Lag0034458 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0034458
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptiontransmembrane protein 234 homolog
Locationchr3: 7533110 .. 7533508 (-)
RNA-Seq ExpressionLag0034458
SyntenyLag0034458
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGGAGATGTAGAAAAAATGGTTGCGATCGGTCTAGTCTGGGGCAGCACTAACGCTCTGATGCGCCGTGGCGCTCTTCTGTGGGACCAAGCTCTCAAATCTTCTTCCAATTCAACCCACACTTCCACCAAACTCCTCTCCTCCCTCCGTCGATGGCTCAAGCTCCTCTCAATTTGGCAGTACACAGTCCCCTTTTTGCTTAATCTCACTGCCTCAGCTACCTTCTTCGCCATTCTAAGTGACGCCCCAATATCACTCGCCGTTCCGGTCACCAACGCCACGACTTTTGCTGCCACCGCCGTGTTCGGAATGCTCCTTGGCGAAGATACTCGTGTCGGGTACGCTCTGTTTGGTACCGCTCTGATTGGTTTGGGCGTATGGCTCTGCATTAACTAA

mRNA sequence

ATGATCGGAGATGTAGAAAAAATGGTTGCGATCGGTCTAGTCTGGGGCAGCACTAACGCTCTGATGCGCCGTGGCGCTCTTCTGTGGGACCAAGCTCTCAAATCTTCTTCCAATTCAACCCACACTTCCACCAAACTCCTCTCCTCCCTCCGTCGATGGCTCAAGCTCCTCTCAATTTGGCAGTACACAGTCCCCTTTTTGCTTAATCTCACTGCCTCAGCTACCTTCTTCGCCATTCTAAGTGACGCCCCAATATCACTCGCCGTTCCGGTCACCAACGCCACGACTTTTGCTGCCACCGCCGTGTTCGGAATGCTCCTTGGCGAAGATACTCGTGTCGGGTACGCTCTGTTTGGTACCGCTCTGATTGGTTTGGGCGTATGGCTCTGCATTAACTAA

Coding sequence (CDS)

ATGATCGGAGATGTAGAAAAAATGGTTGCGATCGGTCTAGTCTGGGGCAGCACTAACGCTCTGATGCGCCGTGGCGCTCTTCTGTGGGACCAAGCTCTCAAATCTTCTTCCAATTCAACCCACACTTCCACCAAACTCCTCTCCTCCCTCCGTCGATGGCTCAAGCTCCTCTCAATTTGGCAGTACACAGTCCCCTTTTTGCTTAATCTCACTGCCTCAGCTACCTTCTTCGCCATTCTAAGTGACGCCCCAATATCACTCGCCGTTCCGGTCACCAACGCCACGACTTTTGCTGCCACCGCCGTGTTCGGAATGCTCCTTGGCGAAGATACTCGTGTCGGGTACGCTCTGTTTGGTACCGCTCTGATTGGTTTGGGCGTATGGCTCTGCATTAACTAA

Protein sequence

MIGDVEKMVAIGLVWGSTNALMRRGALLWDQALKSSSNSTHTSTKLLSSLRRWLKLLSIWQYTVPFLLNLTASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEDTRVGYALFGTALIGLGVWLCIN
Homology
BLAST of Lag0034458 vs. NCBI nr
Match: XP_022961299.1 (transmembrane protein 234 homolog [Cucurbita moschata] >XP_022961300.1 transmembrane protein 234 homolog [Cucurbita moschata] >XP_022961301.1 transmembrane protein 234 homolog [Cucurbita moschata] >XP_022961303.1 transmembrane protein 234 homolog [Cucurbita moschata])

HSP 1 Score: 240.4 bits (612), Expect = 9.1e-60
Identity = 124/132 (93.94%), Postives = 130/132 (98.48%), Query Frame = 0

Query: 1   MIGDVEKMVAIGLVWGSTNALMRRGALLWDQALKSSSNSTHTSTKLLSSLRRWLKLLSIW 60
           MIGDVEKMVAIG+VWG+TNALMRRGALLWDQALKSSSN+T +S KLLSSLRRWLKLLSIW
Sbjct: 1   MIGDVEKMVAIGIVWGATNALMRRGALLWDQALKSSSNATRSSNKLLSSLRRWLKLLSIW 60

Query: 61  QYTVPFLLNLTASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEDTRVGYALFGT 120
           QYTVPFL+NLTASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGE+TRVGYALFGT
Sbjct: 61  QYTVPFLVNLTASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEETRVGYALFGT 120

Query: 121 ALIGLGVWLCIN 133
           ALIGLGVWLCIN
Sbjct: 121 ALIGLGVWLCIN 132

BLAST of Lag0034458 vs. NCBI nr
Match: XP_023516356.1 (transmembrane protein 234 homolog isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.2 bits (609), Expect = 2.0e-59
Identity = 123/132 (93.18%), Postives = 130/132 (98.48%), Query Frame = 0

Query: 1   MIGDVEKMVAIGLVWGSTNALMRRGALLWDQALKSSSNSTHTSTKLLSSLRRWLKLLSIW 60
           MIGDVEKMVAIG+VWG+TNALMRRGALLWDQALKSSSN+T +S KLLSSLRRWLKLLSIW
Sbjct: 1   MIGDVEKMVAIGMVWGATNALMRRGALLWDQALKSSSNATRSSNKLLSSLRRWLKLLSIW 60

Query: 61  QYTVPFLLNLTASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEDTRVGYALFGT 120
           QYT+PFL+NLTASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGE+TRVGYALFGT
Sbjct: 61  QYTLPFLVNLTASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEETRVGYALFGT 120

Query: 121 ALIGLGVWLCIN 133
           ALIGLGVWLCIN
Sbjct: 121 ALIGLGVWLCIN 132

BLAST of Lag0034458 vs. NCBI nr
Match: KAG7023602.1 (Transmembrane protein-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 237.7 bits (605), Expect = 5.9e-59
Identity = 123/132 (93.18%), Postives = 129/132 (97.73%), Query Frame = 0

Query: 1   MIGDVEKMVAIGLVWGSTNALMRRGALLWDQALKSSSNSTHTSTKLLSSLRRWLKLLSIW 60
           MIG VEKMVAIG+VWG+TNALMRRGALLWDQALKSSSN+T +S KLLSSLRRWLKLLSIW
Sbjct: 1   MIGGVEKMVAIGIVWGATNALMRRGALLWDQALKSSSNATRSSNKLLSSLRRWLKLLSIW 60

Query: 61  QYTVPFLLNLTASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEDTRVGYALFGT 120
           QYTVPFL+NLTASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGE+TRVGYALFGT
Sbjct: 61  QYTVPFLVNLTASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEETRVGYALFGT 120

Query: 121 ALIGLGVWLCIN 133
           ALIGLGVWLCIN
Sbjct: 121 ALIGLGVWLCIN 132

BLAST of Lag0034458 vs. NCBI nr
Match: XP_022987899.1 (transmembrane protein 234 homolog [Cucurbita maxima] >XP_022987900.1 transmembrane protein 234 homolog [Cucurbita maxima])

HSP 1 Score: 237.3 bits (604), Expect = 7.7e-59
Identity = 122/132 (92.42%), Postives = 128/132 (96.97%), Query Frame = 0

Query: 1   MIGDVEKMVAIGLVWGSTNALMRRGALLWDQALKSSSNSTHTSTKLLSSLRRWLKLLSIW 60
           MIGDVEKMVAIG+ WG+TNALMRRGALLWDQALKSSSN+T +S KLLSS RRWLKLLSIW
Sbjct: 1   MIGDVEKMVAIGIAWGATNALMRRGALLWDQALKSSSNATRSSNKLLSSFRRWLKLLSIW 60

Query: 61  QYTVPFLLNLTASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEDTRVGYALFGT 120
           QYTVPFL+NLTASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGE+TRVGYALFGT
Sbjct: 61  QYTVPFLVNLTASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEETRVGYALFGT 120

Query: 121 ALIGLGVWLCIN 133
           ALIGLGVWLCIN
Sbjct: 121 ALIGLGVWLCIN 132

BLAST of Lag0034458 vs. NCBI nr
Match: XP_038879672.1 (transmembrane protein 234 homolog [Benincasa hispida])

HSP 1 Score: 235.7 bits (600), Expect = 2.2e-58
Identity = 125/132 (94.70%), Postives = 128/132 (96.97%), Query Frame = 0

Query: 1   MIGDVEKMVAIGLVWGSTNALMRRGALLWDQALKSSSNSTHTSTKLLSSLRRWLKLLSIW 60
           MIGDVEKMVAIGLVWG+TNALMRRGALLWDQALKSSSN    STKLLSSLRRWLKLLSIW
Sbjct: 1   MIGDVEKMVAIGLVWGATNALMRRGALLWDQALKSSSN----STKLLSSLRRWLKLLSIW 60

Query: 61  QYTVPFLLNLTASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEDTRVGYALFGT 120
           QYT+PFLLNLTASATFFAILSDAPISLAVP+TNATTFAATAVFGMLLGEDTRVGYALFGT
Sbjct: 61  QYTLPFLLNLTASATFFAILSDAPISLAVPITNATTFAATAVFGMLLGEDTRVGYALFGT 120

Query: 121 ALIGLGVWLCIN 133
           ALIGLGVWLCIN
Sbjct: 121 ALIGLGVWLCIN 128

BLAST of Lag0034458 vs. ExPASy Swiss-Prot
Match: Q54ZG7 (Transmembrane protein 234 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0277575 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10
Identity = 40/129 (31.01%), Postives = 67/129 (51.94%), Query Frame = 0

Query: 4   DVEKMVAIGLVWGSTNALMRRGALLWDQALKSSSNSTHTSTKLLSSLRRWLKLLSIWQYT 63
           ++  ++ +G +WG TN L++RG+    + +         S  +   +  W +      YT
Sbjct: 5   NIISLLLVGFIWGGTNPLIKRGS----EGVSKVKKDNFLSQIIYEFVYLWTRP----SYT 64

Query: 64  VPFLLNLTASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEDTRVGYALFGTALI 123
           +P L+NL+ S  FF  LS   ISL VP++N+ TF  T++ GMLLGE      +  G   +
Sbjct: 65  IPMLINLSGSVVFFYTLSKVDISLVVPISNSLTFLFTSLMGMLLGEKVLHFKSYLGMIFV 124

Query: 124 GLGVWLCIN 133
             GV +C++
Sbjct: 125 LAGVTICVS 125

BLAST of Lag0034458 vs. ExPASy Swiss-Prot
Match: A0NGI1 (Transmembrane protein 234 homolog OS=Anopheles gambiae OX=7165 GN=AGAP012180 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.1e-07
Identity = 41/130 (31.54%), Postives = 72/130 (55.38%), Query Frame = 0

Query: 5   VEKMVAIGLVWGSTNALMRRGALLWDQALKSSSNSTHTSTKLLSSLRRWLK---LLSIWQ 64
           V  ++ + ++WG+TN  ++RG++ +++ LK+ S         L  L  WL+   L++ WQ
Sbjct: 17  VLSILLVAIMWGATNPFIKRGSIGYNE-LKADSK--------LGQL--WLEVRFLITRWQ 76

Query: 65  YTVPFLLNLTASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEDTRVGYALF-GT 124
           Y +P ++N   S  +   L    +SL VP+ N+ TF  TA+   LLGE  + G+ ++ G 
Sbjct: 77  YLLPLVINQLGSIVYVLTLQRTELSLTVPMANSLTFVFTAITARLLGE-RQSGWKIYCGM 134

Query: 125 ALIGLGVWLC 131
            L+ LG  +C
Sbjct: 137 TLVILGTVIC 134

BLAST of Lag0034458 vs. ExPASy Swiss-Prot
Match: Q8R1E7 (Transmembrane protein 234 OS=Mus musculus OX=10090 GN=Tmem234 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.5e-06
Identity = 37/129 (28.68%), Postives = 59/129 (45.74%), Query Frame = 0

Query: 3   GDVEKMVAIGLVWGSTNALMRRGALLWDQALKSSSNSTHTSTKLLSSLRRWLKLLSIWQY 62
           G V  +V +  +WG T  L++R +        S        T     L+    L    +Y
Sbjct: 6   GQVLALVLVAALWGGTQPLLKRAS--------SGLEQVRERTWAWQLLQEIKALFGNTEY 65

Query: 63  TVPFLLNLTASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEDTRVGYALFGTAL 122
            +PFLLN + S  ++  L+   ++LAVP+ N+     T + G +LGED     A+ G  L
Sbjct: 66  LMPFLLNQSGSLLYYLTLASTDLTLAVPICNSLAIVFTLIVGKVLGEDIGGKEAVAGMVL 125

Query: 123 IGLGVWLCI 132
              G+ +CI
Sbjct: 126 TITGITVCI 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022961299.19.1e-6093.94transmembrane protein 234 homolog [Cucurbita moschata] >XP_022961300.1 transmemb... [more]
XP_023516356.12.0e-5993.18transmembrane protein 234 homolog isoform X1 [Cucurbita pepo subsp. pepo][more]
KAG7023602.15.9e-5993.18Transmembrane protein-like protein, partial [Cucurbita argyrosperma subsp. argyr... [more]
XP_022987899.17.7e-5992.42transmembrane protein 234 homolog [Cucurbita maxima] >XP_022987900.1 transmembra... [more]
XP_038879672.12.2e-5894.70transmembrane protein 234 homolog [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Q54ZG71.1e-1031.01Transmembrane protein 234 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0... [more]
A0NGI17.1e-0731.54Transmembrane protein 234 homolog OS=Anopheles gambiae OX=7165 GN=AGAP012180 PE=... [more]
Q8R1E73.5e-0628.68Transmembrane protein 234 OS=Mus musculus OX=10090 GN=Tmem234 PE=1 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.3730.20coord: 25..132
e-value: 1.4E-6
score: 30.4
IPR018908Putative transmembrane family 234PFAMPF10639TMEM234coord: 8..131
e-value: 1.8E-25
score: 89.3
IPR018908Putative transmembrane family 234PANTHERPTHR28668TRANSMEMBRANE PROTEIN 234coord: 1..132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0034458.1Lag0034458.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane