACTTGGACCGACGAACTGCCCTGCCTTTTCACTGTGATATGGTTTTGAGACTCAGGAGGATTCTTCATTTTGCTGACACAGAGCTTTCTAGGCGTGCAGAGAAATCCAAACATTAG

mRNA sequence

ATGAAATTTCTCAGTTGTAAACTAAGAAAGTACATTGCAATAGCTGTCATATGGCATGTCTATCATTTGAAATATCCTGAGTTCCTTGAGCTGCGTGGAGAAATATTTGTGCAATGTATTTCAGGTTTTGCAGCAGTAATTTTTCTCAGTACTTACCTAAAGTCTTTTACAGGTGGAAATCAAAGCAGTGTACATACAGGTCCGTCCGTGTATCTTGAAGGCTTCACCCCTGTTAAATCTCTTGGTTCCACATCTTCTTCTTACATACTAATCCCATCACCTAGTCTGCGTTTCCTTCCTTCAAACCCTCTTCAGCTTCCCACATGCCTCACTGCCGAATCTCCACCTTTAGCACATCTCCTCCACAGCAAGGGCTCAGCAATTCCACTTTCCACTGGATTTGCCATTTCAAGAGCTGTGCCCTCAATGAGAAAGGATTCTCGGAGCAACATGAAAGAGGAATGGCCATCAGCCCTTTCGGTTAGTCTCATCGATTATTACGGAAATAATATCACACAAGAAAAGAATGTCCGCGGTATCAAGCAAGTGGGAAGAAGTTCAAGCGTGGAATCTAGAGACTTCGAAATAGAGACACATTTGATCCTTGAGTCTGTCATAGCAGAGCTTCATGCCTTATCATGGATGACTGTAAGCCCAGCGTACTTGGACCGACGAACTGCCCTGCCTTTTCACTGTGATATGGTTTTGAGACTCAGGAGGATTCTTCATTTTGCTGACACAGAGCTTTCTAGGCGTGCAGAGAAATCCAAACATTAG

Coding sequence (CDS)

ATGAAATTTCTCAGTTGTAAACTAAGAAAGTACATTGCAATAGCTGTCATATGGCATGTCTATCATTTGAAATATCCTGAGTTCCTTGAGCTGCGTGGAGAAATATTTGTGCAATGTATTTCAGGTTTTGCAGCAGTAATTTTTCTCAGTACTTACCTAAAGTCTTTTACAGGTGGAAATCAAAGCAGTGTACATACAGGTCCGTCCGTGTATCTTGAAGGCTTCACCCCTGTTAAATCTCTTGGTTCCACATCTTCTTCTTACATACTAATCCCATCACCTAGTCTGCGTTTCCTTCCTTCAAACCCTCTTCAGCTTCCCACATGCCTCACTGCCGAATCTCCACCTTTAGCACATCTCCTCCACAGCAAGGGCTCAGCAATTCCACTTTCCACTGGATTTGCCATTTCAAGAGCTGTGCCCTCAATGAGAAAGGATTCTCGGAGCAACATGAAAGAGGAATGGCCATCAGCCCTTTCGGTTAGTCTCATCGATTATTACGGAAATAATATCACACAAGAAAAGAATGTCCGCGGTATCAAGCAAGTGGGAAGAAGTTCAAGCGTGGAATCTAGAGACTTCGAAATAGAGACACATTTGATCCTTGAGTCTGTCATAGCAGAGCTTCATGCCTTATCATGGATGACTGTAAGCCCAGCGTACTTGGACCGACGAACTGCCCTGCCTTTTCACTGTGATATGGTTTTGAGACTCAGGAGGATTCTTCATTTTGCTGACACAGAGCTTTCTAGGCGTGCAGAGAAATCCAAACATTAG

Protein sequence

MKFLSCKLRKYIAIAVIWHVYHLKYPEFLELRGEIFVQCISGFAAVIFLSTYLKSFTGGNQSSVHTGPSVYLEGFTPVKSLGSTSSSYILIPSPSLRFLPSNPLQLPTCLTAESPPLAHLLHSKGSAIPLSTGFAISRAVPSMRKDSRSNMKEEWPSALSVSLIDYYGNNITQEKNVRGIKQVGRSSSVESRDFEIETHLILESVIAELHALSWMTVSPAYLDRRTALPFHCDMVLRLRRILHFADTELSRRAEKSKH

Homology

[Close]

BLAST of Lag0034714 vs. NCBI nr
Match: KAA0055718.1 (mediator of RNA polymerase II transcription subunit 13 [Cucumis melo var. makuwa])

HSP 1 Score: 397.5 bits (1020), Expect = 8.7e-107
Identity = 203/217 (93.55%), Postives = 210/217 (96.77%), Query Frame = 0


Query: 42   GFAAVIFLSTYLKSFTGGNQSSVHTGPSVYLEGFTPVKSLGSTSSSYILIPSPSLRFLPS 101
            GFAAV FLST LKS TGGNQ SVHTG S+Y+EGFTPVKSLGSTSSSYILIPSPSLRFLPS
Sbjct: 1382 GFAAVTFLSTNLKSLTGGNQGSVHTGSSMYIEGFTPVKSLGSTSSSYILIPSPSLRFLPS 1441

Query: 102  NPLQLPTCLTAESPPLAHLLHSKGSAIPLSTGFAISRAVPSMRKDSRSNMKEEWPSALSV 161
            NPLQLPTCLTAESPPLAHLLHSKGSA+PLSTGFAISRAVPSMRKD+RSNMKEEWPS LSV
Sbjct: 1442 NPLQLPTCLTAESPPLAHLLHSKGSAVPLSTGFAISRAVPSMRKDTRSNMKEEWPSVLSV 1501

Query: 162  SLIDYYGNNITQEKNVRG-IKQVGRSSSVESRDFEIETHLILESVIAELHALSWMTVSPA 221
            SLIDYYGNNITQEKNVRG IKQVGRSS+VESRDFEIETHLILES+IAELHALSWMTVSPA
Sbjct: 1502 SLIDYYGNNITQEKNVRGIIKQVGRSSTVESRDFEIETHLILESIIAELHALSWMTVSPA 1561

Query: 222  YLDRRTALPFHCDMVLRLRRILHFADTELSRRAEKSK 258
            YLDRRTALPFHCDMVLRLRRILHFADTELSRRAEK+K
Sbjct: 1562 YLDRRTALPFHCDMVLRLRRILHFADTELSRRAEKTK 1598

[Close]

BLAST of Lag0034714 vs. NCBI nr
Match: TYK09965.1 (mediator of RNA polymerase II transcription subunit 13 [Cucumis melo var. makuwa])

HSP 1 Score: 397.5 bits (1020), Expect = 8.7e-107
Identity = 203/217 (93.55%), Postives = 210/217 (96.77%), Query Frame = 0


Query: 42   GFAAVIFLSTYLKSFTGGNQSSVHTGPSVYLEGFTPVKSLGSTSSSYILIPSPSLRFLPS 101
            GFAAV FLST LKS TGGNQ SVHTG S+Y+EGFTPVKSLGSTSSSYILIPSPSLRFLPS
Sbjct: 1355 GFAAVTFLSTNLKSLTGGNQGSVHTGSSMYIEGFTPVKSLGSTSSSYILIPSPSLRFLPS 1414

Query: 102  NPLQLPTCLTAESPPLAHLLHSKGSAIPLSTGFAISRAVPSMRKDSRSNMKEEWPSALSV 161
            NPLQLPTCLTAESPPLAHLLHSKGSA+PLSTGFAISRAVPSMRKD+RSNMKEEWPS LSV
Sbjct: 1415 NPLQLPTCLTAESPPLAHLLHSKGSAVPLSTGFAISRAVPSMRKDTRSNMKEEWPSVLSV 1474

Query: 162  SLIDYYGNNITQEKNVRG-IKQVGRSSSVESRDFEIETHLILESVIAELHALSWMTVSPA 221
            SLIDYYGNNITQEKNVRG IKQVGRSS+VESRDFEIETHLILES+IAELHALSWMTVSPA
Sbjct: 1475 SLIDYYGNNITQEKNVRGIIKQVGRSSTVESRDFEIETHLILESIIAELHALSWMTVSPA 1534

Query: 222  YLDRRTALPFHCDMVLRLRRILHFADTELSRRAEKSK 258
            YLDRRTALPFHCDMVLRLRRILHFADTELSRRAEK+K
Sbjct: 1535 YLDRRTALPFHCDMVLRLRRILHFADTELSRRAEKTK 1571

[Close]

BLAST of Lag0034714 vs. NCBI nr
Match: XP_031737595.1 (mediator of RNA polymerase II transcription subunit 13 isoform X2 [Cucumis sativus])

HSP 1 Score: 376.7 bits (966), Expect = 1.6e-100
Identity = 191/201 (95.02%), Postives = 197/201 (98.01%), Query Frame = 0


Query: 58   GGNQSSVHTGPSVYLEGFTPVKSLGSTSSSYILIPSPSLRFLPSNPLQLPTCLTAESPPL 117
            GGNQ SVHTG S+Y+EGFTPVKSLGSTSSSYILIPSPSLRFLPSNPLQLPTCLTAESPPL
Sbjct: 1747 GGNQGSVHTGSSMYIEGFTPVKSLGSTSSSYILIPSPSLRFLPSNPLQLPTCLTAESPPL 1806

Query: 118  AHLLHSKGSAIPLSTGFAISRAVPSMRKDSRSNMKEEWPSALSVSLIDYYGNNITQEKNV 177
            AHLLHSKGSA+PLSTGFAISRAVPSMRKDSRSNMKEEWPS LSVSLIDYYGNNITQEKNV
Sbjct: 1807 AHLLHSKGSAVPLSTGFAISRAVPSMRKDSRSNMKEEWPSVLSVSLIDYYGNNITQEKNV 1866

Query: 178  RG-IKQVGRSSSVESRDFEIETHLILESVIAELHALSWMTVSPAYLDRRTALPFHCDMVL 237
            RG IKQVGRSS+VESRDFEIETHLILES+IAELHALSWMTVSPAYLDRRTALPFHCDMVL
Sbjct: 1867 RGVIKQVGRSSTVESRDFEIETHLILESIIAELHALSWMTVSPAYLDRRTALPFHCDMVL 1926

Query: 238  RLRRILHFADTELSRRAEKSK 258
            RLRRILHFADTELSRRAEK+K
Sbjct: 1927 RLRRILHFADTELSRRAEKTK 1947

[Close]

BLAST of Lag0034714 vs. NCBI nr
Match: XP_011660061.1 (mediator of RNA polymerase II transcription subunit 13 isoform X1 [Cucumis sativus] >XP_031737593.1 mediator of RNA polymerase II transcription subunit 13 isoform X1 [Cucumis sativus] >KAE8653472.1 hypothetical protein Csa_007029 [Cucumis sativus])

HSP 1 Score: 376.7 bits (966), Expect = 1.6e-100
Identity = 191/201 (95.02%), Postives = 197/201 (98.01%), Query Frame = 0


Query: 58   GGNQSSVHTGPSVYLEGFTPVKSLGSTSSSYILIPSPSLRFLPSNPLQLPTCLTAESPPL 117
            GGNQ SVHTG S+Y+EGFTPVKSLGSTSSSYILIPSPSLRFLPSNPLQLPTCLTAESPPL
Sbjct: 1750 GGNQGSVHTGSSMYIEGFTPVKSLGSTSSSYILIPSPSLRFLPSNPLQLPTCLTAESPPL 1809

Query: 118  AHLLHSKGSAIPLSTGFAISRAVPSMRKDSRSNMKEEWPSALSVSLIDYYGNNITQEKNV 177
            AHLLHSKGSA+PLSTGFAISRAVPSMRKDSRSNMKEEWPS LSVSLIDYYGNNITQEKNV
Sbjct: 1810 AHLLHSKGSAVPLSTGFAISRAVPSMRKDSRSNMKEEWPSVLSVSLIDYYGNNITQEKNV 1869

Query: 178  RG-IKQVGRSSSVESRDFEIETHLILESVIAELHALSWMTVSPAYLDRRTALPFHCDMVL 237
            RG IKQVGRSS+VESRDFEIETHLILES+IAELHALSWMTVSPAYLDRRTALPFHCDMVL
Sbjct: 1870 RGVIKQVGRSSTVESRDFEIETHLILESIIAELHALSWMTVSPAYLDRRTALPFHCDMVL 1929

Query: 238  RLRRILHFADTELSRRAEKSK 258
            RLRRILHFADTELSRRAEK+K
Sbjct: 1930 RLRRILHFADTELSRRAEKTK 1950

[Close]

BLAST of Lag0034714 vs. NCBI nr
Match: XP_008451019.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 13 [Cucumis melo])

HSP 1 Score: 375.6 bits (963), Expect = 3.5e-100
Identity = 190/201 (94.53%), Postives = 197/201 (98.01%), Query Frame = 0


Query: 58   GGNQSSVHTGPSVYLEGFTPVKSLGSTSSSYILIPSPSLRFLPSNPLQLPTCLTAESPPL 117
            GGNQ SVHTG S+Y+EGFTPVKSLGSTSSSYILIPSPSLRFLPSNPLQLPTCLTAESPPL
Sbjct: 1749 GGNQGSVHTGSSMYIEGFTPVKSLGSTSSSYILIPSPSLRFLPSNPLQLPTCLTAESPPL 1808

Query: 118  AHLLHSKGSAIPLSTGFAISRAVPSMRKDSRSNMKEEWPSALSVSLIDYYGNNITQEKNV 177
            AHLLHSKGSA+PLSTGFAISRAVPSMRKD+RSNMKEEWPS LSVSLIDYYGNNITQEKNV
Sbjct: 1809 AHLLHSKGSAVPLSTGFAISRAVPSMRKDTRSNMKEEWPSVLSVSLIDYYGNNITQEKNV 1868

Query: 178  RG-IKQVGRSSSVESRDFEIETHLILESVIAELHALSWMTVSPAYLDRRTALPFHCDMVL 237
            RG IKQVGRSS+VESRDFEIETHLILES+IAELHALSWMTVSPAYLDRRTALPFHCDMVL
Sbjct: 1869 RGIIKQVGRSSTVESRDFEIETHLILESIIAELHALSWMTVSPAYLDRRTALPFHCDMVL 1928

Query: 238  RLRRILHFADTELSRRAEKSK 258
            RLRRILHFADTELSRRAEK+K
Sbjct: 1929 RLRRILHFADTELSRRAEKTK 1949

[Close]

BLAST of Lag0034714 vs. ExPASy Swiss-Prot
Match: F4I096 (Mediator of RNA polymerase II transcription subunit 13 OS=Arabidopsis thaliana OX=3702 GN=MED13 PE=1 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 8.3e-76
Identity = 145/200 (72.50%), Postives = 169/200 (84.50%), Query Frame = 0


Query: 58   GGNQSSVHTGPSVYLEGFTPVKSLGSTSSSYILIPSPSLRFLPSNPLQLPTCLTAESPPL 117
            GG QSS       Y+EGFTPVKSLGST+ SY++IPSP++RFL  +PLQLPTCLTAESPPL
Sbjct: 1721 GGGQSSTGMSSVNYIEGFTPVKSLGSTAFSYMMIPSPNMRFLHPSPLQLPTCLTAESPPL 1780

Query: 118  AHLLHSKGSAIPLSTGFAISRAVPSMRKDSRSNMKEEWPSALSVSLIDYYGN-NITQEKN 177
            AHLLHSKG AIPLSTGF +S+AVPSMRKDSR N+KEEWPS LSVSLIDYYG  +   +K 
Sbjct: 1781 AHLLHSKGYAIPLSTGFVVSKAVPSMRKDSRINVKEEWPSVLSVSLIDYYGGYDNAHDKI 1840

Query: 178  VRGIKQVGRSSSVESRDFEIETHLILESVIAELHALSWMTVSPAYLDRRTALPFHCDMVL 237
            ++GI + G   + E+RDFE+E+HLILES+ AELHALSWMTVSPAYLDRRTALPFHCDMVL
Sbjct: 1841 LQGIVKQG-GGTKETRDFEVESHLILESIAAELHALSWMTVSPAYLDRRTALPFHCDMVL 1900

Query: 238  RLRRILHFADTELSRRAEKS 257
            RLRR+LHFAD E+SR  +K+
Sbjct: 1901 RLRRLLHFADKEVSRIPDKT 1919

[Close]

BLAST of Lag0034714 vs. ExPASy TrEMBL
Match: A0A0A0M2D5 (Mediator of RNA polymerase II transcription subunit 13 OS=Cucumis sativus OX=3659 GN=Csa_1G599542 PE=3 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.9e-107
Identity = 204/217 (94.01%), Postives = 210/217 (96.77%), Query Frame = 0


Query: 42   GFAAVIFLSTYLKSFTGGNQSSVHTGPSVYLEGFTPVKSLGSTSSSYILIPSPSLRFLPS 101
            GFAAV FLST LKS TGGNQ SVHTG S+Y+EGFTPVKSLGSTSSSYILIPSPSLRFLPS
Sbjct: 1297 GFAAVTFLSTNLKSLTGGNQGSVHTGSSMYIEGFTPVKSLGSTSSSYILIPSPSLRFLPS 1356

Query: 102  NPLQLPTCLTAESPPLAHLLHSKGSAIPLSTGFAISRAVPSMRKDSRSNMKEEWPSALSV 161
            NPLQLPTCLTAESPPLAHLLHSKGSA+PLSTGFAISRAVPSMRKDSRSNMKEEWPS LSV
Sbjct: 1357 NPLQLPTCLTAESPPLAHLLHSKGSAVPLSTGFAISRAVPSMRKDSRSNMKEEWPSVLSV 1416

Query: 162  SLIDYYGNNITQEKNVRG-IKQVGRSSSVESRDFEIETHLILESVIAELHALSWMTVSPA 221
            SLIDYYGNNITQEKNVRG IKQVGRSS+VESRDFEIETHLILES+IAELHALSWMTVSPA
Sbjct: 1417 SLIDYYGNNITQEKNVRGVIKQVGRSSTVESRDFEIETHLILESIIAELHALSWMTVSPA 1476

Query: 222  YLDRRTALPFHCDMVLRLRRILHFADTELSRRAEKSK 258
            YLDRRTALPFHCDMVLRLRRILHFADTELSRRAEK+K
Sbjct: 1477 YLDRRTALPFHCDMVLRLRRILHFADTELSRRAEKTK 1513

[Close]

BLAST of Lag0034714 vs. ExPASy TrEMBL
Match: A0A5A7UKX2 (Mediator of RNA polymerase II transcription subunit 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G001000 PE=3 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 4.2e-107
Identity = 203/217 (93.55%), Postives = 210/217 (96.77%), Query Frame = 0


Query: 42   GFAAVIFLSTYLKSFTGGNQSSVHTGPSVYLEGFTPVKSLGSTSSSYILIPSPSLRFLPS 101
            GFAAV FLST LKS TGGNQ SVHTG S+Y+EGFTPVKSLGSTSSSYILIPSPSLRFLPS
Sbjct: 1382 GFAAVTFLSTNLKSLTGGNQGSVHTGSSMYIEGFTPVKSLGSTSSSYILIPSPSLRFLPS 1441

Query: 102  NPLQLPTCLTAESPPLAHLLHSKGSAIPLSTGFAISRAVPSMRKDSRSNMKEEWPSALSV 161
            NPLQLPTCLTAESPPLAHLLHSKGSA+PLSTGFAISRAVPSMRKD+RSNMKEEWPS LSV
Sbjct: 1442 NPLQLPTCLTAESPPLAHLLHSKGSAVPLSTGFAISRAVPSMRKDTRSNMKEEWPSVLSV 1501

Query: 162  SLIDYYGNNITQEKNVRG-IKQVGRSSSVESRDFEIETHLILESVIAELHALSWMTVSPA 221
            SLIDYYGNNITQEKNVRG IKQVGRSS+VESRDFEIETHLILES+IAELHALSWMTVSPA
Sbjct: 1502 SLIDYYGNNITQEKNVRGIIKQVGRSSTVESRDFEIETHLILESIIAELHALSWMTVSPA 1561

Query: 222  YLDRRTALPFHCDMVLRLRRILHFADTELSRRAEKSK 258
            YLDRRTALPFHCDMVLRLRRILHFADTELSRRAEK+K
Sbjct: 1562 YLDRRTALPFHCDMVLRLRRILHFADTELSRRAEKTK 1598

[Close]

BLAST of Lag0034714 vs. ExPASy TrEMBL
Match: A0A5D3CEL2 (Mediator of RNA polymerase II transcription subunit 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00940 PE=3 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 4.2e-107
Identity = 203/217 (93.55%), Postives = 210/217 (96.77%), Query Frame = 0


Query: 42   GFAAVIFLSTYLKSFTGGNQSSVHTGPSVYLEGFTPVKSLGSTSSSYILIPSPSLRFLPS 101
            GFAAV FLST LKS TGGNQ SVHTG S+Y+EGFTPVKSLGSTSSSYILIPSPSLRFLPS
Sbjct: 1355 GFAAVTFLSTNLKSLTGGNQGSVHTGSSMYIEGFTPVKSLGSTSSSYILIPSPSLRFLPS 1414

Query: 102  NPLQLPTCLTAESPPLAHLLHSKGSAIPLSTGFAISRAVPSMRKDSRSNMKEEWPSALSV 161
            NPLQLPTCLTAESPPLAHLLHSKGSA+PLSTGFAISRAVPSMRKD+RSNMKEEWPS LSV
Sbjct: 1415 NPLQLPTCLTAESPPLAHLLHSKGSAVPLSTGFAISRAVPSMRKDTRSNMKEEWPSVLSV 1474

Query: 162  SLIDYYGNNITQEKNVRG-IKQVGRSSSVESRDFEIETHLILESVIAELHALSWMTVSPA 221
            SLIDYYGNNITQEKNVRG IKQVGRSS+VESRDFEIETHLILES+IAELHALSWMTVSPA
Sbjct: 1475 SLIDYYGNNITQEKNVRGIIKQVGRSSTVESRDFEIETHLILESIIAELHALSWMTVSPA 1534

Query: 222  YLDRRTALPFHCDMVLRLRRILHFADTELSRRAEKSK 258
            YLDRRTALPFHCDMVLRLRRILHFADTELSRRAEK+K
Sbjct: 1535 YLDRRTALPFHCDMVLRLRRILHFADTELSRRAEKTK 1571

[Close]

BLAST of Lag0034714 vs. ExPASy TrEMBL
Match: A0A1S3BQJ3 (Mediator of RNA polymerase II transcription subunit 13 OS=Cucumis melo OX=3656 GN=LOC103492426 PE=3 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.7e-100
Identity = 190/201 (94.53%), Postives = 197/201 (98.01%), Query Frame = 0


Query: 58   GGNQSSVHTGPSVYLEGFTPVKSLGSTSSSYILIPSPSLRFLPSNPLQLPTCLTAESPPL 117
            GGNQ SVHTG S+Y+EGFTPVKSLGSTSSSYILIPSPSLRFLPSNPLQLPTCLTAESPPL
Sbjct: 1749 GGNQGSVHTGSSMYIEGFTPVKSLGSTSSSYILIPSPSLRFLPSNPLQLPTCLTAESPPL 1808

Query: 118  AHLLHSKGSAIPLSTGFAISRAVPSMRKDSRSNMKEEWPSALSVSLIDYYGNNITQEKNV 177
            AHLLHSKGSA+PLSTGFAISRAVPSMRKD+RSNMKEEWPS LSVSLIDYYGNNITQEKNV
Sbjct: 1809 AHLLHSKGSAVPLSTGFAISRAVPSMRKDTRSNMKEEWPSVLSVSLIDYYGNNITQEKNV 1868

Query: 178  RG-IKQVGRSSSVESRDFEIETHLILESVIAELHALSWMTVSPAYLDRRTALPFHCDMVL 237
            RG IKQVGRSS+VESRDFEIETHLILES+IAELHALSWMTVSPAYLDRRTALPFHCDMVL
Sbjct: 1869 RGIIKQVGRSSTVESRDFEIETHLILESIIAELHALSWMTVSPAYLDRRTALPFHCDMVL 1928

Query: 238  RLRRILHFADTELSRRAEKSK 258
            RLRRILHFADTELSRRAEK+K
Sbjct: 1929 RLRRILHFADTELSRRAEKTK 1949

[Close]

BLAST of Lag0034714 vs. ExPASy TrEMBL
Match: A0A6J1D1E1 (Mediator of RNA polymerase II transcription subunit 13 OS=Momordica charantia OX=3673 GN=LOC111016463 PE=3 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 6.5e-100
Identity = 193/203 (95.07%), Postives = 196/203 (96.55%), Query Frame = 0


Query: 58   GGNQSSVHTGPSVYLEGFTPVKSLGSTSSSYILIPSPSLRFLPSNPLQLPTCLTAESPPL 117
            GGNQ S++TGPS YLEGFTPVKSLGSTSSSYI IPSPSL FLPSNPLQLPTCLTAESPPL
Sbjct: 1746 GGNQGSLNTGPSAYLEGFTPVKSLGSTSSSYIFIPSPSLHFLPSNPLQLPTCLTAESPPL 1805

Query: 118  AHLLHSKGSAIPLSTGFAISRAVPSMRKDSRSNMKEEWPSALSVSLIDYY-GNNITQEKN 177
            AHLLHSKGSAIPLSTGFAISRAVPSMRKDSRSNMKEEWPSALSVSLIDYY GNN+ QEKN
Sbjct: 1806 AHLLHSKGSAIPLSTGFAISRAVPSMRKDSRSNMKEEWPSALSVSLIDYYGGNNVAQEKN 1865

Query: 178  VRG-IKQVGRSSSVESRDFEIETHLILESVIAELHALSWMTVSPAYLDRRTALPFHCDMV 237
            VRG IKQVGRSSSVESRDFEIETHLILESVIAELHALSWMTVSPAYLDRRTALPFHCDMV
Sbjct: 1866 VRGVIKQVGRSSSVESRDFEIETHLILESVIAELHALSWMTVSPAYLDRRTALPFHCDMV 1925

Query: 238  LRLRRILHFADTELSRRAEKSKH 259
            LRLRRILHFADTELSRRAEKSKH
Sbjct: 1926 LRLRRILHFADTELSRRAEKSKH 1948

[Close]

BLAST of Lag0034714 vs. TAIR 10
Match: AT1G55325.1 (RNA polymerase II transcription mediators )

HSP 1 Score: 285.0 bits (728), Expect = 5.9e-77
Identity = 145/200 (72.50%), Postives = 169/200 (84.50%), Query Frame = 0


Query: 58   GGNQSSVHTGPSVYLEGFTPVKSLGSTSSSYILIPSPSLRFLPSNPLQLPTCLTAESPPL 117
            GG QSS       Y+EGFTPVKSLGST+ SY++IPSP++RFL  +PLQLPTCLTAESPPL
Sbjct: 1721 GGGQSSTGMSSVNYIEGFTPVKSLGSTAFSYMMIPSPNMRFLHPSPLQLPTCLTAESPPL 1780

Query: 118  AHLLHSKGSAIPLSTGFAISRAVPSMRKDSRSNMKEEWPSALSVSLIDYYGN-NITQEKN 177
            AHLLHSKG AIPLSTGF +S+AVPSMRKDSR N+KEEWPS LSVSLIDYYG  +   +K 
Sbjct: 1781 AHLLHSKGYAIPLSTGFVVSKAVPSMRKDSRINVKEEWPSVLSVSLIDYYGGYDNAHDKI 1840

Query: 178  VRGIKQVGRSSSVESRDFEIETHLILESVIAELHALSWMTVSPAYLDRRTALPFHCDMVL 237
            ++GI + G   + E+RDFE+E+HLILES+ AELHALSWMTVSPAYLDRRTALPFHCDMVL
Sbjct: 1841 LQGIVKQG-GGTKETRDFEVESHLILESIAAELHALSWMTVSPAYLDRRTALPFHCDMVL 1900

Query: 238  RLRRILHFADTELSRRAEKS 257
            RLRR+LHFAD E+SR  +K+
Sbjct: 1901 RLRRLLHFADKEVSRIPDKT 1919

[Close]

BLAST of Lag0034714 vs. TAIR 10
Match: AT1G55325.2 (RNA polymerase II transcription mediators )

HSP 1 Score: 285.0 bits (728), Expect = 5.9e-77
Identity = 145/200 (72.50%), Postives = 169/200 (84.50%), Query Frame = 0


Query: 58   GGNQSSVHTGPSVYLEGFTPVKSLGSTSSSYILIPSPSLRFLPSNPLQLPTCLTAESPPL 117
            GG QSS       Y+EGFTPVKSLGST+ SY++IPSP++RFL  +PLQLPTCLTAESPPL
Sbjct: 1706 GGGQSSTGMSSVNYIEGFTPVKSLGSTAFSYMMIPSPNMRFLHPSPLQLPTCLTAESPPL 1765

Query: 118  AHLLHSKGSAIPLSTGFAISRAVPSMRKDSRSNMKEEWPSALSVSLIDYYGN-NITQEKN 177
            AHLLHSKG AIPLSTGF +S+AVPSMRKDSR N+KEEWPS LSVSLIDYYG  +   +K 
Sbjct: 1766 AHLLHSKGYAIPLSTGFVVSKAVPSMRKDSRINVKEEWPSVLSVSLIDYYGGYDNAHDKI 1825

Query: 178  VRGIKQVGRSSSVESRDFEIETHLILESVIAELHALSWMTVSPAYLDRRTALPFHCDMVL 237
            ++GI + G   + E+RDFE+E+HLILES+ AELHALSWMTVSPAYLDRRTALPFHCDMVL
Sbjct: 1826 LQGIVKQG-GGTKETRDFEVESHLILESIAAELHALSWMTVSPAYLDRRTALPFHCDMVL 1885

Query: 238  RLRRILHFADTELSRRAEKS 257
            RLRR+LHFAD E+SR  +K+
Sbjct: 1886 RLRRLLHFADKEVSRIPDKT 1904

The following BLAST results are available for this feature:

BLAST of Lag0034714 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055718.1	8.7e-107	93.55	mediator of RNA polymerase II transcription subunit 13 [Cucumis melo var. makuwa...	[more]
TYK09965.1	8.7e-107	93.55	mediator of RNA polymerase II transcription subunit 13 [Cucumis melo var. makuwa...	[more]
XP_031737595.1	1.6e-100	95.02	mediator of RNA polymerase II transcription subunit 13 isoform X2 [Cucumis sativ...	[more]
XP_011660061.1	1.6e-100	95.02	mediator of RNA polymerase II transcription subunit 13 isoform X1 [Cucumis sativ...	[more]
XP_008451019.1	3.5e-100	94.53	PREDICTED: mediator of RNA polymerase II transcription subunit 13 [Cucumis melo]	[more]

BLAST of Lag0034714 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I096	8.3e-76	72.50	Mediator of RNA polymerase II transcription subunit 13 OS=Arabidopsis thaliana O...	[more]

BLAST of Lag0034714 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M2D5	1.9e-107	94.01	Mediator of RNA polymerase II transcription subunit 13 OS=Cucumis sativus OX=365...	[more]
A0A5A7UKX2	4.2e-107	93.55	Mediator of RNA polymerase II transcription subunit 13 OS=Cucumis melo var. maku...	[more]
A0A5D3CEL2	4.2e-107	93.55	Mediator of RNA polymerase II transcription subunit 13 OS=Cucumis melo var. maku...	[more]
A0A1S3BQJ3	1.7e-100	94.53	Mediator of RNA polymerase II transcription subunit 13 OS=Cucumis melo OX=3656 G...	[more]
A0A6J1D1E1	6.5e-100	95.07	Mediator of RNA polymerase II transcription subunit 13 OS=Momordica charantia OX...	[more]

BLAST of Lag0034714 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55325.1	5.9e-77	72.50	RNA polymerase II transcription mediators	[more]
AT1G55325.2	5.9e-77	72.50	RNA polymerase II transcription mediators	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009401	Mediator complex subunit Med13, C-terminal	PFAM	PF06333	Med13_C	coord: 118..235 e-value: 7.3E-7 score: 28.8
None	No IPR available	PANTHER	PTHR10791:SF162	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13	coord: 68..249
None	No IPR available	PANTHER	PTHR10791	RAG1-ACTIVATING PROTEIN 1	coord: 68..249

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0034714.1	Lag0034714.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity