Lag0034542 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0034542
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Prenylated rab acceptor PRA1
Location	chr3: 8259154 .. 8260303 (-)
RNA-Seq Expression	Lag0034542
Synteny	Lag0034542

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGCTATCTATGGAGGAAGTATGCCGATTACGTCTACACCAAGTGGGAAAGAACGATCCTCTGGGATATGATCGATCCGTATCGGCGCCCGAAATCCTTCACTCCTTTGGTTACCATCTATATTGTTGCTTTTTACTCTGGGGTCGTCGGCGCTGCCATCACCGAGCAACTCTACAAGGTAATTTTGGCACTGTTGCGTTGATTTTTTTTTTCTTCTGCTCCTGCAATTGATCGTTTAACTAGAGCGCATGTTTATAATATTGCTGTGCTTTCGATTCTATTCAATTGACGATGAAACTGTGAATTAAGCCGATTGAAATAGGAGGAAGAGGAGGAGAAGTGGTTTTTCACTTTGTTCCTCCATGGCCAAGTAGATAATTCACTTTGTCGCTCACCTTTCCCACACCGCCCTCAAATCTTTGAATATATGGATGAATTGGCCATTTTCGCCATTTTATTAACTCCTTAGTTTGTGAAAGAGTGGTGCCCCTTTCTTTTTTGTGATATAGGGAATGTTCGCCCAGGTGAATTCTATTGTTTATTTAGGAAGGAATTTGTTGATGGTCAAATTTTGCTTAGGAATCTGTCATTCGCTCCACGATCAATAGTGAATTTGTAGGATAGCGGGAAAGACGTGACCTGTTTTGATTTTTCAAAATTCCTGTTTTAAACATTGAACTTATGCACATGTTCTTCAATTTTTCAAAATTTTTGTTTTAGTTTCTAAATTTTGTATTGAAAATCTGTTTTGATTGAAATCTCCTGTGGCGCTTAGTAGATTTGTGTTGTAGGCTACATATTATTGGGTCAGGTATGTATGGAGTCTGGAAAAAGGTAGCCAAAATGGATTATTATGGAAGTTCAAGACTCAAGTAAAGCATTCCAAAATACGAGACTAAAATAAAAATTTATGGAAGTTTAGAGAATGAAAACTGGTTTGAACCATTGTTTTGTTACCCTTGCCGTAGGATCTAGGATGCTAAAAGCATCATTTGTGCTTTATCAACCTCTTCAATCCTTATGAAAATGTGCAGGAGAAGTATTGGGAAGATCACCCTGGGGAAGCTGTACCTTTAATGAAACCAAAGTTTTATTATGGACCTTGGAGGGTAATGAGAGGAGAAGTCCCTGCACATACGAAGTGA

mRNA sequence

ATGGCGAGCTATCTATGGAGGAAGTATGCCGATTACGTCTACACCAAGTGGGAAAGAACGATCCTCTGGGATATGATCGATCCGTATCGGCGCCCGAAATCCTTCACTCCTTTGGTTACCATCTATATTGTTGCTTTTTACTCTGGGGTCGTCGGCGCTGCCATCACCGAGCAACTCTACAAGGAGAAGTATTGGGAAGATCACCCTGGGGAAGCTGTACCTTTAATGAAACCAAAGTTTTATTATGGACCTTGGAGGGTAATGAGAGGAGAAGTCCCTGCACATACGAAGTGA

Coding sequence (CDS)

ATGGCGAGCTATCTATGGAGGAAGTATGCCGATTACGTCTACACCAAGTGGGAAAGAACGATCCTCTGGGATATGATCGATCCGTATCGGCGCCCGAAATCCTTCACTCCTTTGGTTACCATCTATATTGTTGCTTTTTACTCTGGGGTCGTCGGCGCTGCCATCACCGAGCAACTCTACAAGGAGAAGTATTGGGAAGATCACCCTGGGGAAGCTGTACCTTTAATGAAACCAAAGTTTTATTATGGACCTTGGAGGGTAATGAGAGGAGAAGTCCCTGCACATACGAAGTGA

Protein sequence

MASYLWRKYADYVYTKWERTILWDMIDPYRRPKSFTPLVTIYIVAFYSGVVGAAITEQLYKEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK

Homology

[Close]

BLAST of Lag0034542 vs. NCBI nr
Match: XP_022147559.1 (uncharacterized protein At4g29660 [Momordica charantia])

HSP 1 Score: 210.3 bits (534), Expect = 7.4e-51
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MASYLWRKYADYVYTKWERTILWDMIDPYRRPKSFTPLVTIYIVAFYSGVVGAAITEQLY 60
          MASYLWRKYADYVYTKWERTILWDM+DPYRRPKSFTPLV+IYI AFYSGVVGAAITEQLY
Sbjct: 1  MASYLWRKYADYVYTKWERTILWDMVDPYRRPKSFTPLVSIYIAAFYSGVVGAAITEQLY 60

Query: 61 KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK 98
          KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK
Sbjct: 61 KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK 97

[Close]

BLAST of Lag0034542 vs. NCBI nr
Match: XP_038878275.1 (uncharacterized protein At4g29660 [Benincasa hispida])

HSP 1 Score: 209.1 bits (531), Expect = 1.7e-50
Identity = 93/97 (95.88%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MASYLWRKYADYVYTKWERTILWDMIDPYRRPKSFTPLVTIYIVAFYSGVVGAAITEQLY 60
          MASYLWRKYADYVYTKWERTILWDM+DPYRRPKSFTPLV+IYI AFY+GVVGAAITEQLY
Sbjct: 1  MASYLWRKYADYVYTKWERTILWDMVDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60

Query: 61 KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK 98
          KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK
Sbjct: 61 KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK 97

[Close]

BLAST of Lag0034542 vs. NCBI nr
Match: KAG6589991.1 (hypothetical protein SDJN03_15414, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 207.2 bits (526), Expect = 6.3e-50
Identity = 92/97 (94.85%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1   MASYLWRKYADYVYTKWERTILWDMIDPYRRPKSFTPLVTIYIVAFYSGVVGAAITEQLY 60
           MASYLWRKYADY+YTKWERTILWDM+DPYRRPKSFTPLVTIYI AFY+GVVGAAITEQLY
Sbjct: 265 MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY 324

Query: 61  KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK 98
           KEKYWEDHPGE VPLMKPKFYYGPWRVMRGEVPAHTK
Sbjct: 325 KEKYWEDHPGEDVPLMKPKFYYGPWRVMRGEVPAHTK 361

[Close]

BLAST of Lag0034542 vs. NCBI nr
Match: XP_022961093.1 (uncharacterized protein At4g29660 [Cucurbita moschata] >XP_022987918.1 uncharacterized protein At4g29660 [Cucurbita maxima] >XP_023516486.1 uncharacterized protein At4g29660 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207.2 bits (526), Expect = 6.3e-50
Identity = 92/97 (94.85%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1  MASYLWRKYADYVYTKWERTILWDMIDPYRRPKSFTPLVTIYIVAFYSGVVGAAITEQLY 60
          MASYLWRKYADY+YTKWERTILWDM+DPYRRPKSFTPLVTIYI AFY+GVVGAAITEQLY
Sbjct: 1  MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY 60

Query: 61 KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK 98
          KEKYWEDHPGE VPLMKPKFYYGPWRVMRGEVPAHTK
Sbjct: 61 KEKYWEDHPGEDVPLMKPKFYYGPWRVMRGEVPAHTK 97

[Close]

BLAST of Lag0034542 vs. NCBI nr
Match: XP_008450847.1 (PREDICTED: uncharacterized protein At4g29660 [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 1.2e-48
Identity = 90/97 (92.78%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1  MASYLWRKYADYVYTKWERTILWDMIDPYRRPKSFTPLVTIYIVAFYSGVVGAAITEQLY 60
          MASYLWRKYADY+YTKWE+T+LWDMIDPYRRPKSFTPLV+IYI AFY+GVVGAAITEQLY
Sbjct: 1  MASYLWRKYADYLYTKWEKTLLWDMIDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60

Query: 61 KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK 98
          KEKYWEDHPGEAVPLMKPKFY GPWRVMRGEVPAHTK
Sbjct: 61 KEKYWEDHPGEAVPLMKPKFYTGPWRVMRGEVPAHTK 97

[Close]

BLAST of Lag0034542 vs. ExPASy Swiss-Prot
Match: Q94K18 (Uncharacterized protein At4g29660 OS=Arabidopsis thaliana OX=3702 GN=EMB2752 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 6.3e-37
Identity = 66/92 (71.74%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 3  SYLWRKYADYVYTKWERTILWDMIDPYRRPKSFTPLVTIYIVAFYSGVVGAAITEQLYKE 62
          S LWRKYADY Y K+ER  +W+MI+PYRRPK+FT L+TIY+ AFY+GV+GAA+TEQLYKE
Sbjct: 6  SQLWRKYADYKYNKFERFAVWEMIEPYRRPKTFTTLITIYVAAFYTGVIGAAVTEQLYKE 65

Query: 63 KYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPA 95
          K+WE+HPG+ VPLMKP FY GPWRV RGE  A
Sbjct: 66 KFWEEHPGKTVPLMKPVFYRGPWRVYRGEAIA 97

The following BLAST results are available for this feature:

BLAST of Lag0034542 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147559.1	7.4e-51	96.91	uncharacterized protein At4g29660 [Momordica charantia]	[more]
XP_038878275.1	1.7e-50	95.88	uncharacterized protein At4g29660 [Benincasa hispida]	[more]
KAG6589991.1	6.3e-50	94.85	hypothetical protein SDJN03_15414, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022961093.1	6.3e-50	94.85	uncharacterized protein At4g29660 [Cucurbita moschata] >XP_022987918.1 uncharact...	[more]
XP_008450847.1	1.2e-48	92.78	PREDICTED: uncharacterized protein At4g29660 [Cucumis melo]	[more]

BLAST of Lag0034542 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94K18	6.3e-37	71.74	Uncharacterized protein At4g29660 OS=Arabidopsis thaliana OX=3702 GN=EMB2752 PE=...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037759	Uncharacterized protein At4g29660-like	PANTHER	PTHR37898	OS05G0540200 PROTEIN	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0034542.1	Lag0034542.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane