Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCTGAATCTATTTGGAATATCAAAGATCGATGGCTTTGTATTTATAATAATGTTTCTTCACAGACCCCAGAGCGGATATGTATGGTTGCATGGGCTATTTGGAACAACCGTAATAATATAATTCATCAAAGGCCAGTCCCTCCTGTGGGGGTTTTCTGTGAATGGATTCAGGACTATCTCTTTGAATACCACAGATTAGGTTATAAGCGTGGTCGTATGGTTCAATCTTTGGAGAATGTATCGAACATGATCGCTGGAGAGGACGAGATGATTTTGCATGTTGACGCGACATTTGATGAAGAGTCTCGACGTTGTGGAGTGAGGGCAGTTATCAGAACAAGGGAAGGTAAATTTATGTTTATTTTGCATAAAGGTTTCCTTTTGTTCTCTTCCCCTTTATGCGCCGAGGCGGTGGCGGATTTGGAGGGTGTTAAATTGTCAGCTCAACAGAATTTTAAGAAAGTGTCGGTCTTCTCAGATTCTCTATCACTAATCCCTATTCTTCTTCATGGTAAGCAGTGTCAAGCAGATTGTCTCAACACGGTTACGGATATCCAATATTTAAGGAACACTTTCCAGAAGATGAACTTTTGTCATGTCAATCGTGAGTAG
mRNA sequence
ATGGGAGCTGAATCTATTTGGAATATCAAAGATCGATGGCTTTGTATTTATAATAATGTTTCTTCACAGACCCCAGAGCGGATATGTATGGTTGCATGGGCTATTTGGAACAACCGTAATAATATAATTCATCAAAGGCCAGTCCCTCCTGTGGGGGTTTTCTGTGAATGGATTCAGGACTATCTCTTTGAATACCACAGATTAGGTTATAAGCGTGGTCGTATGGTTCAATCTTTGGAGAATGTATCGAACATGATCGCTGGAGAGGACGAGATGATTTTGCATGTTGACGCGACATTTGATGAAGAGTCTCGACGTTGTGGAGTGAGGGCAGTTATCAGAACAAGGGAAGGTAAATTTATGTTTATTTTGCATAAAGGTTTCCTTTTGTTCTCTTCCCCTTTATGCGCCGAGGCGGTGGCGGATTTGGAGGGTGTTAAATTGTCAGCTCAACAGAATTTTAAGAAAGTGTCGGTCTTCTCAGATTCTCTATCACTAATCCCTATTCTTCTTCATGGTAAGCAGTGTCAAGCAGATTGTCTCAACACGGTTACGGATATCCAATATTTAAGGAACACTTTCCAGAAGATGAACTTTTGTCATGTCAATCGTGAGTAG
Coding sequence (CDS)
ATGGGAGCTGAATCTATTTGGAATATCAAAGATCGATGGCTTTGTATTTATAATAATGTTTCTTCACAGACCCCAGAGCGGATATGTATGGTTGCATGGGCTATTTGGAACAACCGTAATAATATAATTCATCAAAGGCCAGTCCCTCCTGTGGGGGTTTTCTGTGAATGGATTCAGGACTATCTCTTTGAATACCACAGATTAGGTTATAAGCGTGGTCGTATGGTTCAATCTTTGGAGAATGTATCGAACATGATCGCTGGAGAGGACGAGATGATTTTGCATGTTGACGCGACATTTGATGAAGAGTCTCGACGTTGTGGAGTGAGGGCAGTTATCAGAACAAGGGAAGGTAAATTTATGTTTATTTTGCATAAAGGTTTCCTTTTGTTCTCTTCCCCTTTATGCGCCGAGGCGGTGGCGGATTTGGAGGGTGTTAAATTGTCAGCTCAACAGAATTTTAAGAAAGTGTCGGTCTTCTCAGATTCTCTATCACTAATCCCTATTCTTCTTCATGGTAAGCAGTGTCAAGCAGATTGTCTCAACACGGTTACGGATATCCAATATTTAAGGAACACTTTCCAGAAGATGAACTTTTGTCATGTCAATCGTGAGTAG
Protein sequence
MGAESIWNIKDRWLCIYNNVSSQTPERICMVAWAIWNNRNNIIHQRPVPPVGVFCEWIQDYLFEYHRLGYKRGRMVQSLENVSNMIAGEDEMILHVDATFDEESRRCGVRAVIRTREGKFMFILHKGFLLFSSPLCAEAVADLEGVKLSAQQNFKKVSVFSDSLSLIPILLHGKQCQADCLNTVTDIQYLRNTFQKMNFCHVNRE
Homology
BLAST of Lag0034692 vs. NCBI nr
Match:
XP_012487919.1 (PREDICTED: uncharacterized protein LOC105801131 [Gossypium raimondii])
HSP 1 Score: 85.1 bits (209), Expect = 7.6e-13
Identity = 52/194 (26.80%), Postives = 94/194 (48.45%), Query Frame = 0
Query: 13 WLCIYNNVSSQTPERI-CMVAWAIWNNRNNIIHQRPVPPVGVFCEWIQDYLFEYHRLGYK 72
WL + +S++ RI C WAIW +RNN +H + ++ Y+ E +G
Sbjct: 45 WLTGVFSKNSESQCRIFCYALWAIWGDRNNKVHNKVSKSGKEIGRFVSSYITELDGIGKS 104
Query: 73 RGRMVQSLENVSNMIAGEDEMI-LHVDATFDEESRRCGVRAVIRTREGKFMFILHKGFLL 132
+ QS + S D+++ ++ DA +D +S++ V R EGK + +
Sbjct: 105 K---AQSYKLTSKWKKPHDQIVKINFDAAYDGKSKQSAAGIVTRNNEGKVLLSCLMIYQQ 164
Query: 133 FSSPLCAEAVADLEGVKLSAQQNFKKVSVFSDSLSLIPILLHGKQCQADCLNTVTDIQYL 192
+SP AEA+A + +K+ + ++K+ + DSLS+I ++ ++DI L
Sbjct: 165 VASPFAAEALASRKAIKIGKEMKWRKIIIEGDSLSIIKKCRSNIPDKSQVCAYISDIHKL 224
Query: 193 RNTFQKMNFCHVNR 205
++ FQ+ F HV R
Sbjct: 225 QSRFQECRFEHVPR 235
BLAST of Lag0034692 vs. NCBI nr
Match:
MBA0701905.1 (hypothetical protein [Gossypium aridum])
HSP 1 Score: 84.7 bits (208), Expect = 9.9e-13
Identity = 49/194 (25.26%), Postives = 91/194 (46.91%), Query Frame = 0
Query: 13 WLC-IYNNVSSQTPERICMVAWAIWNNRNNIIHQRPVPPVGVFCEWIQDYLFEYHRLGYK 72
WL ++ S + C WAIW +RNN +H + ++ Y+ E +G
Sbjct: 184 WLTEVFVKNSESQCKMFCCSLWAIWGDRNNRVHNKVSKSGKEISRFVSSYIQELDGIGKS 243
Query: 73 RGRMVQSLENVSNMIAGEDEMI-LHVDATFDEESRRCGVRAVIRTREGKFMFILHKGFLL 132
+ V+S ++ S D+++ ++ DA +DE+S+ V R E K + +
Sbjct: 244 K---VESYKSTSKWKKPPDQIVKINFDAAYDEKSKESAAGIVARNNESKVLLSCSMIYKH 303
Query: 133 FSSPLCAEAVADLEGVKLSAQQNFKKVSVFSDSLSLIPILLHGKQCQADCLNTVTDIQYL 192
+SP AE +A + +K + ++K+ + DSLS+I ++ ++DI L
Sbjct: 304 VASPFAAETLASRKAIKTGKEMKWRKIIIEGDSLSIIKKCRSNIPVKSKVCTYISDIHKL 363
Query: 193 RNTFQKMNFCHVNR 205
+++FQ+ F HV R
Sbjct: 364 QSSFQECRFEHVPR 374
BLAST of Lag0034692 vs. NCBI nr
Match:
XP_030975730.1 (uncharacterized protein LOC115995344 [Quercus lobata])
HSP 1 Score: 78.6 bits (192), Expect = 7.1e-11
Identity = 53/194 (27.32%), Postives = 90/194 (46.39%), Query Frame = 0
Query: 15 CIYNNVSSQTPERICMVAWAIWNNRNNIIHQRPVPPVGVFCEWIQDYLFEYHRLGYKR-- 74
C++ ++ P MVAWAIWN RNN+ +P P+ QD + E+ +
Sbjct: 58 CVF--ADNRDPTLFSMVAWAIWNRRNNLRLGKPAAPLNELIPQAQDRMREFKLYNFSTII 117
Query: 75 --GRMVQSLENVSNMIAGEDEMILHVDATFDEESRRCGVRAVIRTREGKFMFILHKGFLL 134
GR S + S+ I ++ D G+ VIR EG+ M L + L
Sbjct: 118 PVGRPPTSWQAPSSNI-----YKVNFDGAQFVVENSAGLGVVIRNSEGQVMLSLSEKTPL 177
Query: 135 FSSPLCAEAVADLEGVKLSAQQNFKKVSVFSDSLSLIPILLHGKQCQADCLNTVTDIQYL 194
+ + EA+A +KL+ + F+++++ DS LI L++ + + + DIQ+L
Sbjct: 178 PFTAIEVEAMAARRALKLALETGFQQITLEGDSQILISALVNNTHSLSSFGHILKDIQFL 237
Query: 195 RNTFQKMNFCHVNR 205
+ F +N+ HV R
Sbjct: 238 ASCFSTINYSHVRR 244
BLAST of Lag0034692 vs. NCBI nr
Match:
KAG8478291.1 (hypothetical protein CXB51_028103 [Gossypium anomalum])
HSP 1 Score: 78.6 bits (192), Expect = 7.1e-11
Identity = 47/189 (24.87%), Postives = 92/189 (48.68%), Query Frame = 0
Query: 17 YNNVSSQTPERICMVAWAIWNNRNNIIHQRPVPPVGVFCEWIQDYLFEYHRLGYKRGRMV 76
+N+++++ + + W IW N+N I H+ V +++ Y E + R V
Sbjct: 3 FNSLNNKERKIRVIAYWVIWYNQNKIYHEGAREQVNEVVSFVKAYCLEITAMEVTM-RSV 62
Query: 77 QSLENVSNMIAGEDEMILHVDATFDEESRRCGVRAVIRTREGKFMFILHKGFLLFSSPLC 136
Q + N G D + ++ DATF++ +RR + R ++G M + S P+
Sbjct: 63 QVVGNYDWSPPGNDTIKINFDATFNQHTRRSNSGVIARNKDGLVMAACTFLWAYISGPVM 122
Query: 137 AEAVADLEGVKLSAQQNFKKVSVFSDSLSLIPILLHGKQCQADCLNTVTDIQYLRNTFQK 196
AEA A L+ V ++ + F + + DSL++I L ++ +++ + V +I+ F+
Sbjct: 123 AEARACLQVVSMAEEMGFHDICIKGDSLTIIRKLNTAEEDKSEISSLVKEIKGRAYIFRS 182
Query: 197 MNFCHVNRE 206
+ F H+ RE
Sbjct: 183 VRFRHIPRE 190
BLAST of Lag0034692 vs. NCBI nr
Match:
XP_030969948.1 (uncharacterized protein LOC115990241 [Quercus lobata])
HSP 1 Score: 77.8 bits (190), Expect = 1.2e-10
Identity = 49/176 (27.84%), Postives = 81/176 (46.02%), Query Frame = 0
Query: 30 MVAWAIWNNRNNIIHQRPVPPVGVFCEWIQDYLFEYHRLGYKRGRMVQSLENVSNMIAGE 89
MV WA+WN RNN+ + P+ + + + +L ++ R V S G
Sbjct: 1 MVVWALWNRRNNLRLGKKAEPLNILMQKAKPHLGDFQHYNTARVEPV-GRPPTSWQPPGP 60
Query: 90 DEMILHVDATFDEESRRCGVRAVIRTREGKFMFILHKGFLLFSSPLCAEAVADLEGVKLS 149
+ +++D E G R VIR G+ M L + L SS L EA+A G++L
Sbjct: 61 FQYKVNMDGALFEADNTAGPRVVIRNEHGQVMASLSERIRLPSSVLEVEALAARRGLELV 120
Query: 150 AQQNFKKVSVFSDSLSLIPILLHGKQCQADCLNTVTDIQYLRNTFQKMNFCHVNRE 206
+ F+ + + SDS LI L G + + V DI+++ + +N+ HV R+
Sbjct: 121 VETGFRNIVLESDSQILITTLREGSYSLSSFGHIVQDIKFIASYVSSINYTHVRRQ 175
BLAST of Lag0034692 vs. ExPASy TrEMBL
Match:
A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)
HSP 1 Score: 76.3 bits (186), Expect = 1.7e-10
Identity = 55/210 (26.19%), Postives = 90/210 (42.86%), Query Frame = 0
Query: 1 MGAESIWNIKDRWLCIYNNVSSQTPERICMVAWAIWNNRNNIIHQRPVPPVGVFCEWIQD 60
+ AE + + W + + + + W IWN+RN++IH + V PV CEW+
Sbjct: 1207 LSAEDNISFLELWSSLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTP 1266
Query: 61 YLFEYHRLGYKRGRMVQSLENVSNMI-----AGEDEMILHVDATFDEESRRCGVRAVIRT 120
+L + H ++ N ++ + + L+ DA S G +IR
Sbjct: 1267 FL-DSHSQAQMSNYSPRTQSNHRPVVQYWRPSSSVSLKLNTDAACRGASTSFG--CIIRD 1326
Query: 121 REGKFMFILHKGFLLFSSPLCAEAVADLEGVKLSAQQNFKKVSVFSDSLSLIPILLHGKQ 180
+ SPL AE LEG+K +A NF + V SDSL I ++ +
Sbjct: 1327 SSCSLVAATSIRVPFPLSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIH 1386
Query: 181 CQADCLNTVTDIQYLRNTFQKMNFCHVNRE 206
+ D N V +IQ L F ++F H +R+
Sbjct: 1387 TRGDEQNWVMEIQALTCCFAFISFSHSSRQ 1413
BLAST of Lag0034692 vs. ExPASy TrEMBL
Match:
A0A5B6VK73 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_015215 PE=4 SV=1)
HSP 1 Score: 75.9 bits (185), Expect = 2.2e-10
Identity = 48/190 (25.26%), Postives = 86/190 (45.26%), Query Frame = 0
Query: 16 IYNNVSSQTPERICMVAWAIWNNRNNIIHQRPVPPVGVFCEWIQDYLFEYHRLGYKRGRM 75
++ S+Q I WA+W +RN +IH+R + +I DYL E G +
Sbjct: 47 LFERESNQRIRTIVCAIWALWTDRNKLIHERKMQTSANLTHFIIDYLRELD--GVNKRLP 106
Query: 76 VQSLENVSNMIAGEDEMILHVDATFDEESRRCGVRAVIRTREGKFMFILHKGFLLFSSPL 135
+ L N S + + ++ DA FD++ +R VIR G+ + H S
Sbjct: 107 ISKLVNESWRPPEDINVKINFDAAFDKQHKRSCTEIVIRNSSGQVLKTKH-----IPSTF 166
Query: 136 CAEAVADLEGVKLSAQQNFKKVSVFSDSLSLIPILLHGKQCQADCLNTVTDIQYLRNTFQ 195
AEA+ ++ V+ A+ F +V V +LS+I +L +++ + + D + L++ F
Sbjct: 167 AAEALVCVQAVRFGAESGFLRVEVEGGTLSVIKKILCEDDDRSEIRSYILDAKRLKSNFI 226
Query: 196 KMNFCHVNRE 206
H R+
Sbjct: 227 NCRLKHEGRQ 229
BLAST of Lag0034692 vs. ExPASy TrEMBL
Match:
A0A2P5EP22 (Ribonuclease H-like domain containing protein OS=Trema orientale OX=63057 GN=TorRG33x02_169220 PE=4 SV=1)
HSP 1 Score: 71.2 bits (173), Expect = 5.5e-09
Identity = 48/168 (28.57%), Postives = 79/168 (47.02%), Query Frame = 0
Query: 26 ERICMVAWAIWNNRNNIIHQRPVPPVGVFCEWIQDYLFEYHRLGYKRGRMVQSLENVSNM 85
E C++ WAIWN RN+++H + +W+Q +LFE+ G K V S+ N+
Sbjct: 22 EVFCVLLWAIWNRRNDVLHNQNSKEAAALLDWVQSFLFEFQD-GLKIVN-VYSICQGRNL 81
Query: 86 I----AGEDEMILHVDATFDEESRRCGVRAVIRTREGKFMFILHKGFLLFSSPLCAEAVA 145
+ + L+VDA ++S GV IR EG + + + + +E +A
Sbjct: 82 VKWCKPSSGSLKLNVDAAVIKDSGVIGVGGAIRDLEGLVLACWSLQLVGYFDIVTSELLA 141
Query: 146 DLEGVKLSAQQNFKKVSVFSDSLSLIPILLHGKQCQADCLNTVTDIQY 190
EGV+L+ + S+ SDSLS + + C A + V DI +
Sbjct: 142 IREGVRLAVEFGCPLASIESDSLSAVQAISSPSPCFAGA-SIVNDILF 186
BLAST of Lag0034692 vs. ExPASy TrEMBL
Match:
A0A1U8JJX9 (uncharacterized protein LOC107907782 OS=Gossypium hirsutum OX=3635 GN=LOC107907782 PE=4 SV=1)
HSP 1 Score: 70.5 bits (171), Expect = 9.4e-09
Identity = 51/206 (24.76%), Postives = 98/206 (47.57%), Query Frame = 0
Query: 4 ESIWNIKDRWLCI-YNNVSSQTPERICMVAWAIWNNRNNIIHQRPVPPVGVFCEWIQDYL 63
ES W +WL + + N S++ + + WA+W N N I H+ +I Y
Sbjct: 52 ESNWK---KWLALEFENYSNEACKIRAISFWALWYNCNRISHEGIRERAHEIVRFINAYY 111
Query: 64 FEYHRLGYKRGRMVQSLENVSNMI---AGEDEMILHVDATFDEESRRCGVRAVIRTREGK 123
E ++ G ++++ + + +D + ++ DA+F++ SRR + R +EG
Sbjct: 112 SEITQM----GEILKNRQETKRFVWEPPVDDAVKINFDASFNQHSRRSCSLVIARNKEGL 171
Query: 124 FMFILHKGFLLFSSPLCAEAVADLEGVKLSAQQNFKKVSVFSDSLSLIPILLHGKQCQAD 183
M + S P+ AEA+A L+ V ++ + F+ + V D+L++I L K+ ++
Sbjct: 172 VMASCTYSWENISDPVIAEAMACLQAVTMAEEIGFQDICVEGDALTVIRKLNSTKEDRSC 231
Query: 184 CLNTVTDIQYLRNTFQKMNFCHVNRE 206
+ + +I F++M F V RE
Sbjct: 232 ISSMIQEINGRTPNFRRMCFRFVPRE 250
BLAST of Lag0034692 vs. ExPASy TrEMBL
Match:
A0A5B6VXJ9 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_024353 PE=4 SV=1)
HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 50/198 (25.25%), Postives = 90/198 (45.45%), Query Frame = 0
Query: 11 DRWLC-IYNNVSSQTPERICMVAWAIWNNRNNIIHQRPVPPVGVFCEWIQDYLFEYHRLG 70
++WL ++ V+ C WAIW +RN+ IH + V +I +YL E L
Sbjct: 185 EQWLIWVFEQVNLHQCRIFCCALWAIWGDRNSRIHNKKVSTEAEIGNFIINYLAEIDGLE 244
Query: 71 YKRGRMVQSLENVSNMIAGEDEMILHVDATFDEESRRCGVRAVIRTREGKFMFI---LHK 130
++ + + + D + ++VD FD + V+R EG + +HK
Sbjct: 245 RRKHGTIDIFQKWT--YPPPDSVKINVDGAFDSHNNISTSGVVVRDNEGSVLLSWSKIHK 304
Query: 131 GFLLFSSPLCAEAVADLEGVKLSAQQNFKKVSVFSDSLSLIPILLHGKQCQADCLNTVTD 190
G S AEA+A E V++ + + K+ + DSL++I + + ++ + D
Sbjct: 305 G---VHSAFEAEAMACREAVQIGVEHGWPKIIIEGDSLTVIKKCQNQDRDRSMLGAFIQD 364
Query: 191 IQYLRNTFQKMNFCHVNR 205
IQ + ++ +K F HV R
Sbjct: 365 IQMMVSSSRKFVFKHVPR 377
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DX30 | 1.7e-10 | 26.19 | uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... | [more] |
A0A5B6VK73 | 2.2e-10 | 25.26 | Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_015215 PE=4 SV=1 | [more] |
A0A2P5EP22 | 5.5e-09 | 28.57 | Ribonuclease H-like domain containing protein OS=Trema orientale OX=63057 GN=Tor... | [more] |
A0A1U8JJX9 | 9.4e-09 | 24.76 | uncharacterized protein LOC107907782 OS=Gossypium hirsutum OX=3635 GN=LOC1079077... | [more] |
A0A5B6VXJ9 | 1.2e-08 | 25.25 | Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_024353 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |